Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0009353

Physical Location & Seq

Genomic Coordinates Reverse (-)

17333527 .. 17334380

Gene Structure 854 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g14850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGCTTCATCATCCTTCTTCACTCTCTTCAAGGAAAAACAATTTAGTTGTGGCAAAGACTTTTGAAAAGGGGTACAAAGTTCCGTTCTTTCCTGGTTATCATCAGCTCAAATTGCGAACTGAAGAGTCCATATCCTCTGTTCAGGCCTCTCGATTGCGGTCACTAAGACCATGTAATGTGAAAGGCGAGGACTCAAGGGAAAGCTCAAGCAGCGGCGAACGCATCATATTGGATGCACAAACTTTAGAGCGTGATCTAGACATTGCCATTGCAGAGGAGAACTATGCCAAAGCAGCACAGATTCGTGACAGCCTCAAACTTCTGATGCAGGATAGTCTAACTTCTGTTAGAGCAGCAAATGCACAATTCTATGAGGCATTCAAGATTGGGGATTTAGCTGCCATGCAAGCCCTCTGGGCCCAAAGGAAAGAAGTCTGCTGCGTGCACCCGGGTGCACGTGGAATCTACGGTTATGAAGATGTTATGACTAGCTGGGACTACGTGTGGGCAAACTACGAATTTCCACTAGAGATTGAGCTGAAGGACGTTAATGTTTACGTTAGAGGGGATGTCGGGTATGTTTCTTGTGTGGAATTGGTTAAGACAAAGGGCAGCAGTTGGGGGGGACAGTTTGCAACAAATGTGTTTGAGAAGATTGATGGTAAATGGTTTATCTGTATTCACCATGCTTCAGTTCTTGACTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SnoaL_3 UVR

Protein Analysis

236

Amino Acids

26.52

Weight (kDa)

6.32

Isoelectric Point (pI)

