Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8475005.1

Orthogroup ID

OG0009353

Physical Location & Seq

Genomic Coordinates Forward (+)

694 .. 1560

Gene Structure 867 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8475005.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

atgcttcatcatctgtctttaccatcgaggaaacacaatttagttgtagcaaatactcttgaaagagggcatagatttcagtttttgcctggagatggtcgtctcaaattgcgaactgaacaatccacatcctctcttcccacctcgggtttgcgatcgttaaaaccatgcagtgcgaaatgtgatgattcaaaggatagctcagttagcgaaaatatcatattggatgcagaaaccttaacgcgggacctagatattgccattgcagaggagaactatgctaaggcagcagaaattagggatagactaagacttctgcgggaggatagtatgacttctgttttagcagcaaattctcgattttacgagtcattcagaataggggatctggctgcaatgcaatctctttgggccaaacgggatgaagtctgttgtgtacacccgggtgcacgtgggatatatggttatgaggatgttatgactagctgggactacgtatgggcgaactatgaatttccactacagattgagctgaaggatgttaacgctaatgttagaggggatatggggtttgtttcttgtgtggaattggtcaagacaaaaggtagcagttggggaggacagtttgtaacaaatgtgttcgagaggattgatggtcaatggtttatctctgttcatcatgcttcacctatagacttgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SnoaL_3 UVR

Protein Analysis

233

Amino Acids

26.26

Weight (kDa)

5.82

Isoelectric Point (pI)

