Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0009353

Physical Location & Seq

Genomic Coordinates Reverse (-)

25522559 .. 25524116

Gene Structure 1558 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G267200.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGGCGCTTCATGGATCTAGTTACTGCTTAAATGGAAATGGTTCTTTTAGGGAATTTTACAGCTTGCCGTGTTCCTGCAATTACAGTTTCGGGATGCTTCATCATCTCTCTTCACCTTCTTTAAAGCAATACAATTTAGTTGTAGCAAAGACGTTTGGAAGGGGGAATAAAAATCAGTTTTTGCCTGGGGATCGTCGTATCAAATTGCGGACTGAAAGACCCACATCCTCTATTCAGGCCTCTGGTTTGCGGTTATTAAGACCACGTAATGTGAAAGGCGATGACTCAAAGGATAATGCAAGTGGCGAAAGCATCTTATTGGATGTGCAAACCTTGGAGCGTGATCTAGACATTGCCATTGCAGAGGAGAACTATGCTAAAGCAGCACAAATTAGGGATAGCCTCAAACTTCTGCGCCAAGATAGTACAACTTCTGTTTTAGCAGCAAATGCTCAATTTTATGAGTCATTCAGGATTGGGGATCTGGCTGCCATGCAAGCCCTTTGGGCCAACCGGAAAGAAGTCTGTTGTGTGCACCCCGGTGCACGCGGGATATATGGTTATGAAGATGTTATGACTAGCTGGGACTATGTATGGGCGAACTATGAATTCCCGCTAGAGATTGAGCTGAAAGATGTCAATGTTCGTGTTATAGGGGATGTAGGGTATGTTTCTTGTGTGGAATTGGTTAAGACAAAGGGTAGCAGTTGGGGGGGACAGTTTGCAACAAATGTGTTTGAGAGAATTGATGGTAAATGGTTTATCTGCATTCACCATGCTTCAGTTCTTGAGTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SnoaL_3 UVR

Protein Analysis

266

Amino Acids

29.72

Weight (kDa)

6.99

Isoelectric Point (pI)

