Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0009353

Physical Location & Seq

Genomic Coordinates Reverse (-)

38425566 .. 38427124

Gene Structure 1559 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024709

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGGTGCTTCATGGATCTACTTTCTGCTTAAATGGAAATCTTTCTTTTAAGGAGTTTAACAGCTTGCCGTGTGCATGTTATAGTTTGGGGATGCTTCATCACCTGTCTTTACCATCGCGGAAATACAATTTAGTTGTAGCAAATACTCTTGAAAGAGGGCATAGATTTCAGTTTTTGTCTGGAGATGGTCATCTGAAATTGCGAACTGAACAATCCACATCCTCTCTTCCCACCTCTGGTTTGCGATCGTTAAAACCATGCAGTGCGAAATGTGATGATTCAAAGGATAGCTCAGTTAGCGAAAATATCATATTGGATGCAGAAACCTTAACGCGGGATCTAGATATTGCCATTGCAGAGGAGAACTATGCTAAGGCAGCAGAAATTAGGGATAGACTAAGACTTCTGCGGGAGGATAGTATGACTTCTGTTTTAGCAGCAAATTCTCGATTTTACGAGTCATTCAGAATAGGGGATCTGGCTGCAATGCAATCTCTTTGGGCCAAACGGGATGAAGTCTGTTGTGTACACCCGGGTGCACGTGGGATATATGGTTATGAGGATGTAATGACTAGCTGGGACTACGTATGGGCGAACTATGAATTTCCACTACAGATTGAGCTGAAGGATGTTAACGCGAATGTCAGAGGGGATATGGGGTTTGTTTCTTGTGTGGAATTGGTCAAGACAAAAGGTAGCAGTTGGGGAGGACAGTTTGTAACAAATGTGTTCGAGAGGATTGATGGTCAATGGTTTATCTCTGTTCATCATGCTTCACCTATAGACTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SnoaL_3 UVR

Protein Analysis

264

Amino Acids

29.49

Weight (kDa)

5.76

Isoelectric Point (pI)

