AT3G09250

SnoaL-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0009353
Physical Location & Seq
Forward (+)
2838943 .. 2840614
1672 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G09250.1

Sequence Viewer

Length: 735 bp
ATGGCGCTTCATGGGTCTGGAGTTTTTTGTAAAGTTTCAAACATGGTAGAGATCACTTCTCCGTTTGGTGGTTCCATGAGGCTGCTTCACTTGCCTAAATCTTATCCGATTCACTGCAACATGGTTTCAGCTAGCAATACATTTGGGTCAGCTCATCTCAAGCTGCAAAACAAAGAACCGTGCTCCCGTTTAAGGCCTTGTCGAGTCAAACGCGAAGAAAATAACCAAACTGCGGATGTTGAAAGCATTTCAATGGATGAGAACACGTTGAAGCAAGATCTCGAGACTGCGGTCCAGGAAGAGAATTATGTGGAGGCAGCTAAAATCCGTGATAAACTAAAAGAGCTTCAAGAAGACAACAAAGCCTCTGTTTTATCAGCCAATTCTCGGTTCTACCAATCTTTCAGAAACGGGGATTTAGCTGCGATGCAATCACTATGGTCAAAATCAGGAAACCCGTGCTGTGTACATCCAGGGGCCAAAGGCATAACTGGTTATGATTACGTGATGGAAAGCTGGGAGCTTGTGTGGATGAACTATGAGTTTCCGTTACTGATTGAGCTGAAAGATGTCGAGGTTCATGTCCGAGGAGAAGTAGGTTATGTAACGTGTATGGAGTTTGTGAAGACGAAAGGGAGTAGTAGTTGGGGAGCTCAGTTTGTGTCGAATGTGTTTGAACGGATCGATGGACAATGGTTTATATGCATTCACCATGCTTCTCCTGTTGATATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SnoaL_3 UVR

Protein Analysis

244

Amino Acids

27.51

Weight (kDa)

5.92

Isoelectric Point (pI)

