Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0009353

Physical Location & Seq

Genomic Coordinates Reverse (-)

23070082 .. 23071709

Gene Structure 1628 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1141800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGGCGCTTCATGGATCTGGTTTCTGCCTAAATGGAAATGTTTCTCGTGGAGAGCTTAATCGCTTGCCGTGTTCCTGTATTTATACTTTTGGGATGCTTCATCCTCCTTCTTCACCCTATTCAAGGAAAAACAACTTAGTTGTAGCAAAGACTGTCGAAAGGGGGCATAAAGTTCCGTTCTTTCCTGGTTATCGTCAGCTCAAATTGCGAACTGAAGAATCCATATCCTCTGTTCAGGCCTCTCGATTGCGGCCCCTAAGACCATGTAATGTGATAGGCGATGACTCAAAGGAAAGCTCAAGCGGTGGCGAAAGCATCGTATTGGATGCGCAAACCTTGGAGCGTGATCTAGACATTGCCATTGCAGAGGAGGACTATGCCAAAGCAGCACAAATTCGTGATAGCCTCAAACTTCTGATGCAGGACAGTCTAACTTCTGTTAGAACAGCAAACGCACAGTTCTACGAGGCATTCAGGATTGGGGATTTAGCTGCAATGCAAGCCCTTTGGGCCCAAAGGAAAGAAGTCTGCTGCGTGCACCCGGGTGCTCGTGGAATCTATGGTTACGAAGATGTTATGACTAGCTGGGACTACGTGTGGGCAAACTACGAATTTCCACTAGAGATTGAGCTGAAAGATGTTAATGTTTACGTTAGAGGGGATGTCGGGTATGTTTCTTGTGTCGAGTTGGTGAAGACAAAGGGTAGCAGTTGGGGTGGACAGTTTGCAACAAATGTGTTTGAGAAAATTGATGGTAAATGGTTTATCTGTATTCACCATGCTTCAGTTCTTGACTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SnoaL_3 UVR

Protein Analysis

267

Amino Acids

29.71

Weight (kDa)

6.09

Isoelectric Point (pI)