38.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SnoaL_3	PF13474	144 - 260	6.3e-24	SnoaL-like domain
DUF4440	PF14534	145 - 251	3.8e-06	Domain of unknown function (DUF4440)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009353)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09250 AT3G09250 AT3G09250
fragaria_vesca	FvH4_6g12490 FvH4_6g12490
malus_domestica	MD04G1141800.v1.1 MD12G1156400.v1.1
prunus_persica	Prupe.6G267200_v2.0.a1 Prupe.6G267200_v2.0.a1 Prupe.6G267200_v2.0.a1 Prupe.6G267200_v2.0.a1
pyrus_communis	pycom12g14850
rosa_chinensis	RchiOBHm_Chr3g0464311
rosa_laevigata	RLG00000024709
rosa_multiflora	Rmu_co8475005.1_g000001 Rmu_sc0007811.1_g000002
rosa_roxburghii	Rroxscaffold_6G00415820
rosa_rugosa	Rorug03G0071300
rosa_samantha	Rh3BG133400 Rh3CG135700 Rh3DG134900
rosa_wichuraiana	Rw3G010930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	118, 334, 638
AciI	CCGC	3 cut(s)	118, 334, 409
AclWI	GGATC	3 cut(s)	22, 345, 483
AcsI	RAATTY	2 cut(s)	442, 602
AcuI	CTGAAG	1 cut(s)	644
AcvI	CACGTG	1 cut(s)	542
AfaI	GTAC	1 cut(s)	528
AfiI	CCNNNNNNNGG	2 cut(s)	236, 333
AgsI	TTSAA	2 cut(s)	152, 282
AleI	CACNNNNGTG	1 cut(s)	534
AluBI	AGCT	4 cut(s)	63, 291, 576, 622
AluI	AGCT	4 cut(s)	63, 291, 576, 622
Alw21I	GWGCWC	1 cut(s)	541
Alw44I	GTGCAC	1 cut(s)	537
AlwI	GGATC	3 cut(s)	22, 345, 483
Ama87I	CYCGRG	1 cut(s)	532
AoxI	GGCC	1 cut(s)	501
ApaLI	GTGCAC	1 cut(s)	537
ApeKI	GCWGC	3 cut(s)	377, 437, 482
ApoI	RAATTY	2 cut(s)	442, 602
Asp700I	GAANNNNTTC	1 cut(s)	40
AspS9I	GGNCC	1 cut(s)	501
AsuC2I	CCSGG	2 cut(s)	533, 534
AsuHPI	GGTGA	2 cut(s)	92, 768
AvaI	CYCGRG	1 cut(s)	532
BaeGI	GKGCMC	1 cut(s)	541
BbrPI	CACGTG	1 cut(s)	542
Bbv12I	GWGCWC	1 cut(s)	541
BbvI	GCAGC	3 cut(s)	389, 449, 469
BccI	CCATC	3 cut(s)	121, 179, 737
BceAI	ACGGC	1 cut(s)	52
BcnI	CCSGG	2 cut(s)	533, 534
BfaI	CTAG	2 cut(s)	341, 573
BfmI	CTRYAG	2 cut(s)	611, 780
BisI	GCNGC	3 cut(s)	378, 438, 483
BlsI	GCNGC	3 cut(s)	379, 439, 484
Bme1390I	CCNGG	2 cut(s)	533, 534
BmeT110I	CYCGRG	1 cut(s)	532
BmgT120I	GGNCC	1 cut(s)	501
BmrFI	CCNGG	2 cut(s)	533, 534
BmsI	GCATC	2 cut(s)	81, 307
BpmI	CTGGAG	1 cut(s)	201
Bpu10I	CCTNAGC	1 cut(s)	372
BpuMI	CCSGG	2 cut(s)	533, 534
BsaAI	YACGTR	2 cut(s)	542, 586
BsaBI	GATNNNNATC	1 cut(s)	189
BsaJI	CCNNGG	1 cut(s)	532
Bsc4I	CCNNNNNNNGG	2 cut(s)	236, 333
Bse3DI	GCAATG	2 cut(s)	351, 492
Bse8I	GATNNNNATC	1 cut(s)	189
BseDI	CCNNGG	1 cut(s)	532
BseGI	GGATG	6 cut(s)	96, 218, 322, 517, 568, 634
BseJI	GATNNNNATC	1 cut(s)	189
BseLI	CCNNNNNNNGG	2 cut(s)	236, 333
BseMI	GCAATG	2 cut(s)	351, 492
BseMII	CTCAG	1 cut(s)	306
BseRI	GAGGAG	1 cut(s)	374
BseSI	GKGCMC	1 cut(s)	541
BseXI	GCAGC	3 cut(s)	389, 449, 469
BseYI	CCCAGC	1 cut(s)	576
Bsh1236I	CGCG	3 cut(s)	118, 334, 638
Bsh1285I	CGRYCG	1 cut(s)	248
BshFI	GGCC	1 cut(s)	503
BsiEI	CGRYCG	1 cut(s)	248
BsiHKAI	GWGCWC	1 cut(s)	541