37.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UVR PF02151 89 - 118 3.4e-07 UvrB/uvrC motif
SnoaL_3 PF13474 124 - 242 2.9e-21 SnoaL-like domain
DUF4440 PF14534 126 - 232 8.9e-07 Domain of unknown function (DUF4440)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 213
AciI CCGC 2 cut(s) 233, 290
AclWI GGATC 1 cut(s) 689
AfaI GTAC 1 cut(s) 468
AfiI CCNNNNNNNGG 4 cut(s) 68, 192, 232, 387
AflIII ACRYGT 2 cut(s) 264, 608
AgsI TTSAA 6 cut(s) 39, 242, 252, 271, 350, 677
AjnI CCWGG 2 cut(s) 294, 472
AjuI GAANNNNNNNTTGG 2 cut(s) 374, 406
Alw21I GWGCWC 2 cut(s) 185, 655
Alw26I GTCTC 1 cut(s) 278
AlwI GGATC 1 cut(s) 689
Ama87I CYCGRG 1 cut(s) 281
AoxI GGCC 2 cut(s) 194, 477
ApeKI GCWGC 4 cut(s) 82, 163, 317, 422
AspLEI GCGC 1 cut(s) 7
AspS9I GGNCC 2 cut(s) 292, 477
AsuHPI GGTGA 1 cut(s) 701
AsuNHI GCTAGC 1 cut(s) 131
AvaI CYCGRG 1 cut(s) 281
AvaII GGWCC 1 cut(s) 292
BanII GRGCYC 1 cut(s) 655
BbsI GAAGAC 2 cut(s) 360, 632
Bbv12I GWGCWC 2 cut(s) 185, 655
BbvI GCAGC 4 cut(s) 69, 150, 329, 409
BccI CCATC 2 cut(s) 502, 680
BciT130I CCWGG 2 cut(s) 296, 474
BcoDI GTCTC 1 cut(s) 278
BfaI CTAG 1 cut(s) 132
BfoI RGCGCY 1 cut(s) 8
BglII AGATCT 1 cut(s) 277
BisI GCNGC 4 cut(s) 83, 164, 318, 423
BlsI GCNGC 4 cut(s) 84, 165, 319, 424
Bme1390I CCNGG 2 cut(s) 296, 474
Bme18I GGWCC 1 cut(s) 292
BmeT110I CYCGRG 1 cut(s) 281
BmgT120I GGNCC 2 cut(s) 292, 477
BmiI GGNNCC 2 cut(s) 73, 478
BmrFI CCNGG 2 cut(s) 296, 474
BmsI GCATC 1 cut(s) 417
BmtI GCTAGC 1 cut(s) 135
BoxI GACNNNNGTC 1 cut(s) 290
BpiI GAAGAC 2 cut(s) 360, 632
BpmI CTGGAG 1 cut(s) 39
BpuEI CTTGAG 1 cut(s) 143
Bsa29I ATCGAT 1 cut(s) 684
BsaAI YACGTR 1 cut(s) 505
BsaJI CCNNGG 2 cut(s) 473, 586
BsaXI ACNNNNNCTCC 4 cut(s) 512, 542, 628, 658
Bsc4I CCNNNNNNNGG 4 cut(s) 68, 192, 232, 387
Bse1I ACTGG 1 cut(s) 496
BseBI CCWGG 2 cut(s) 296, 474
BseCI ATCGAT 1 cut(s) 684
BseDI CCNNGG 2 cut(s) 473, 586
BseGI GGATG 4 cut(s) 241, 262, 469, 537
BseLI CCNNNNNNNGG 4 cut(s) 68, 192, 232, 387
BseMII CTCAG 1 cut(s) 668
BseNI ACTGG 1 cut(s) 496
BseRI GAGGAG 1 cut(s) 603
BseXI GCAGC 4 cut(s) 69, 150, 329, 409
BseYI CCCAGC 1 cut(s) 516
Bsh1236I CGCG 1 cut(s) 213
BshFI GGCC 2 cut(s) 196, 479
BshVI ATCGAT 1 cut(s) 684
BsiHKAI GWGCWC 2 cut(s) 185, 655
BsiHKCI CYCGRG 1 cut(s) 281
BslI CCNNNNNNNGG 4 cut(s) 68, 192, 232, 387
BsmAI GTCTC 1 cut(s) 278
BsmI GAATGC 1 cut(s) 705
BsnI GGCC 2 cut(s) 196, 479
BsoBI CYCGRG 1 cut(s) 281
Bsp1286I GDGCHC 2 cut(s) 185, 655
Bsp1407I TGTACA 1 cut(s) 466
Bsp143I GATC 3 cut(s) 51, 277, 681
BspACI CCGC 2 cut(s) 233, 290
BspANI GGCC 2 cut(s) 196, 479
BspCNI CTCAG 1 cut(s) 667
BspDI ATCGAT 1 cut(s) 684
BspFNI CGCG 1 cut(s) 213
BspLI GGNNCC 2 cut(s) 73, 478