41.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009353)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09250 AT3G09250 AT3G09250
fragaria_vesca	FvH4_6g12490 FvH4_6g12490
malus_domestica	MD04G1141800.v1.1 MD12G1156400.v1.1
prunus_persica	Prupe.6G267200_v2.0.a1 Prupe.6G267200_v2.0.a1 Prupe.6G267200_v2.0.a1 Prupe.6G267200_v2.0.a1
pyrus_communis	pycom12g14850
rosa_chinensis	RchiOBHm_Chr3g0464311
rosa_laevigata	RLG00000024709
rosa_multiflora	Rmu_co8475005.1_g000001 Rmu_sc0007811.1_g000002
rosa_roxburghii	Rroxscaffold_6G00415820
rosa_rugosa	Rorug03G0071300
rosa_samantha	Rh3BG133400 Rh3CG135700 Rh3DG134900
rosa_wichuraiana	Rw3G010930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	244
AciI	CCGC	2 cut(s)	244, 319
AclWI	GGATC	1 cut(s)	393
AcsI	RAATTY	2 cut(s)	352, 512
AcuI	CTGAAG	1 cut(s)	554
AcvI	CACGTG	1 cut(s)	452
AfaI	GTAC	1 cut(s)	438
AfiI	CCNNNNNNNGG	3 cut(s)	95, 146, 243
AgsI	TTSAA	2 cut(s)	62, 192
AjnI	CCWGG	1 cut(s)	88
AleI	CACNNNNGTG	1 cut(s)	444
AluBI	AGCT	3 cut(s)	201, 486, 532
AluI	AGCT	3 cut(s)	201, 486, 532
Alw21I	GWGCWC	1 cut(s)	451
Alw26I	GTCTC	1 cut(s)	107
Alw44I	GTGCAC	1 cut(s)	447
AlwI	GGATC	1 cut(s)	393
Ama87I	CYCGRG	2 cut(s)	145, 442
AoxI	GGCC	1 cut(s)	411
ApaLI	GTGCAC	1 cut(s)	447
ApeKI	GCWGC	3 cut(s)	287, 347, 392
ApoI	RAATTY	2 cut(s)	352, 512
AspS9I	GGNCC	2 cut(s)	247, 411
AsuC2I	CCSGG	2 cut(s)	443, 444
AsuHPI	GGTGA	1 cut(s)	678
AvaI	CYCGRG	2 cut(s)	145, 442
AvaII	GGWCC	1 cut(s)	247
BaeGI	GKGCMC	1 cut(s)	451
BbrPI	CACGTG	1 cut(s)	452
Bbv12I	GWGCWC	1 cut(s)	451
BbvI	GCAGC	3 cut(s)	299, 359, 379
BccI	CCATC	3 cut(s)	31, 89, 647
BciT130I	CCWGG	1 cut(s)	90
BcnI	CCSGG	2 cut(s)	443, 444
BcoDI	GTCTC	1 cut(s)	107
BfaI	CTAG	2 cut(s)	251, 483
BfmI	CTRYAG	2 cut(s)	521, 690
BisI	GCNGC	3 cut(s)	288, 348, 393
BlsI	GCNGC	3 cut(s)	289, 349, 394
Bme1390I	CCNGG	3 cut(s)	90, 443, 444
Bme18I	GGWCC	1 cut(s)	247
BmeT110I	CYCGRG	2 cut(s)	145, 442
BmgT120I	GGNCC	2 cut(s)	247, 411
BmiI	GGNNCC	1 cut(s)	248
BmrFI	CCNGG	3 cut(s)	90, 443, 444
BmsI	GCATC	1 cut(s)	217
BpmI	CTGGAG	1 cut(s)	111
Bpu10I	CCTNAGC	1 cut(s)	282
BpuMI	CCSGG	2 cut(s)	443, 444
BsaAI	YACGTR	2 cut(s)	452, 496
BsaJI	CCNNGG	2 cut(s)	144, 442
Bsc4I	CCNNNNNNNGG	3 cut(s)	95, 146, 243
Bse3DI	GCAATG	2 cut(s)	261, 402
BseBI	CCWGG	1 cut(s)	90
BseDI	CCNNGG	2 cut(s)	144, 442
BseGI	GGATG	5 cut(s)	128, 232, 427, 478, 544
BseLI	CCNNNNNNNGG	3 cut(s)	95, 146, 243
BseMI	GCAATG	2 cut(s)	261, 402
BseMII	CTCAG	1 cut(s)	216
BseRI	GAGGAG	1 cut(s)	284
BseSI	GKGCMC	1 cut(s)	451
BseXI	GCAGC	3 cut(s)	299, 359, 379
BseYI	CCCAGC	1 cut(s)	486
Bsh1236I	CGCG	1 cut(s)	244
Bsh1285I	CGRYCG	1 cut(s)	158
BshFI	GGCC	1 cut(s)	413
BsiEI	CGRYCG	1 cut(s)	158
BsiHKAI	GWGCWC	1 cut(s)	451
BsiHKCI	CYCGRG	2 cut(s)	145, 442
BsiSI	CCGG	1 cut(s)	443