BsiHKCI	CYCGRG	1 cut(s)	532
BsiSI	CCGG	1 cut(s)	533
BslFI	GGGAC	1 cut(s)	593
BslI	CCNNNNNNNGG	2 cut(s)	236, 333
BsmFI	GGGAC	1 cut(s)	593
BsnI	GGCC	1 cut(s)	503
BsoBI	CYCGRG	1 cut(s)	532
Bsp1286I	GDGCHC	1 cut(s)	541
Bsp1407I	TGTACA	1 cut(s)	526
Bsp143I	GATC	4 cut(s)	14, 245, 337, 475
BspACI	CCGC	3 cut(s)	118, 334, 409
BspANI	GGCC	1 cut(s)	503
BspCNI	CTCAG	1 cut(s)	305
BspFNI	CGCG	3 cut(s)	118, 334, 638
BspPI	GGATC	3 cut(s)	22, 345, 483
BsrDI	GCAATG	2 cut(s)	351, 492
BsrGI	TGTACA	1 cut(s)	526
BssECI	CCNNGG	1 cut(s)	532
BssMI	GATC	4 cut(s)	14, 245, 337, 475
Bst4CI	ACNGT	1 cut(s)	714
Bst6I	CTCTTC	1 cut(s)	231
BstAUI	TGTACA	1 cut(s)	526
BstBAI	YACGTR	2 cut(s)	542, 586
BstC8I	GCNNGC	1 cut(s)	65
BstDEI	CTNAG	3 cut(s)	292, 372, 398
BstF5I	GGATG	6 cut(s)	96, 218, 322, 517, 568, 634
BstFNI	CGCG	3 cut(s)	118, 334, 638
BstKTI	GATC	4 cut(s)	17, 248, 340, 478
BstMBI	GATC	4 cut(s)	14, 245, 337, 475
BstMCI	CGRYCG	1 cut(s)	248
BstMWI	GCNNNNNNNGC	2 cut(s)	297, 377
BstNSI	RCATGY	1 cut(s)	78
BstSCI	CCNGG	2 cut(s)	531, 532
BstSFI	CTRYAG	2 cut(s)	611, 780
BstSLI	GKGCMC	1 cut(s)	541
BstSNI	TACGTA	1 cut(s)	586
BstUI	CGCG	3 cut(s)	118, 334, 638
BstV1I	GCAGC	3 cut(s)	389, 449, 469
BstX2I	RGATCY	3 cut(s)	14, 337, 475
BstYI	RGATCY	3 cut(s)	14, 337, 475
BsuRI	GGCC	1 cut(s)	503
BtgZI	GCGATG	1 cut(s)	99
BtsCI	GGATG	6 cut(s)	96, 218, 322, 517, 568, 634
BtsI	GCAGTG	1 cut(s)	268
BtsIMutI	CAGTG	1 cut(s)	268
Cac8I	GCNNGC	1 cut(s)	65
Cfr13I	GGNCC	1 cut(s)	501
Cfr9I	CCCGGG	1 cut(s)	532
Csp6I	GTAC	1 cut(s)	527
CviAII	CATG	4 cut(s)	11, 75, 258, 770
CviJI	RGCY	6 cut(s)	63, 291, 482, 503, 576, 622
CviKI_1	RGCY	6 cut(s)	63, 291, 482, 503, 576, 622
CviQI	GTAC	1 cut(s)	527
DdeI	CTNAG	3 cut(s)	292, 372, 398
DpnI	GATC	4 cut(s)	16, 247, 339, 477
DpnII	GATC	4 cut(s)	14, 245, 337, 475
Eam1104I	CTCTTC	1 cut(s)	231
EarI	CTCTTC	1 cut(s)	231
Eco105I	TACGTA	1 cut(s)	586
Eco57I	CTGAAG	1 cut(s)	644
Eco72I	CACGTG	1 cut(s)	542
Eco88I	CYCGRG	1 cut(s)	532
FaeI	CATG	4 cut(s)	14, 78, 261, 773
FaqI	GGGAC	1 cut(s)	593
FatI	CATG	4 cut(s)	10, 74, 257, 769
FauI	CCCGC	2 cut(s)	327, 402
Fnu4HI	GCNGC	3 cut(s)	378, 438, 483
FokI	GGATG	6 cut(s)	103, 205, 329, 524, 575, 641
Fsp4HI	GCNGC	3 cut(s)	378, 438, 483
FspBI	CTAG	2 cut(s)	341, 573
GluI	GCNGC	3 cut(s)	378, 438, 483
GsaI	CCCAGC	1 cut(s)	580
GsuI	CTGGAG	1 cut(s)	201
HaeIII	GGCC	1 cut(s)	503
HapII	CCGG	1 cut(s)	533
Hin1II	CATG	4 cut(s)	14, 78, 261, 773
HincII	GTYRAC	1 cut(s)	634
HindII	GTYRAC	1 cut(s)	634
HinfI	GANTC	2 cut(s)	278, 458
HpaI	GTTAAC	1 cut(s)	634
HpaII	CCGG	1 cut(s)	533
HphI	GGTGA	2 cut(s)	92, 768
Hpy166II	GTNNAC	4 cut(s)	527, 529, 539, 634
Hpy188I	TCNGA	3 cut(s)	195, 467, 647
Hpy188III	TCNNGA	6 cut(s)	149, 180, 341, 447, 685, 733
Hpy8I	GTNNAC	4 cut(s)	527, 529, 539, 634
HpyAV	CCTTC	1 cut(s)	619
HpyCH4III	ACNGT	1 cut(s)	714