BspOI GCTAGC 1 cut(s) 135
BspPI GGATC 1 cut(s) 689
BsrGI TGTACA 1 cut(s) 466
BsrI ACTGG 1 cut(s) 496
BssECI CCNNGG 2 cut(s) 473, 586
BssMI GATC 3 cut(s) 51, 277, 681
Bst2UI CCWGG 2 cut(s) 296, 474
Bst4CI ACNGT 1 cut(s) 180
Bst6I CTCTTC 1 cut(s) 294
BstAUI TGTACA 1 cut(s) 466
BstBAI YACGTR 1 cut(s) 505
BstC8I GCNNGC 1 cut(s) 133
BstDEI CTNAG 1 cut(s) 654
BstF5I GGATG 4 cut(s) 241, 262, 469, 537
BstFNI CGCG 1 cut(s) 213
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 3 cut(s) 54, 280, 684
BstMAI GTCTC 1 cut(s) 278
BstMBI GATC 3 cut(s) 51, 277, 681
BstMWI GCNNNNNNNGC 1 cut(s) 91
BstNI CCWGG 2 cut(s) 296, 474
BstPAI GACNNNNGTC 1 cut(s) 290
BstSCI CCNGG 2 cut(s) 294, 472
BstUI CGCG 1 cut(s) 213
BstV1I GCAGC 4 cut(s) 69, 150, 329, 409
BstV2I GAAGAC 2 cut(s) 360, 632
BstX2I RGATCY 1 cut(s) 277
BstYI RGATCY 1 cut(s) 277
Bsu15I ATCGAT 1 cut(s) 684
BsuRI GGCC 2 cut(s) 196, 479
BsuTUI ATCGAT 1 cut(s) 684
BtgZI GCGATG 1 cut(s) 440
BtsCI GGATG 4 cut(s) 241, 262, 469, 537
BtsI GCAGTG 1 cut(s) 112
BtsIMutI CAGTG 1 cut(s) 112
Cac8I GCNNGC 1 cut(s) 133
CfoI GCGC 1 cut(s) 7
Cfr13I GGNCC 2 cut(s) 292, 477
ClaI ATCGAT 1 cut(s) 684
Csp6I GTAC 1 cut(s) 467
CviAII CATG 6 cut(s) 11, 43, 76, 121, 581, 713
CviQI GTAC 1 cut(s) 467
DdeI CTNAG 1 cut(s) 654
DpnI GATC 3 cut(s) 53, 279, 683
DpnII GATC 3 cut(s) 51, 277, 681
Eam1104I CTCTTC 1 cut(s) 294
EarI CTCTTC 1 cut(s) 294
Ecl136II GAGCTC 1 cut(s) 653
Eco147I AGGCCT 1 cut(s) 196
Eco24I GRGCYC 1 cut(s) 655
Eco47I GGWCC 1 cut(s) 292
Eco53kI GAGCTC 1 cut(s) 653
Eco88I CYCGRG 1 cut(s) 281
EcoICRI GAGCTC 1 cut(s) 653
EcoRII CCWGG 2 cut(s) 294, 472
EcoT22I ATGCAT 1 cut(s) 707
EcoT38I GRGCYC 1 cut(s) 655
FaeI CATG 6 cut(s) 14, 46, 79, 124, 584, 716
FatI CATG 6 cut(s) 10, 42, 75, 120, 580, 712
Fnu4HI GCNGC 4 cut(s) 83, 164, 318, 423
FokI GGATG 4 cut(s) 248, 269, 456, 544
FriOI GRGCYC 1 cut(s) 655
Fsp4HI GCNGC 4 cut(s) 83, 164, 318, 423
FspBI CTAG 1 cut(s) 132
GlaI GCGC 1 cut(s) 6
GluI GCNGC 4 cut(s) 83, 164, 318, 423
GsaI CCCAGC 1 cut(s) 520
GsuI CTGGAG 1 cut(s) 39
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 2 cut(s) 196, 479
HhaI GCGC 1 cut(s) 7
Hin1II CATG 6 cut(s) 14, 46, 79, 124, 584, 716
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HinfI GANTC 2 cut(s) 109, 204
HphI GGTGA 1 cut(s) 701
Hpy166II GTNNAC 1 cut(s) 467
Hpy188I TCNGA 3 cut(s) 108, 407, 587
Hpy188III TCNNGA 5 cut(s) 18, 281, 283, 350, 450
Hpy8I GTNNAC 1 cut(s) 467
HpyCH4III ACNGT 1 cut(s) 180
HpyCH4IV ACGT 3 cut(s) 266, 504, 608
HpyCH4V TGCA 4 cut(s) 117, 166, 430, 705
HpyF10VI GCNNNNNNNGC 1 cut(s) 91
HpyF3I CTNAG 1 cut(s) 654
HpySE526I ACGT 3 cut(s) 266, 504, 608
Hsp92II CATG 6 cut(s) 14, 46, 79, 124, 584, 716
