Rroxscaffold_6G00415820

Domain of unknown function (DUF4440)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0009353
Physical Location & Seq
Reverse (-)
37966036 .. 37968042
2007 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00415820.1

Sequence Viewer

Length: 426 bp
ATGGCGCTTCATGGATCTAGTTTCTGCTTAAATGGAAATCTTTCTTTTAAGGAGTTTAACAGCTTGCCGTGTGCATGTTATAGTTCGGGGATGCTTCATCATTTGTCTTTACCATCGAGGAAATACAATTTAGTTGTAGCAAATACTCTTGAAAGAGGGCATAGATTTCAGTTTTTGCCTGGAGATGGTCGTCTCAAATTGCAAACTGAACAATCCACATCCTTTCTTCCCACCTCTGGTTTGCGATCGTTAAAACCATGCAGTGCGAAATGTGATGATTCAAAGGATAGCTCAGTTAGCGAAAATATCATATTGGATGCAGAAACCTTAACGCGGGATCTAGATATTGCCATTGCAGAGGAGAACTATGCTAAGGCAGCAGAAATTAGGGATAGACTAAGACTTCTGCGCGGGAGGATAGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SnoaL_3 UVR

Protein Analysis

141

Amino Acids

15.66

Weight (kDa)

8.32

Isoelectric Point (pI)