32.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SnoaL_3	PF13474	147 - 264	4.9e-24	SnoaL-like domain
DUF4440	PF14534	148 - 254	9.2e-08	Domain of unknown function (DUF4440)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009353)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09250 AT3G09250 AT3G09250
fragaria_vesca	FvH4_6g12490 FvH4_6g12490
malus_domestica	MD04G1141800.v1.1 MD12G1156400.v1.1
prunus_persica	Prupe.6G267200_v2.0.a1 Prupe.6G267200_v2.0.a1 Prupe.6G267200_v2.0.a1 Prupe.6G267200_v2.0.a1
pyrus_communis	pycom12g14850
rosa_chinensis	RchiOBHm_Chr3g0464311
rosa_laevigata	RLG00000024709
rosa_multiflora	Rmu_co8475005.1_g000001 Rmu_sc0007811.1_g000002
rosa_roxburghii	Rroxscaffold_6G00415820
rosa_rugosa	Rorug03G0071300
rosa_samantha	Rh3BG133400 Rh3CG135700 Rh3DG134900
rosa_wichuraiana	Rw3G010930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	330
AciI	CCGC	2 cut(s)	250, 303
AclWI	GGATC	1 cut(s)	22
AcsI	RAATTY	2 cut(s)	393, 611
AcuI	CTGAAG	2 cut(s)	234, 768
AfiI	CCNNNNNNNGG	1 cut(s)	123
AflIII	ACRYGT	1 cut(s)	594
AgsI	TTSAA	1 cut(s)	123
AjnI	CCWGG	1 cut(s)	184
AleI	CACNNNNGTG	1 cut(s)	543
AluBI	AGCT	6 cut(s)	55, 199, 297, 491, 585, 631
AluI	AGCT	6 cut(s)	55, 199, 297, 491, 585, 631
Alw21I	GWGCWC	2 cut(s)	540, 550
Alw44I	GTGCAC	1 cut(s)	536
AlwI	GGATC	1 cut(s)	22
Ama87I	CYCGRG	1 cut(s)	541
AoxI	GGCC	3 cut(s)	237, 251, 510
ApaI	GGGCCC	1 cut(s)	514
ApaLI	GTGCAC	1 cut(s)	536
ApeKI	GCWGC	3 cut(s)	386, 491, 531
ApoI	RAATTY	2 cut(s)	393, 611
Asp700I	GAANNNNTTC	1 cut(s)	40
AspLEI	GCGC	2 cut(s)	7, 331
AspS9I	GGNCC	3 cut(s)	252, 510, 511
AsuC2I	CCSGG	2 cut(s)	542, 543
AsuHPI	GGTGA	3 cut(s)	105, 703, 767
AvaI	CYCGRG	1 cut(s)	541
BaeGI	GKGCMC	2 cut(s)	514, 540
BanII	GRGCYC	1 cut(s)	514
BauI	CACGAG	2 cut(s)	45, 549
BbsI	GAAGAC	1 cut(s)	701
Bbv12I	GWGCWC	2 cut(s)	540, 550
BbvI	GCAGC	3 cut(s)	398, 478, 518
BccI	CCATC	1 cut(s)	746
BceAI	ACGGC	1 cut(s)	52
BciT130I	CCWGG	1 cut(s)	186
BcnI	CCSGG	2 cut(s)	542, 543
BfaI	CTAG	3 cut(s)	350, 582, 620
BfoI	RGCGCY	1 cut(s)	8
BglI	GCCNNNNNGGC	1 cut(s)	509
BisI	GCNGC	4 cut(s)	251, 387, 492, 532
BlsI	GCNGC	4 cut(s)	252, 388, 493, 533
Bme1390I	CCNGG	3 cut(s)	186, 542, 543
BmeT110I	CYCGRG	1 cut(s)	541
BmgT120I	GGNCC	3 cut(s)	252, 510, 511
BmiI	GGNNCC	2 cut(s)	254, 512
BmrFI	CCNGG	3 cut(s)	186, 542, 543
BmsI	GCATC	4 cut(s)	84, 316, 324, 408
BpiI	GAAGAC	1 cut(s)	701
BpuEI	CTTGAG	1 cut(s)	283
BpuMI	CCSGG	2 cut(s)	542, 543
BsaAI	YACGTR	1 cut(s)	595
BsaJI	CCNNGG	2 cut(s)	336, 541
Bsc4I	CCNNNNNNNGG	1 cut(s)	123
Bse3DI	GCAATG	3 cut(s)	354, 360, 501
BseBI	CCWGG	1 cut(s)	186
BseDI	CCNNGG	2 cut(s)	336, 541
BseGI	GGATG	4 cut(s)	99, 100, 331, 667
BseLI	CCNNNNNNNGG	1 cut(s)	123
BseMI	GCAATG	3 cut(s)	354, 360, 501
BseRI	GAGGAG	1 cut(s)	383
BseSI	GKGCMC	2 cut(s)	514, 540
BseXI	GCAGC	3 cut(s)	398, 478, 518
BseYI	CCCAGC	1 cut(s)	585
BshFI	GGCC	3 cut(s)	239, 253, 512