31.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009353)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09250 AT3G09250 AT3G09250
fragaria_vesca	FvH4_6g12490 FvH4_6g12490
malus_domestica	MD04G1141800.v1.1 MD12G1156400.v1.1
prunus_persica	Prupe.6G267200_v2.0.a1 Prupe.6G267200_v2.0.a1 Prupe.6G267200_v2.0.a1 Prupe.6G267200_v2.0.a1
pyrus_communis	pycom12g14850
rosa_chinensis	RchiOBHm_Chr3g0464311
rosa_laevigata	RLG00000024709
rosa_multiflora	Rmu_co8475005.1_g000001 Rmu_sc0007811.1_g000002
rosa_roxburghii	Rroxscaffold_6G00415820
rosa_rugosa	Rorug03G0071300
rosa_samantha	Rh3BG133400 Rh3CG135700 Rh3DG134900
rosa_wichuraiana	Rw3G010930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	549
AciI	CCGC	4 cut(s)	208, 250, 549, 614
AclWI	GGATC	3 cut(s)	22, 198, 489
AcsI	RAATTY	2 cut(s)	53, 608
AcuI	CTGAAG	1 cut(s)	765
AfaI	GTAC	1 cut(s)	427
AjnI	CCWGG	1 cut(s)	184
AleI	CACNNNNGTG	1 cut(s)	540
AluBI	AGCT	3 cut(s)	63, 582, 628
AluI	AGCT	3 cut(s)	63, 582, 628
Alw21I	GWGCWC	2 cut(s)	537, 547
Alw44I	GTGCAC	2 cut(s)	533, 543
AlwI	GGATC	3 cut(s)	22, 198, 489
AoxI	GGCC	2 cut(s)	237, 507
ApaLI	GTGCAC	2 cut(s)	533, 543
ApeKI	GCWGC	3 cut(s)	383, 443, 488
ApoI	RAATTY	2 cut(s)	53, 608
Asp700I	GAANNNNTTC	1 cut(s)	40
AspLEI	GCGC	2 cut(s)	7, 417
AspS9I	GGNCC	1 cut(s)	507
AsuC2I	CCSGG	1 cut(s)	540
AsuHPI	GGTGA	2 cut(s)	105, 764
BaeGI	GKGCMC	2 cut(s)	537, 547
Bbv12I	GWGCWC	2 cut(s)	537, 547
BbvI	GCAGC	3 cut(s)	395, 455, 475
BccI	CCATC	1 cut(s)	743
BceAI	ACGGC	1 cut(s)	52
BciT130I	CCWGG	1 cut(s)	186
BcnI	CCSGG	1 cut(s)	540
BfaI	CTAG	4 cut(s)	18, 347, 579, 617
BfoI	RGCGCY	1 cut(s)	8
BglI	GCCNNNNNGGC	1 cut(s)	506
BisI	GCNGC	3 cut(s)	384, 444, 489
BlsI	GCNGC	3 cut(s)	385, 445, 490
Bme1390I	CCNGG	2 cut(s)	186, 540
BmgT120I	GGNCC	1 cut(s)	507
BmrFI	CCNGG	2 cut(s)	186, 540
BmsI	GCATC	2 cut(s)	84, 321
BpuMI	CCSGG	1 cut(s)	540
BsaAI	YACGTR	1 cut(s)	266
BsaJI	CCNNGG	3 cut(s)	185, 333, 538
BsaWI	WCCGGW	1 cut(s)	513
Bse3DI	GCAATG	2 cut(s)	351, 357
BseBI	CCWGG	1 cut(s)	186
BseDI	CCNNGG	3 cut(s)	185, 333, 538
BseGI	GGATG	4 cut(s)	99, 224, 328, 664
BseMI	GCAATG	2 cut(s)	351, 357
BseRI	GAGGAG	1 cut(s)	380
BseSI	GKGCMC	2 cut(s)	537, 547
BseXI	GCAGC	3 cut(s)	395, 455, 475
BseYI	CCCAGC	1 cut(s)	582
Bsh1236I	CGCG	1 cut(s)	549
BshFI	GGCC	2 cut(s)	239, 509
BsiHKAI	GWGCWC	2 cut(s)	537, 547
BsiSI	CCGG	2 cut(s)	514, 540
BslFI	GGGAC	2 cut(s)	599, 729
BsmFI	GGGAC	2 cut(s)	599, 729
BsmI	GAATGC	1 cut(s)	768
BsnI	GGCC	2 cut(s)	239, 509
Bsp1286I	GDGCHC	2 cut(s)	537, 547
Bsp143I	GATC	4 cut(s)	14, 190, 343, 481
BspACI	CCGC	4 cut(s)	208, 250, 549, 614