HpyCH4IV	ACGT	2 cut(s)	541, 585
HpyCH4V	TGCA	7 cut(s)	74, 261, 320, 356, 485, 490, 539
HpyF10VI	GCNNNNNNNGC	2 cut(s)	297, 377
HpyF3I	CTNAG	3 cut(s)	292, 372, 398
HpySE526I	ACGT	2 cut(s)	541, 585
Hsp92II	CATG	4 cut(s)	14, 78, 261, 773
KspAI	GTTAAC	1 cut(s)	634
Kzo9I	GATC	4 cut(s)	14, 245, 337, 475
LpnPI	CCDG	6 cut(s)	116, 165, 222, 464, 546, 562
Lsp1109I	GCAGC	3 cut(s)	389, 449, 469
LweI	GCATC	2 cut(s)	81, 307
MaeI	CTAG	2 cut(s)	341, 573
MaeII	ACGT	2 cut(s)	541, 585
MaeIII	GTNAC	1 cut(s)	718
MalI	GATC	4 cut(s)	16, 247, 339, 477
MboI	GATC	4 cut(s)	14, 245, 337, 475
MboII	GAAGA	1 cut(s)	218
MflI	RGATCY	3 cut(s)	14, 337, 475
MhlI	GDGCHC	1 cut(s)	541
MluCI	AATT	6 cut(s)	127, 197, 384, 442, 602, 677
MlyI	GAGTC	1 cut(s)	467
MnlI	CCTC	9 cut(s)	149, 232, 244, 352, 406, 553, 641, 701, 729
MroXI	GAANNNNTTC	1 cut(s)	40
MseI	TTAA	6 cut(s)	29, 48, 57, 251, 329, 633
MslI	CAYNNNNRTG	1 cut(s)	534
MspI	CCGG	1 cut(s)	533
MspR9I	CCNGG	2 cut(s)	533, 534
MvnI	CGCG	3 cut(s)	118, 334, 638
MwoI	GCNNNNNNNGC	2 cut(s)	297, 377
NciI	CCSGG	2 cut(s)	533, 534
NdeII	GATC	4 cut(s)	14, 245, 337, 475
NlaIII	CATG	4 cut(s)	14, 78, 261, 773
NspI	RCATGY	1 cut(s)	78
OliI	CACNNNNGTG	1 cut(s)	534
PdmI	GAANNNNTTC	1 cut(s)	40
PfeI	GAWTC	1 cut(s)	278
PkrI	GCNGC	3 cut(s)	379, 439, 484
Ple19I	CGATCG	1 cut(s)	248
PleI	GAGTC	1 cut(s)	466
PmaCI	CACGTG	1 cut(s)	542
PmlI	CACGTG	1 cut(s)	542
PpsI	GAGTC	1 cut(s)	466
Ppu21I	YACGTR	2 cut(s)	542, 586
PspCI	CACGTG	1 cut(s)	542
PspFI	CCCAGC	1 cut(s)	576
PspPI	GGNCC	1 cut(s)	501
PsuI	RGATCY	3 cut(s)	14, 337, 475
PvuI	CGATCG	1 cut(s)	248
RsaI	GTAC	1 cut(s)	528
RsaNI	GTAC	1 cut(s)	527
RseI	CAYNNNNRTG	1 cut(s)	534
SaqAI	TTAA	6 cut(s)	29, 48, 57, 251, 329, 633
SatI	GCNGC	3 cut(s)	378, 438, 483
Sau3AI	GATC	4 cut(s)	14, 245, 337, 475
Sau96I	GGNCC	1 cut(s)	501
SchI	GAGTC	1 cut(s)	467
ScrFI	CCNGG	2 cut(s)	533, 534
SduI	GDGCHC	1 cut(s)	541
SfaNI	GCATC	2 cut(s)	81, 307
SfcI	CTRYAG	2 cut(s)	611, 780
SmaI	CCCGGG	1 cut(s)	534
SmiMI	CAYNNNNRTG	1 cut(s)	534
SnaBI	TACGTA	1 cut(s)	586
Sse9I	AATT	6 cut(s)	127, 197, 384, 442, 602, 677
SsiI	CCGC	3 cut(s)	118, 334, 409
SspMI	CTAG	2 cut(s)	341, 573
StyD4I	CCNGG	2 cut(s)	531, 532
TaaI	ACNGT	1 cut(s)	714
TaiI	ACGT	2 cut(s)	544, 588
TaqI	TCGA	2 cut(s)	448, 732
TasI	AATT	6 cut(s)	127, 197, 384, 442, 602, 677
TatI	WGTACW	1 cut(s)	526
TfiI	GAWTC	1 cut(s)	278
Tru1I	TTAA	6 cut(s)	29, 48, 57, 251, 329, 633
Tru9I	TTAA	6 cut(s)	29, 48, 57, 251, 329, 633
TscAI	CASTG	1 cut(s)	268
TseI	GCWGC	3 cut(s)	377, 437, 482
TspDTI	ATGAA	4 cut(s)	86, 528, 615, 755
TspMI	CCCGGG	1 cut(s)	532
TspRI	CASTG	1 cut(s)	268
VneI	GTGCAC	1 cut(s)	537
XapI	RAATTY	2 cut(s)	442, 602
XbaI	TCTAGA	1 cut(s)	340
XceI	RCATGY	1 cut(s)	78
XmaI	CCCGGG	1 cut(s)	532
XmnI	GAANNNNTTC	1 cut(s)	40
XspI	CTAG	2 cut(s)	341, 573

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.