32.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SnoaL_3	PF13474	116 - 233	4.1e-24	SnoaL-like domain
DUF4440	PF14534	116 - 223	3.2e-08	Domain of unknown function (DUF4440)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009353)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09250 AT3G09250 AT3G09250
fragaria_vesca	FvH4_6g12490 FvH4_6g12490
malus_domestica	MD04G1141800.v1.1 MD12G1156400.v1.1
prunus_persica	Prupe.6G267200_v2.0.a1 Prupe.6G267200_v2.0.a1 Prupe.6G267200_v2.0.a1 Prupe.6G267200_v2.0.a1
pyrus_communis	pycom12g14850
rosa_chinensis	RchiOBHm_Chr3g0464311
rosa_laevigata	RLG00000024709
rosa_multiflora	Rmu_co8475005.1_g000001 Rmu_sc0007811.1_g000002
rosa_roxburghii	Rroxscaffold_6G00415820
rosa_rugosa	Rorug03G0071300
rosa_samantha	Rh3BG133400 Rh3CG135700 Rh3DG134900
rosa_wichuraiana	Rw3G010930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	157, 213
AcsI	RAATTY	1 cut(s)	518
AcuI	CTGAAG	3 cut(s)	141, 560, 675
AcvI	CACGTG	1 cut(s)	458
AfaI	GTAC	1 cut(s)	74
AflIII	ACRYGT	1 cut(s)	501
AgsI	TTSAA	3 cut(s)	30, 65, 382
AjnI	CCWGG	1 cut(s)	91
AleI	CACNNNNGTG	1 cut(s)	450
AluBI	AGCT	5 cut(s)	106, 204, 398, 492, 538
AluI	AGCT	5 cut(s)	106, 204, 398, 492, 538
Alw21I	GWGCWC	2 cut(s)	447, 457
Alw44I	GTGCAC	2 cut(s)	443, 453
Ama87I	CYCGRG	1 cut(s)	448
AoxI	GGCC	2 cut(s)	144, 417
ApaI	GGGCCC	1 cut(s)	421
ApaLI	GTGCAC	2 cut(s)	443, 453
ApeKI	GCWGC	6 cut(s)	210, 293, 353, 398, 438, 612
ApoI	RAATTY	1 cut(s)	518
AspS9I	GGNCC	2 cut(s)	417, 418
AsuC2I	CCSGG	2 cut(s)	449, 450
AsuHPI	GGTGA	1 cut(s)	674
AvaI	CYCGRG	1 cut(s)	448
BaeGI	GKGCMC	3 cut(s)	421, 447, 457
BanII	GRGCYC	1 cut(s)	421
BbrPI	CACGTG	1 cut(s)	458
Bbv12I	GWGCWC	2 cut(s)	447, 457
BbvI	GCAGC	6 cut(s)	222, 305, 365, 385, 425, 624
BccI	CCATC	1 cut(s)	653
BciT130I	CCWGG	1 cut(s)	93
BcnI	CCSGG	2 cut(s)	449, 450
BfaI	CTAG	3 cut(s)	257, 489, 527
BglI	GCCNNNNNGGC	1 cut(s)	416
BisI	GCNGC	7 cut(s)	211, 214, 294, 354, 399, 439, 613
BlsI	GCNGC	7 cut(s)	212, 215, 295, 355, 400, 440, 614
Bme1390I	CCNGG	3 cut(s)	93, 449, 450
BmeT110I	CYCGRG	1 cut(s)	448
BmgT120I	GGNCC	2 cut(s)	417, 418
BmiI	GGNNCC	1 cut(s)	419
BmrFI	CCNGG	3 cut(s)	93, 449, 450
BmsI	GCATC	3 cut(s)	223, 231, 315
BpuEI	CTTGAG	2 cut(s)	178, 190
BpuMI	CCSGG	2 cut(s)	449, 450
BsaAI	YACGTR	2 cut(s)	458, 502
BsaJI	CCNNGG	1 cut(s)	448
Bse3DI	GCAATG	2 cut(s)	261, 267
BseBI	CCWGG	1 cut(s)	93
BseDI	CCNNGG	1 cut(s)	448
BseGI	GGATG	3 cut(s)	10, 238, 574
BseMI	GCAATG	2 cut(s)	261, 267
BseRI	GAGGAG	1 cut(s)	290
BseSI	GKGCMC	3 cut(s)	421, 447, 457
BseXI	GCAGC	6 cut(s)	222, 305, 365, 385, 425, 624
BseYI	CCCAGC	1 cut(s)	492
BshFI	GGCC	2 cut(s)	146, 419
BsiHKAI	GWGCWC	2 cut(s)	447, 457
BsiHKCI	CYCGRG	1 cut(s)	448
BsiSI	CCGG	1 cut(s)	449