BspANI	GGCC	2 cut(s)	239, 509
BspFNI	CGCG	1 cut(s)	549
BspPI	GGATC	3 cut(s)	22, 198, 489
BsrDI	GCAATG	2 cut(s)	351, 357
BssECI	CCNNGG	3 cut(s)	185, 333, 538
BssMI	GATC	4 cut(s)	14, 190, 343, 481
BssT1I	CCWWGG	1 cut(s)	333
Bst2UI	CCWGG	1 cut(s)	186
Bst4CI	ACNGT	2 cut(s)	86, 720
Bst6I	CTCTTC	1 cut(s)	115
BstAPI	GCANNNNNTGC	1 cut(s)	449
BstBAI	YACGTR	1 cut(s)	266
BstC8I	GCNNGC	3 cut(s)	65, 498, 547
BstF5I	GGATG	4 cut(s)	99, 224, 328, 664
BstFNI	CGCG	1 cut(s)	549
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	2 cut(s)	7, 417
BstKTI	GATC	4 cut(s)	17, 193, 346, 484
BstMBI	GATC	4 cut(s)	14, 190, 343, 481
BstMWI	GCNNNNNNNGC	4 cut(s)	383, 449, 497, 506
BstNI	CCWGG	1 cut(s)	186
BstSCI	CCNGG	2 cut(s)	184, 538
BstSLI	GKGCMC	2 cut(s)	537, 547
BstUI	CGCG	1 cut(s)	549
BstV1I	GCAGC	3 cut(s)	395, 455, 475
BstX2I	RGATCY	2 cut(s)	14, 481
BstYI	RGATCY	2 cut(s)	14, 481
BsuRI	GGCC	2 cut(s)	239, 509
BtgZI	GCGATG	1 cut(s)	294
BtsCI	GGATG	4 cut(s)	99, 224, 328, 664
Cac8I	GCNNGC	3 cut(s)	65, 498, 547
CfoI	GCGC	2 cut(s)	7, 417
Cfr13I	GGNCC	1 cut(s)	507
Csp6I	GTAC	1 cut(s)	426
CviAII	CATG	3 cut(s)	11, 493, 776
CviJI	RGCY	8 cut(s)	63, 239, 402, 488, 500, 509, 582, 628
CviKI_1	RGCY	8 cut(s)	63, 239, 402, 488, 500, 509, 582, 628
CviQI	GTAC	1 cut(s)	426
DpnI	GATC	4 cut(s)	16, 192, 345, 483
DpnII	GATC	4 cut(s)	14, 190, 343, 481
DraI	TTTAAA	1 cut(s)	123
Eam1104I	CTCTTC	1 cut(s)	115
EarI	CTCTTC	1 cut(s)	115
Eco130I	CCWWGG	1 cut(s)	333
Eco147I	AGGCCT	1 cut(s)	239
Eco57I	CTGAAG	1 cut(s)	765
EcoRI	GAATTC	1 cut(s)	608
EcoRII	CCWGG	1 cut(s)	184
EcoT14I	CCWWGG	1 cut(s)	333
ErhI	CCWWGG	1 cut(s)	333
FaeI	CATG	3 cut(s)	14, 496, 779
FaqI	GGGAC	2 cut(s)	599, 729
FatI	CATG	3 cut(s)	10, 492, 775
FauI	CCCGC	2 cut(s)	542, 621
Fnu4HI	GCNGC	3 cut(s)	384, 444, 489
FokI	GGATG	4 cut(s)	106, 211, 335, 671
Fsp4HI	GCNGC	3 cut(s)	384, 444, 489
FspBI	CTAG	4 cut(s)	18, 347, 579, 617
GlaI	GCGC	2 cut(s)	6, 416
GluI	GCNGC	3 cut(s)	384, 444, 489
GsaI	CCCAGC	1 cut(s)	586
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	2 cut(s)	239, 509
HapII	CCGG	2 cut(s)	514, 540
HhaI	GCGC	2 cut(s)	7, 417
Hin1II	CATG	3 cut(s)	14, 496, 779
Hin6I	GCGC	2 cut(s)	5, 415
HinP1I	GCGC	2 cut(s)	5, 415
HinfI	GANTC	2 cut(s)	284, 464
HpaII	CCGG	2 cut(s)	514, 540
HphI	GGTGA	2 cut(s)	105, 764
Hpy166II	GTNNAC	2 cut(s)	535, 545
Hpy188III	TCNNGA	4 cut(s)	91, 347, 472, 788
Hpy8I	GTNNAC	2 cut(s)	535, 545
Hpy99I	CGWCG	1 cut(s)	198
HpyAV	CCTTC	2 cut(s)	126, 153
HpyCH4III	ACNGT	2 cut(s)	86, 720
HpyCH4IV	ACGT	2 cut(s)	152, 265
HpyCH4V	TGCA	9 cut(s)	78, 299, 328, 362, 496, 535, 545, 725, 768