BsiHKAI	GWGCWC	2 cut(s)	540, 550
BsiHKCI	CYCGRG	1 cut(s)	541
BsiSI	CCGG	1 cut(s)	542
BslFI	GGGAC	1 cut(s)	602
BslI	CCNNNNNNNGG	1 cut(s)	123
BsmFI	GGGAC	1 cut(s)	602
BsmI	GAATGC	1 cut(s)	470
BsnI	GGCC	3 cut(s)	239, 253, 512
BsoBI	CYCGRG	1 cut(s)	541
Bsp120I	GGGCCC	1 cut(s)	510
Bsp1286I	GDGCHC	3 cut(s)	514, 540, 550
Bsp143I	GATC	2 cut(s)	14, 346
BspACI	CCGC	2 cut(s)	250, 303
BspANI	GGCC	3 cut(s)	239, 253, 512
BspLI	GGNNCC	2 cut(s)	254, 512
BspPI	GGATC	1 cut(s)	22
BsrDI	GCAATG	3 cut(s)	354, 360, 501
BssECI	CCNNGG	2 cut(s)	336, 541
BssMI	GATC	2 cut(s)	14, 346
BssSI	CACGAG	2 cut(s)	45, 549
BssT1I	CCWWGG	1 cut(s)	336
Bst2BI	CACGAG	2 cut(s)	45, 549
Bst2UI	CCWGG	1 cut(s)	186
Bst4CI	ACNGT	4 cut(s)	154, 428, 459, 723
BstBAI	YACGTR	1 cut(s)	595
BstC8I	GCNNGC	3 cut(s)	65, 501, 536
BstDEI	CTNAG	2 cut(s)	136, 257
BstENI	CCTNNNNNAGG	1 cut(s)	121
BstF5I	GGATG	4 cut(s)	99, 100, 331, 667
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	2 cut(s)	7, 331
BstKTI	GATC	2 cut(s)	17, 349
BstMBI	GATC	2 cut(s)	14, 346
BstMWI	GCNNNNNNNGC	4 cut(s)	205, 386, 500, 509
BstNI	CCWGG	1 cut(s)	186
BstSCI	CCNGG	3 cut(s)	184, 540, 541
BstSLI	GKGCMC	2 cut(s)	514, 540
BstV1I	GCAGC	3 cut(s)	398, 478, 518
BstV2I	GAAGAC	1 cut(s)	701
BstX2I	RGATCY	1 cut(s)	14
BstYI	RGATCY	1 cut(s)	14
BsuRI	GGCC	3 cut(s)	239, 253, 512
BtgZI	GCGATG	1 cut(s)	294
BtsCI	GGATG	4 cut(s)	99, 100, 331, 667
Cac8I	GCNNGC	3 cut(s)	65, 501, 536
CfoI	GCGC	2 cut(s)	7, 331
Cfr13I	GGNCC	3 cut(s)	252, 510, 511
Cfr9I	CCCGGG	1 cut(s)	541
CviAII	CATG	3 cut(s)	11, 264, 779
DdeI	CTNAG	2 cut(s)	136, 257
DpnI	GATC	2 cut(s)	16, 348
DpnII	GATC	2 cut(s)	14, 346
Eco130I	CCWWGG	1 cut(s)	336
Eco147I	AGGCCT	1 cut(s)	239
Eco24I	GRGCYC	1 cut(s)	514
Eco57I	CTGAAG	2 cut(s)	234, 768
Eco88I	CYCGRG	1 cut(s)	541
EcoNI	CCTNNNNNAGG	1 cut(s)	121
EcoRII	CCWGG	1 cut(s)	184
EcoT14I	CCWWGG	1 cut(s)	336
EcoT38I	GRGCYC	1 cut(s)	514
ErhI	CCWWGG	1 cut(s)	336
FaeI	CATG	3 cut(s)	14, 267, 782
FaqI	GGGAC	1 cut(s)	602
FatI	CATG	3 cut(s)	10, 263, 778
Fnu4HI	GCNGC	4 cut(s)	251, 387, 492, 532
FokI	GGATG	4 cut(s)	87, 106, 338, 674
FriOI	GRGCYC	1 cut(s)	514
Fsp4HI	GCNGC	4 cut(s)	251, 387, 492, 532
FspBI	CTAG	3 cut(s)	350, 582, 620
FspI	TGCGCA	1 cut(s)	330
GlaI	GCGC	2 cut(s)	6, 330
GluI	GCNGC	4 cut(s)	251, 387, 492, 532
GsaI	CCCAGC	1 cut(s)	589
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	3 cut(s)	239, 253, 512
HapII	CCGG	1 cut(s)	542
HhaI	GCGC	2 cut(s)	7, 331
Hin1II	CATG	3 cut(s)	14, 267, 782
Hin6I	GCGC	2 cut(s)	5, 329
HinP1I	GCGC	2 cut(s)	5, 329
HinfI	GANTC	3 cut(s)	218, 284, 555
HpaII	CCGG	1 cut(s)	542
HphI	GGTGA	3 cut(s)	105, 703, 767
Hpy166II	GTNNAC	3 cut(s)	538, 649, 719
Hpy188I	TCNGA	1 cut(s)	417
Hpy188III	TCNNGA	5 cut(s)	243, 350, 398, 475, 791
Hpy8I	GTNNAC	3 cut(s)	538, 649, 719
HpyAV	CCTTC	1 cut(s)	117
HpyCH4III	ACNGT	4 cut(s)	154, 428, 459, 723
HpyCH4IV	ACGT	2 cut(s)	594, 651
HpyCH4V	TGCA	6 cut(s)	365, 421, 494, 499, 538, 728