BslFI	GGGAC	2 cut(s)	509, 639
BsmFI	GGGAC	2 cut(s)	509, 639
BsmI	GAATGC	1 cut(s)	377
BsnI	GGCC	2 cut(s)	146, 419
BsoBI	CYCGRG	1 cut(s)	448
Bsp120I	GGGCCC	1 cut(s)	417
Bsp1286I	GDGCHC	3 cut(s)	421, 447, 457
Bsp143I	GATC	1 cut(s)	253
BspACI	CCGC	2 cut(s)	157, 213
BspANI	GGCC	2 cut(s)	146, 419
BspLI	GGNNCC	1 cut(s)	419
BsrDI	GCAATG	2 cut(s)	261, 267
BssECI	CCNNGG	1 cut(s)	448
BssMI	GATC	1 cut(s)	253
Bst2UI	CCWGG	1 cut(s)	93
Bst4CI	ACNGT	2 cut(s)	470, 630
Bst6I	CTCTTC	2 cut(s)	31, 117
BstAPI	GCANNNNNTGC	1 cut(s)	359
BstBAI	YACGTR	2 cut(s)	458, 502
BstC8I	GCNNGC	2 cut(s)	408, 443
BstDEI	CTNAG	1 cut(s)	164
BstF5I	GGATG	3 cut(s)	10, 238, 574
BstKTI	GATC	1 cut(s)	256
BstMBI	GATC	1 cut(s)	253
BstMWI	GCNNNNNNNGC	7 cut(s)	112, 210, 219, 293, 359, 407, 416
BstNI	CCWGG	1 cut(s)	93
BstSCI	CCNGG	3 cut(s)	91, 447, 448
BstSLI	GKGCMC	3 cut(s)	421, 447, 457
BstV1I	GCAGC	6 cut(s)	222, 305, 365, 385, 425, 624
BsuRI	GGCC	2 cut(s)	146, 419
BtsCI	GGATG	3 cut(s)	10, 238, 574
Cac8I	GCNNGC	2 cut(s)	408, 443
Cfr13I	GGNCC	2 cut(s)	417, 418
Cfr9I	CCCGGG	1 cut(s)	448
Csp6I	GTAC	1 cut(s)	73
CviAII	CATG	3 cut(s)	171, 403, 686
CviJI	RGCY	9 cut(s)	106, 146, 204, 312, 398, 410, 419, 492, 538
CviKI_1	RGCY	9 cut(s)	106, 146, 204, 312, 398, 410, 419, 492, 538
CviQI	GTAC	1 cut(s)	73
DdeI	CTNAG	1 cut(s)	164
DpnI	GATC	1 cut(s)	255
DpnII	GATC	1 cut(s)	253
Eam1104I	CTCTTC	2 cut(s)	31, 117
EarI	CTCTTC	2 cut(s)	31, 117
Eco147I	AGGCCT	1 cut(s)	146
Eco24I	GRGCYC	1 cut(s)	421
Eco57I	CTGAAG	3 cut(s)	141, 560, 675
Eco72I	CACGTG	1 cut(s)	458
Eco88I	CYCGRG	1 cut(s)	448
EcoRII	CCWGG	1 cut(s)	91
EcoT38I	GRGCYC	1 cut(s)	421
FaeI	CATG	3 cut(s)	174, 406, 689
FaqI	GGGAC	2 cut(s)	509, 639
FatI	CATG	3 cut(s)	170, 402, 685
Fnu4HI	GCNGC	7 cut(s)	211, 214, 294, 354, 399, 439, 613
FokI	GGATG	2 cut(s)	245, 581
FriOI	GRGCYC	1 cut(s)	421
Fsp4HI	GCNGC	7 cut(s)	211, 214, 294, 354, 399, 439, 613
FspBI	CTAG	3 cut(s)	257, 489, 527
GluI	GCNGC	7 cut(s)	211, 214, 294, 354, 399, 439, 613
GsaI	CCCAGC	1 cut(s)	496
HaeIII	GGCC	2 cut(s)	146, 419
HapII	CCGG	1 cut(s)	449
Hin1II	CATG	3 cut(s)	174, 406, 689
HinfI	GANTC	4 cut(s)	125, 191, 301, 462
HpaII	CCGG	1 cut(s)	449
HphI	GGTGA	1 cut(s)	674
Hpy166II	GTNNAC	3 cut(s)	445, 455, 556
Hpy188I	TCNGA	1 cut(s)	324
Hpy188III	TCNNGA	5 cut(s)	150, 257, 305, 382, 698
Hpy8I	GTNNAC	3 cut(s)	445, 455, 556
HpyAV	CCTTC	2 cut(s)	24, 535
HpyCH4III	ACNGT	2 cut(s)	470, 630
HpyCH4IV	ACGT	4 cut(s)	457, 501, 546, 558
HpyCH4V	TGCA	8 cut(s)	236, 272, 328, 362, 406, 445, 455, 635
HpyF10VI	GCNNNNNNNGC	7 cut(s)	112, 210, 219, 293, 359, 407, 416
HpyF3I	CTNAG	1 cut(s)	164
HpySE526I	ACGT	4 cut(s)	457, 501, 546, 558
Hsp92II	CATG	3 cut(s)	174, 406, 689
Kzo9I	GATC	1 cut(s)	253
LpnPI	CCDG	7 cut(s)	78, 105, 128, 314, 400, 462, 478