HspAI GCGC 1 cut(s) 5
Kzo9I GATC 3 cut(s) 51, 277, 681
LmnI GCTCC 3 cut(s) 188, 520, 650
LpnPI CCDG 8 cut(s) 3, 281, 308, 435, 459, 477, 486, 502
Lsp1109I GCAGC 4 cut(s) 69, 150, 329, 409
LweI GCATC 1 cut(s) 417
MaeI CTAG 1 cut(s) 132
MaeII ACGT 3 cut(s) 266, 504, 608
MaeIII GTNAC 2 cut(s) 549, 604
MalI GATC 3 cut(s) 53, 279, 683
MboI GATC 3 cut(s) 51, 277, 681
MboII GAAGA 4 cut(s) 227, 311, 365, 637
MflI RGATCY 1 cut(s) 277
MhlI GDGCHC 2 cut(s) 185, 655
MluCI AATT 2 cut(s) 304, 382
MlyI GAGTC 1 cut(s) 213
MnlI CCTC 5 cut(s) 72, 307, 376, 568, 581
Mph1103I ATGCAT 1 cut(s) 707
MseI TTAA 1 cut(s) 191
MslI CAYNNNNRTG 1 cut(s) 251
MspR9I CCNGG 2 cut(s) 296, 474
Mva1269I GAATGC 1 cut(s) 705
MvaI CCWGG 2 cut(s) 296, 474
MvnI CGCG 1 cut(s) 213
MwoI GCNNNNNNNGC 1 cut(s) 91
NdeII GATC 3 cut(s) 51, 277, 681
NheI GCTAGC 1 cut(s) 131
NlaIII CATG 6 cut(s) 14, 46, 79, 124, 584, 716
NlaIV GGNNCC 2 cut(s) 73, 478
NsiI ATGCAT 1 cut(s) 707
PaeR7I CTCGAG 1 cut(s) 281
PceI AGGCCT 1 cut(s) 196
PctI GAATGC 1 cut(s) 705
PfeI GAWTC 1 cut(s) 109
PfoI TCCNGGA 1 cut(s) 294
PkrI GCNGC 4 cut(s) 84, 165, 319, 424
PleI GAGTC 1 cut(s) 212
PpsI GAGTC 1 cut(s) 212
Ppu21I YACGTR 1 cut(s) 505
PshAI GACNNNNGTC 1 cut(s) 290
Psp124BI GAGCTC 1 cut(s) 655
Psp6I CCWGG 2 cut(s) 294, 472
PspFI CCCAGC 1 cut(s) 516
PspGI CCWGG 2 cut(s) 294, 472
PspN4I GGNNCC 2 cut(s) 73, 478
PspPI GGNCC 2 cut(s) 292, 477
PsuI RGATCY 1 cut(s) 277
RsaI GTAC 1 cut(s) 468
RsaNI GTAC 1 cut(s) 467
RseI CAYNNNNRTG 1 cut(s) 251
SacI GAGCTC 1 cut(s) 655
SaqAI TTAA 1 cut(s) 191
SatI GCNGC 4 cut(s) 83, 164, 318, 423
Sau3AI GATC 3 cut(s) 51, 277, 681
Sau96I GGNCC 2 cut(s) 292, 477
SchI GAGTC 1 cut(s) 213
ScrFI CCNGG 2 cut(s) 296, 474
SduI GDGCHC 2 cut(s) 185, 655
SfaNI GCATC 1 cut(s) 417
Sfr274I CTCGAG 1 cut(s) 281
SinI GGWCC 1 cut(s) 292
SlaI CTCGAG 1 cut(s) 281
SmiMI CAYNNNNRTG 1 cut(s) 251
SmlI CTYRAG 2 cut(s) 158, 281
SmoI CTYRAG 2 cut(s) 158, 281
Sse9I AATT 2 cut(s) 304, 382
SseBI AGGCCT 1 cut(s) 196
SsiI CCGC 2 cut(s) 233, 290
SspMI CTAG 1 cut(s) 132
SstI GAGCTC 1 cut(s) 655
StuI AGGCCT 1 cut(s) 196
StyD4I CCNGG 2 cut(s) 294, 472
TaaI ACNGT 1 cut(s) 180
TaiI ACGT 3 cut(s) 269, 507, 611
TaqI TCGA 5 cut(s) 202, 282, 573, 665, 684
TasI AATT 2 cut(s) 304, 382
TatI WGTACW 1 cut(s) 466
TfiI GAWTC 1 cut(s) 109
Tru1I TTAA 1 cut(s) 191
Tru9I TTAA 1 cut(s) 191
TscAI CASTG 1 cut(s) 119
TseI GCWGC 4 cut(s) 82, 163, 317, 422
TspDTI ATGAA 2 cut(s) 548, 569
TspGWI ACGGA 4 cut(s) 51, 317, 537, 694
TspRI CASTG 1 cut(s) 119
VpaK11BI GGWCC 1 cut(s) 292
XhoI CTCGAG 1 cut(s) 281
XspI CTAG 1 cut(s) 132
Zsp2I ATGCAT 1 cut(s) 707
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.