BslFI	GGGAC	2 cut(s)	260, 503
BslI	CCNNNNNNNGG	3 cut(s)	95, 146, 243
BsmAI	GTCTC	1 cut(s)	107
BsmBI	CGTCTC	1 cut(s)	107
BsmFI	GGGAC	2 cut(s)	260, 503
BsnI	GGCC	1 cut(s)	413
BsoBI	CYCGRG	2 cut(s)	145, 442
Bsp1286I	GDGCHC	1 cut(s)	451
Bsp1407I	TGTACA	1 cut(s)	436
Bsp143I	GATC	2 cut(s)	155, 385
BspACI	CCGC	2 cut(s)	244, 319
BspANI	GGCC	1 cut(s)	413
BspCNI	CTCAG	1 cut(s)	215
BspFNI	CGCG	1 cut(s)	244
BspLI	GGNNCC	1 cut(s)	248
BspPI	GGATC	1 cut(s)	393
BsrDI	GCAATG	2 cut(s)	261, 402
BsrGI	TGTACA	1 cut(s)	436
BssECI	CCNNGG	2 cut(s)	144, 442
BssMI	GATC	2 cut(s)	155, 385
Bst2UI	CCWGG	1 cut(s)	90
Bst4CI	ACNGT	1 cut(s)	624
Bst6I	CTCTTC	1 cut(s)	141
BstAUI	TGTACA	1 cut(s)	436
BstBAI	YACGTR	2 cut(s)	452, 496
BstDEI	CTNAG	3 cut(s)	202, 282, 308
BstF5I	GGATG	5 cut(s)	128, 232, 427, 478, 544
BstFNI	CGCG	1 cut(s)	244
BstKTI	GATC	2 cut(s)	158, 388
BstMAI	GTCTC	1 cut(s)	107
BstMBI	GATC	2 cut(s)	155, 385
BstMCI	CGRYCG	1 cut(s)	158
BstMWI	GCNNNNNNNGC	2 cut(s)	207, 287
BstNI	CCWGG	1 cut(s)	90
BstSCI	CCNGG	3 cut(s)	88, 441, 442
BstSFI	CTRYAG	2 cut(s)	521, 690
BstSLI	GKGCMC	1 cut(s)	451
BstSNI	TACGTA	1 cut(s)	496
BstUI	CGCG	1 cut(s)	244
BstV1I	GCAGC	3 cut(s)	299, 359, 379
BstX2I	RGATCY	1 cut(s)	385
BstYI	RGATCY	1 cut(s)	385
BsuRI	GGCC	1 cut(s)	413
BtsCI	GGATG	5 cut(s)	128, 232, 427, 478, 544
BtsI	GCAGTG	1 cut(s)	178
BtsIMutI	CAGTG	1 cut(s)	178
Cfr13I	GGNCC	2 cut(s)	247, 411
Cfr9I	CCCGGG	1 cut(s)	442
Csp6I	GTAC	1 cut(s)	437
CviAII	CATG	2 cut(s)	168, 680
CviJI	RGCY	5 cut(s)	201, 392, 413, 486, 532
CviKI_1	RGCY	5 cut(s)	201, 392, 413, 486, 532
CviQI	GTAC	1 cut(s)	437
DdeI	CTNAG	3 cut(s)	202, 282, 308
DpnI	GATC	2 cut(s)	157, 387
DpnII	GATC	2 cut(s)	155, 385
Eam1104I	CTCTTC	1 cut(s)	141
EarI	CTCTTC	1 cut(s)	141
Eco105I	TACGTA	1 cut(s)	496
Eco47I	GGWCC	1 cut(s)	247
Eco57I	CTGAAG	1 cut(s)	554
Eco72I	CACGTG	1 cut(s)	452
Eco88I	CYCGRG	2 cut(s)	145, 442
EcoO109I	RGGNCCY	1 cut(s)	247
EcoRII	CCWGG	1 cut(s)	88
Esp3I	CGTCTC	1 cut(s)	107
FaeI	CATG	2 cut(s)	171, 683
FaqI	GGGAC	2 cut(s)	260, 503
FatI	CATG	2 cut(s)	167, 679
FauI	CCCGC	2 cut(s)	237, 312
Fnu4HI	GCNGC	3 cut(s)	288, 348, 393
FokI	GGATG	5 cut(s)	115, 239, 434, 485, 551
Fsp4HI	GCNGC	3 cut(s)	288, 348, 393
FspBI	CTAG	2 cut(s)	251, 483
GluI	GCNGC	3 cut(s)	288, 348, 393
GsaI	CCCAGC	1 cut(s)	490
GsuI	CTGGAG	1 cut(s)	111
HaeIII	GGCC	1 cut(s)	413
HapII	CCGG	1 cut(s)	443
Hin1II	CATG	2 cut(s)	171, 683
HincII	GTYRAC	1 cut(s)	544
HindII	GTYRAC	1 cut(s)	544
HinfI	GANTC	2 cut(s)	188, 368
HpaI	GTTAAC	1 cut(s)	544
HpaII	CCGG	1 cut(s)	443
HphI	GGTGA	1 cut(s)	678
Hpy166II	GTNNAC	4 cut(s)	437, 439, 449, 544
Hpy188I	TCNGA	1 cut(s)	377
Hpy188III	TCNNGA	4 cut(s)	59, 357, 595, 643
Hpy8I	GTNNAC	4 cut(s)	437, 439, 449, 544
HpyAV	CCTTC	1 cut(s)	529