Lsp1109I	GCAGC	6 cut(s)	222, 305, 365, 385, 425, 624
LweI	GCATC	3 cut(s)	223, 231, 315
MaeI	CTAG	3 cut(s)	257, 489, 527
MaeII	ACGT	4 cut(s)	457, 501, 546, 558
MaeIII	GTNAC	2 cut(s)	159, 305
MalI	GATC	1 cut(s)	255
MboI	GATC	1 cut(s)	253
MboII	GAAGA	5 cut(s)	9, 18, 134, 488, 664
MhlI	GDGCHC	3 cut(s)	421, 447, 457
MluCI	AATT	5 cut(s)	40, 110, 365, 518, 593
MlyI	GAGTC	2 cut(s)	134, 185
MnlI	CCTC	8 cut(s)	145, 157, 181, 268, 323, 367, 422, 557
MseI	TTAA	2 cut(s)	549, 600
MslI	CAYNNNNRTG	1 cut(s)	450
MspA1I	CMGCKG	1 cut(s)	213
MspI	CCGG	1 cut(s)	449
MspR9I	CCNGG	3 cut(s)	93, 449, 450
Mva1269I	GAATGC	1 cut(s)	377
MvaI	CCWGG	1 cut(s)	93
MwoI	GCNNNNNNNGC	7 cut(s)	112, 210, 219, 293, 359, 407, 416
NciI	CCSGG	2 cut(s)	449, 450
NdeII	GATC	1 cut(s)	253
NlaIII	CATG	3 cut(s)	174, 406, 689
NlaIV	GGNNCC	1 cut(s)	419
NmuCI	GTSAC	2 cut(s)	159, 305
OliI	CACNNNNGTG	1 cut(s)	450
PceI	AGGCCT	1 cut(s)	146
PctI	GAATGC	1 cut(s)	377
PfeI	GAWTC	2 cut(s)	301, 462
PkrI	GCNGC	7 cut(s)	212, 215, 295, 355, 400, 440, 614
PleI	GAGTC	2 cut(s)	133, 185
PmaCI	CACGTG	1 cut(s)	458
PmlI	CACGTG	1 cut(s)	458
PpsI	GAGTC	2 cut(s)	133, 185
Ppu21I	YACGTR	2 cut(s)	458, 502
Psp6I	CCWGG	1 cut(s)	91
PspCI	CACGTG	1 cut(s)	458
PspFI	CCCAGC	1 cut(s)	492
PspGI	CCWGG	1 cut(s)	91
PspN4I	GGNNCC	1 cut(s)	419
PspOMI	GGGCCC	1 cut(s)	417
PspPI	GGNCC	2 cut(s)	417, 418
RsaI	GTAC	1 cut(s)	74
RsaNI	GTAC	1 cut(s)	73
RseI	CAYNNNNRTG	1 cut(s)	450
SaqAI	TTAA	2 cut(s)	549, 600
SatI	GCNGC	7 cut(s)	211, 214, 294, 354, 399, 439, 613
Sau3AI	GATC	1 cut(s)	253
Sau96I	GGNCC	2 cut(s)	417, 418
SchI	GAGTC	2 cut(s)	134, 185
ScrFI	CCNGG	3 cut(s)	93, 449, 450
SduI	GDGCHC	3 cut(s)	421, 447, 457
SetI	ASST	9 cut(s)	108, 206, 400, 460, 494, 504, 540, 549, 561
SfaNI	GCATC	3 cut(s)	223, 231, 315
SmaI	CCCGGG	1 cut(s)	450
SmiMI	CAYNNNNRTG	1 cut(s)	450
SmlI	CTYRAG	2 cut(s)	193, 205
SmoI	CTYRAG	2 cut(s)	193, 205
Sse9I	AATT	5 cut(s)	40, 110, 365, 518, 593
SseBI	AGGCCT	1 cut(s)	146
SsiI	CCGC	2 cut(s)	157, 213
SspMI	CTAG	3 cut(s)	257, 489, 527
StuI	AGGCCT	1 cut(s)	146
StyD4I	CCNGG	3 cut(s)	91, 447, 448
TaaI	ACNGT	2 cut(s)	470, 630
TaiI	ACGT	4 cut(s)	460, 504, 549, 561
TaqI	TCGA	1 cut(s)	151
TasI	AATT	5 cut(s)	40, 110, 365, 518, 593
TauI	GCSGC	1 cut(s)	216
TfiI	GAWTC	2 cut(s)	301, 462
Tru1I	TTAA	2 cut(s)	549, 600
Tru9I	TTAA	2 cut(s)	549, 600
TseFI	GTSAC	2 cut(s)	159, 305
TseI	GCWGC	6 cut(s)	210, 293, 353, 398, 438, 612
Tsp45I	GTSAC	2 cut(s)	159, 305
TspDTI	ATGAA	1 cut(s)	489
TspGWI	ACGGA	1 cut(s)	72
TspMI	CCCGGG	1 cut(s)	448
VneI	GTGCAC	2 cut(s)	443, 453
XapI	RAATTY	1 cut(s)	518
XbaI	TCTAGA	1 cut(s)	256
XmaI	CCCGGG	1 cut(s)	448
XspI	CTAG	3 cut(s)	257, 489, 527

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.