HpyF10VI	GCNNNNNNNGC	4 cut(s)	383, 449, 497, 506
HpySE526I	ACGT	2 cut(s)	152, 265
Hsp92II	CATG	3 cut(s)	14, 496, 779
HspAI	GCGC	2 cut(s)	5, 415
Kzo9I	GATC	4 cut(s)	14, 190, 343, 481
LmnI	GCTCC	1 cut(s)	337
Lsp1109I	GCAGC	3 cut(s)	395, 455, 475
LweI	GCATC	2 cut(s)	84, 321
MaeI	CTAG	4 cut(s)	18, 347, 579, 617
MaeII	ACGT	2 cut(s)	152, 265
MaeIII	GTNAC	1 cut(s)	20
MalI	GATC	4 cut(s)	16, 192, 345, 483
MboI	GATC	4 cut(s)	14, 190, 343, 481
MboII	GAAGA	2 cut(s)	102, 578
MflI	RGATCY	2 cut(s)	14, 481
MhlI	GDGCHC	2 cut(s)	537, 547
MluCI	AATT	9 cut(s)	53, 79, 133, 203, 390, 455, 608, 683, 744
MlyI	GAGTC	2 cut(s)	278, 473
MnlI	CCTC	4 cut(s)	238, 250, 358, 413
MroXI	GAANNNNTTC	1 cut(s)	40
MseI	TTAA	4 cut(s)	29, 122, 257, 690
MslI	CAYNNNNRTG	1 cut(s)	540
MspI	CCGG	2 cut(s)	514, 540
MspR9I	CCNGG	2 cut(s)	186, 540
Mva1269I	GAATGC	1 cut(s)	768
MvaI	CCWGG	1 cut(s)	186
MvnI	CGCG	1 cut(s)	549
MwoI	GCNNNNNNNGC	4 cut(s)	383, 449, 497, 506
NciI	CCSGG	1 cut(s)	540
NdeII	GATC	4 cut(s)	14, 190, 343, 481
NlaIII	CATG	3 cut(s)	14, 496, 779
OliI	CACNNNNGTG	1 cut(s)	540
PceI	AGGCCT	1 cut(s)	239
PctI	GAATGC	1 cut(s)	768
PdmI	GAANNNNTTC	1 cut(s)	40
PkrI	GCNGC	3 cut(s)	385, 445, 490
PleI	GAGTC	2 cut(s)	278, 472
PpsI	GAGTC	2 cut(s)	278, 472
Ppu21I	YACGTR	1 cut(s)	266
Psp6I	CCWGG	1 cut(s)	184
PspFI	CCCAGC	1 cut(s)	582
PspGI	CCWGG	1 cut(s)	184
PspPI	GGNCC	1 cut(s)	507
PsuI	RGATCY	2 cut(s)	14, 481
RsaI	GTAC	1 cut(s)	427
RsaNI	GTAC	1 cut(s)	426
RseI	CAYNNNNRTG	1 cut(s)	540
SaqAI	TTAA	4 cut(s)	29, 122, 257, 690
SatI	GCNGC	3 cut(s)	384, 444, 489
Sau3AI	GATC	4 cut(s)	14, 190, 343, 481
Sau96I	GGNCC	1 cut(s)	507
SchI	GAGTC	2 cut(s)	278, 473
ScrFI	CCNGG	2 cut(s)	186, 540
SduI	GDGCHC	2 cut(s)	537, 547
SetI	ASST	7 cut(s)	65, 118, 155, 268, 335, 584, 630
SfaNI	GCATC	2 cut(s)	84, 321
SmiMI	CAYNNNNRTG	1 cut(s)	540
SmlI	CTYRAG	1 cut(s)	788
SmoI	CTYRAG	1 cut(s)	788
Sse9I	AATT	9 cut(s)	53, 79, 133, 203, 390, 455, 608, 683, 744
SseBI	AGGCCT	1 cut(s)	239
SsiI	CCGC	4 cut(s)	208, 250, 549, 614
SspMI	CTAG	4 cut(s)	18, 347, 579, 617
StuI	AGGCCT	1 cut(s)	239
StyD4I	CCNGG	2 cut(s)	184, 538
StyI	CCWWGG	1 cut(s)	333
TaaI	ACNGT	2 cut(s)	86, 720
TaiI	ACGT	2 cut(s)	155, 268
TasI	AATT	9 cut(s)	53, 79, 133, 203, 390, 455, 608, 683, 744
TatI	WGTACW	1 cut(s)	425
Tru1I	TTAA	4 cut(s)	29, 122, 257, 690
Tru9I	TTAA	4 cut(s)	29, 122, 257, 690
TseI	GCWGC	3 cut(s)	383, 443, 488
TspDTI	ATGAA	3 cut(s)	89, 579, 621
VneI	GTGCAC	2 cut(s)	533, 543
XapI	RAATTY	2 cut(s)	53, 608
XbaI	TCTAGA	1 cut(s)	346
XmnI	GAANNNNTTC	1 cut(s)	40
XspI	CTAG	4 cut(s)	18, 347, 579, 617

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.