HpyCH4III	ACNGT	1 cut(s)	624
HpyCH4IV	ACGT	2 cut(s)	451, 495
HpyCH4V	TGCA	6 cut(s)	171, 230, 266, 395, 400, 449
HpyF10VI	GCNNNNNNNGC	2 cut(s)	207, 287
HpyF3I	CTNAG	3 cut(s)	202, 282, 308
HpySE526I	ACGT	2 cut(s)	451, 495
Hsp92II	CATG	2 cut(s)	171, 683
KspAI	GTTAAC	1 cut(s)	544
Kzo9I	GATC	2 cut(s)	155, 385
LpnPI	CCDG	5 cut(s)	75, 102, 374, 456, 472
Lsp1109I	GCAGC	3 cut(s)	299, 359, 379
LweI	GCATC	1 cut(s)	217
MaeI	CTAG	2 cut(s)	251, 483
MaeII	ACGT	2 cut(s)	451, 495
MaeIII	GTNAC	1 cut(s)	628
MalI	GATC	2 cut(s)	157, 387
MboI	GATC	2 cut(s)	155, 385
MboII	GAAGA	1 cut(s)	128
MflI	RGATCY	1 cut(s)	385
MhlI	GDGCHC	1 cut(s)	451
MluCI	AATT	6 cut(s)	37, 107, 294, 352, 512, 587
MlyI	GAGTC	1 cut(s)	377
MseI	TTAA	3 cut(s)	161, 239, 543
MslI	CAYNNNNRTG	1 cut(s)	444
MspI	CCGG	1 cut(s)	443
MspR9I	CCNGG	3 cut(s)	90, 443, 444
MvaI	CCWGG	1 cut(s)	90
MvnI	CGCG	1 cut(s)	244
MwoI	GCNNNNNNNGC	2 cut(s)	207, 287
NciI	CCSGG	2 cut(s)	443, 444
NdeII	GATC	2 cut(s)	155, 385
NlaIII	CATG	2 cut(s)	171, 683
NlaIV	GGNNCC	1 cut(s)	248
OliI	CACNNNNGTG	1 cut(s)	444
PfeI	GAWTC	1 cut(s)	188
PkrI	GCNGC	3 cut(s)	289, 349, 394
Ple19I	CGATCG	1 cut(s)	158
PleI	GAGTC	1 cut(s)	376
PmaCI	CACGTG	1 cut(s)	452
PmlI	CACGTG	1 cut(s)	452
PpsI	GAGTC	1 cut(s)	376
Ppu21I	YACGTR	2 cut(s)	452, 496
PpuMI	RGGWCCY	1 cut(s)	247
Psp5II	RGGWCCY	1 cut(s)	247
Psp6I	CCWGG	1 cut(s)	88
PspCI	CACGTG	1 cut(s)	452
PspFI	CCCAGC	1 cut(s)	486
PspGI	CCWGG	1 cut(s)	88
PspN4I	GGNNCC	1 cut(s)	248
PspPI	GGNCC	2 cut(s)	247, 411
PspPPI	RGGWCCY	1 cut(s)	247
PsuI	RGATCY	1 cut(s)	385
PvuI	CGATCG	1 cut(s)	158
RsaI	GTAC	1 cut(s)	438
RsaNI	GTAC	1 cut(s)	437
RseI	CAYNNNNRTG	1 cut(s)	444
SaqAI	TTAA	3 cut(s)	161, 239, 543
SatI	GCNGC	3 cut(s)	288, 348, 393
Sau3AI	GATC	2 cut(s)	155, 385
Sau96I	GGNCC	2 cut(s)	247, 411
SchI	GAGTC	1 cut(s)	377
ScrFI	CCNGG	3 cut(s)	90, 443, 444
SduI	GDGCHC	1 cut(s)	451
SfaNI	GCATC	1 cut(s)	217
SfcI	CTRYAG	2 cut(s)	521, 690
SinI	GGWCC	1 cut(s)	247
SmaI	CCCGGG	1 cut(s)	444
SmiMI	CAYNNNNRTG	1 cut(s)	444
SnaBI	TACGTA	1 cut(s)	496
Sse9I	AATT	6 cut(s)	37, 107, 294, 352, 512, 587
SsiI	CCGC	2 cut(s)	244, 319
SspMI	CTAG	2 cut(s)	251, 483
StyD4I	CCNGG	3 cut(s)	88, 441, 442
TaaI	ACNGT	1 cut(s)	624
TaiI	ACGT	2 cut(s)	454, 498
TaqI	TCGA	3 cut(s)	26, 358, 642
TasI	AATT	6 cut(s)	37, 107, 294, 352, 512, 587
TatI	WGTACW	1 cut(s)	436
TfiI	GAWTC	1 cut(s)	188
Tru1I	TTAA	3 cut(s)	161, 239, 543
Tru9I	TTAA	3 cut(s)	161, 239, 543
TscAI	CASTG	1 cut(s)	178
TseI	GCWGC	3 cut(s)	287, 347, 392
TspDTI	ATGAA	3 cut(s)	438, 525, 665
TspMI	CCCGGG	1 cut(s)	442
TspRI	CASTG	1 cut(s)	178
VneI	GTGCAC	1 cut(s)	447
VpaK11BI	GGWCC	1 cut(s)	247
XapI	RAATTY	2 cut(s)	352, 512
XmaI	CCCGGG	1 cut(s)	442
XspI	CTAG	2 cut(s)	251, 483

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.