HpyF10VI	GCNNNNNNNGC	4 cut(s)	205, 386, 500, 509
HpyF3I	CTNAG	2 cut(s)	136, 257
HpySE526I	ACGT	2 cut(s)	594, 651
Hsp92II	CATG	3 cut(s)	14, 267, 782
HspAI	GCGC	2 cut(s)	5, 329
Kzo9I	GATC	2 cut(s)	14, 346
LmnI	GCTCC	1 cut(s)	340
LpnPI	CCDG	9 cut(s)	3, 88, 171, 198, 221, 407, 460, 555, 571
Lsp1109I	GCAGC	3 cut(s)	398, 478, 518
LweI	GCATC	4 cut(s)	84, 316, 324, 408
MaeI	CTAG	3 cut(s)	350, 582, 620
MaeII	ACGT	2 cut(s)	594, 651
MaeIII	GTNAC	1 cut(s)	563
MalI	GATC	2 cut(s)	16, 348
MboI	GATC	2 cut(s)	14, 346
MboII	GAAGA	4 cut(s)	102, 227, 581, 706
MflI	RGATCY	1 cut(s)	14
MhlI	GDGCHC	3 cut(s)	514, 540, 550
MluCI	AATT	4 cut(s)	203, 393, 611, 747
MlyI	GAGTC	1 cut(s)	278
MnlI	CCTC	8 cut(s)	114, 238, 250, 361, 364, 416, 460, 650
MroXI	GAANNNNTTC	1 cut(s)	40
MseI	TTAA	2 cut(s)	57, 642
MslI	CAYNNNNRTG	1 cut(s)	543
MspI	CCGG	1 cut(s)	542
MspR9I	CCNGG	3 cut(s)	186, 542, 543
Mva1269I	GAATGC	1 cut(s)	470
MvaI	CCWGG	1 cut(s)	186
MwoI	GCNNNNNNNGC	4 cut(s)	205, 386, 500, 509
NciI	CCSGG	2 cut(s)	542, 543
NdeII	GATC	2 cut(s)	14, 346
NlaIII	CATG	3 cut(s)	14, 267, 782
NlaIV	GGNNCC	2 cut(s)	254, 512
NsbI	TGCGCA	1 cut(s)	330
OliI	CACNNNNGTG	1 cut(s)	543
PceI	AGGCCT	1 cut(s)	239
PctI	GAATGC	1 cut(s)	470
PdmI	GAANNNNTTC	1 cut(s)	40
PfeI	GAWTC	2 cut(s)	218, 555
PkrI	GCNGC	4 cut(s)	252, 388, 493, 533
PleI	GAGTC	1 cut(s)	278
PpsI	GAGTC	1 cut(s)	278
Ppu21I	YACGTR	1 cut(s)	595
Psp6I	CCWGG	1 cut(s)	184
PspFI	CCCAGC	1 cut(s)	585
PspGI	CCWGG	1 cut(s)	184
PspN4I	GGNNCC	2 cut(s)	254, 512
PspOMI	GGGCCC	1 cut(s)	510
PspPI	GGNCC	3 cut(s)	252, 510, 511
PsuI	RGATCY	1 cut(s)	14
RseI	CAYNNNNRTG	1 cut(s)	543
SaqAI	TTAA	2 cut(s)	57, 642
SatI	GCNGC	4 cut(s)	251, 387, 492, 532
Sau3AI	GATC	2 cut(s)	14, 346
Sau96I	GGNCC	3 cut(s)	252, 510, 511
SchI	GAGTC	1 cut(s)	278
ScrFI	CCNGG	3 cut(s)	186, 542, 543
SduI	GDGCHC	3 cut(s)	514, 540, 550
SetI	ASST	9 cut(s)	57, 201, 299, 338, 493, 587, 597, 633, 654
SfaNI	GCATC	4 cut(s)	84, 316, 324, 408
SmaI	CCCGGG	1 cut(s)	543
SmiMI	CAYNNNNRTG	1 cut(s)	543
SmlI	CTYRAG	1 cut(s)	298
SmoI	CTYRAG	1 cut(s)	298
Sse9I	AATT	4 cut(s)	203, 393, 611, 747
SseBI	AGGCCT	1 cut(s)	239
SsiI	CCGC	2 cut(s)	250, 303
SspMI	CTAG	3 cut(s)	350, 582, 620
StuI	AGGCCT	1 cut(s)	239
StyD4I	CCNGG	3 cut(s)	184, 540, 541
StyI	CCWWGG	1 cut(s)	336
TaaI	ACNGT	4 cut(s)	154, 428, 459, 723
TaiI	ACGT	2 cut(s)	597, 654
TaqI	TCGA	3 cut(s)	156, 244, 684
TasI	AATT	4 cut(s)	203, 393, 611, 747
TauI	GCSGC	1 cut(s)	253
TfiI	GAWTC	2 cut(s)	218, 555
Tru1I	TTAA	2 cut(s)	57, 642
Tru9I	TTAA	2 cut(s)	57, 642
TseI	GCWGC	3 cut(s)	386, 491, 531
TspDTI	ATGAA	1 cut(s)	89
TspGWI	ACGGA	1 cut(s)	165
TspMI	CCCGGG	1 cut(s)	541
VneI	GTGCAC	1 cut(s)	536
XagI	CCTNNNNNAGG	1 cut(s)	121
XapI	RAATTY	2 cut(s)	393, 611
XbaI	TCTAGA	1 cut(s)	349
XmaI	CCCGGG	1 cut(s)	541
XmnI	GAANNNNTTC	1 cut(s)	40
XspI	CTAG	3 cut(s)	350, 582, 620

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.