47.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UVR PF02151 108 - 137 4.1e-06 UvrB/uvrC motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 334, 411
AciI CCGC 2 cut(s) 334, 411
AclWI GGATC 2 cut(s) 22, 345
AfiI CCNNNNNNNGG 3 cut(s) 185, 236, 333
AgsI TTSAA 2 cut(s) 152, 282
AjnI CCWGG 1 cut(s) 178
AluBI AGCT 2 cut(s) 63, 291
AluI AGCT 2 cut(s) 63, 291
Alw26I GTCTC 1 cut(s) 197
AlwI GGATC 2 cut(s) 22, 345
ApeKI GCWGC 1 cut(s) 377
Asp700I GAANNNNTTC 1 cut(s) 40
AspLEI GCGC 2 cut(s) 7, 411
BbvI GCAGC 1 cut(s) 389
BccI CCATC 2 cut(s) 121, 179
BceAI ACGGC 1 cut(s) 52
BciT130I CCWGG 1 cut(s) 180
BcoDI GTCTC 1 cut(s) 197
BfaI CTAG 2 cut(s) 18, 341
BfoI RGCGCY 1 cut(s) 8
BisI GCNGC 1 cut(s) 378
BlsI GCNGC 1 cut(s) 379
Bme1390I CCNGG 1 cut(s) 180
BmrFI CCNGG 1 cut(s) 180
BmsI GCATC 2 cut(s) 81, 307
BpmI CTGGAG 1 cut(s) 201
Bpu10I CCTNAGC 1 cut(s) 372
Bsc4I CCNNNNNNNGG 3 cut(s) 185, 236, 333
Bse3DI GCAATG 1 cut(s) 351
BseBI CCWGG 1 cut(s) 180
BseGI GGATG 3 cut(s) 96, 218, 322
BseLI CCNNNNNNNGG 3 cut(s) 185, 236, 333
BseMI GCAATG 1 cut(s) 351
BseMII CTCAG 1 cut(s) 306
BseRI GAGGAG 1 cut(s) 374
BseXI GCAGC 1 cut(s) 389
Bsh1236I CGCG 2 cut(s) 334, 411
Bsh1285I CGRYCG 1 cut(s) 248
BsiEI CGRYCG 1 cut(s) 248
BslI CCNNNNNNNGG 3 cut(s) 185, 236, 333
BsmAI GTCTC 1 cut(s) 197
BsmBI CGTCTC 1 cut(s) 197
Bsp143I GATC 3 cut(s) 14, 245, 337
BspACI CCGC 2 cut(s) 334, 411
BspCNI CTCAG 1 cut(s) 305
BspFNI CGCG 2 cut(s) 334, 411
BspPI GGATC 2 cut(s) 22, 345
BsrDI GCAATG 1 cut(s) 351
BssMI GATC 3 cut(s) 14, 245, 337
Bst2UI CCWGG 1 cut(s) 180
BstC8I GCNNGC 1 cut(s) 65
BstDEI CTNAG 3 cut(s) 292, 372, 398
BstF5I GGATG 3 cut(s) 96, 218, 322
BstFNI CGCG 2 cut(s) 334, 411
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 2 cut(s) 7, 411
BstKTI GATC 3 cut(s) 17, 248, 340
BstMAI GTCTC 1 cut(s) 197
BstMBI GATC 3 cut(s) 14, 245, 337
BstMCI CGRYCG 1 cut(s) 248
BstMWI GCNNNNNNNGC 2 cut(s) 297, 377
BstNI CCWGG 1 cut(s) 180
BstNSI RCATGY 1 cut(s) 78
BstSCI CCNGG 1 cut(s) 178
BstUI CGCG 2 cut(s) 334, 411
BstV1I GCAGC 1 cut(s) 389
BstX2I RGATCY 2 cut(s) 14, 337
BstYI RGATCY 2 cut(s) 14, 337
BtsCI GGATG 3 cut(s) 96, 218, 322
BtsI GCAGTG 1 cut(s) 268
BtsIMutI CAGTG 1 cut(s) 268
Cac8I GCNNGC 1 cut(s) 65
CfoI GCGC 2 cut(s) 7, 411
CviAII CATG 3 cut(s) 11, 75, 258
CviJI RGCY 2 cut(s) 63, 291
CviKI_1 RGCY 2 cut(s) 63, 291
DdeI CTNAG 3 cut(s) 292, 372, 398
DpnI GATC 3 cut(s) 16, 247, 339
DpnII GATC 3 cut(s) 14, 245, 337
EcoRII CCWGG 1 cut(s) 178
Esp3I CGTCTC 1 cut(s) 197
FaeI CATG 3 cut(s) 14, 78, 261
FaiI YATR 8 cut(s) 12, 76, 81, 162, 259, 311, 369, 424
FatI CATG 3 cut(s) 10, 74, 257
FauI CCCGC 2 cut(s) 327, 404
Fnu4HI GCNGC 1 cut(s) 378
FokI GGATG 3 cut(s) 103, 205, 329
Fsp4HI GCNGC 1 cut(s) 378
FspBI CTAG 2 cut(s) 18, 341
GlaI GCGC 2 cut(s) 6, 410
GluI GCNGC 1 cut(s) 378
GsuI CTGGAG 1 cut(s) 201
HaeII RGCGCY 1 cut(s) 8
HhaI GCGC 2 cut(s) 7, 411
Hin1II CATG 3 cut(s) 14, 78, 261
Hin6I GCGC 2 cut(s) 5, 409
HinP1I GCGC 2 cut(s) 5, 409
HinfI GANTC 1 cut(s) 278
Hpy188III TCNNGA 2 cut(s) 149, 341
HpyCH4V TGCA 5 cut(s) 74, 202, 261, 320, 356
HpyF10VI GCNNNNNNNGC 2 cut(s) 297, 377
HpyF3I CTNAG 3 cut(s) 292, 372, 398
Hsp92II CATG 3 cut(s) 14, 78, 261
HspAI GCGC 2 cut(s) 5, 409
Kzo9I GATC 3 cut(s) 14, 245, 337
LpnPI CCDG 3 cut(s) 165, 192, 222
Lsp1109I GCAGC 1 cut(s) 389
LweI GCATC 2 cut(s) 81, 307
MaeI CTAG 2 cut(s) 18, 341
MalI GATC 3 cut(s) 16, 247, 339
MboI GATC 3 cut(s) 14, 245, 337
MboII GAAGA 1 cut(s) 218
MflI RGATCY 2 cut(s) 14, 337
MluCI AATT 3 cut(s) 127, 197, 384
MnlI CCTC 5 cut(s) 111, 149, 244, 352, 408
MroXI GAANNNNTTC 1 cut(s) 40
MseI TTAA 5 cut(s) 29, 48, 57, 251, 329
MspR9I CCNGG 1 cut(s) 180
MvaI CCWGG 1 cut(s) 180
MvnI CGCG 2 cut(s) 334, 411
MwoI GCNNNNNNNGC 2 cut(s) 297, 377
NdeII GATC 3 cut(s) 14, 245, 337
NlaIII CATG 3 cut(s) 14, 78, 261
NspI RCATGY 1 cut(s) 78
PdmI GAANNNNTTC 1 cut(s) 40
PfeI GAWTC 1 cut(s) 278
PkrI GCNGC 1 cut(s) 379
Ple19I CGATCG 1 cut(s) 248
Psp6I CCWGG 1 cut(s) 178
PspGI CCWGG 1 cut(s) 178
PsuI RGATCY 2 cut(s) 14, 337
PvuI CGATCG 1 cut(s) 248
SaqAI TTAA 5 cut(s) 29, 48, 57, 251, 329
SatI GCNGC 1 cut(s) 378
Sau3AI GATC 3 cut(s) 14, 245, 337
ScrFI CCNGG 1 cut(s) 180
SetI ASST 4 cut(s) 65, 236, 293, 329
SfaNI GCATC 2 cut(s) 81, 307
Sse9I AATT 3 cut(s) 127, 197, 384
SsiI CCGC 2 cut(s) 334, 411
SspMI CTAG 2 cut(s) 18, 341
StyD4I CCNGG 1 cut(s) 178
TaqI TCGA 1 cut(s) 116
TasI AATT 3 cut(s) 127, 197, 384
TfiI GAWTC 1 cut(s) 278
Tru1I TTAA 5 cut(s) 29, 48, 57, 251, 329
Tru9I TTAA 5 cut(s) 29, 48, 57, 251, 329
TscAI CASTG 1 cut(s) 268
TseI GCWGC 1 cut(s) 377
TspDTI ATGAA 1 cut(s) 86
TspRI CASTG 1 cut(s) 268
XbaI TCTAGA 1 cut(s) 340
XceI RCATGY 1 cut(s) 78
XmnI GAANNNNTTC 1 cut(s) 40
XspI CTAG 2 cut(s) 18, 341
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.