Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0009353

Physical Location & Seq

Genomic Coordinates Reverse (-)

23699512 .. 23701097

Gene Structure 1586 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1156400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGGCGCTCCATGGATCTAGCTTCTGCGTAAATGGCAATGTTTCTCTTAGGGAGCTTAATCATCATCCTTCTTCACCCTCTTCAAGGAAAAACAATTTAGTTGTGGCAAAGACTTTGGGAAAGGGGCATAAAGTTCCGTTGTTTCCTGGTTATCTTCGGCTCAAATTGCGAACTGAAGAGTCCATATCCTCTGTTCAGGCCTCTCGATTGCGGTCACTAAGACCCTGTAATGTGAAAGGCGATGACTCAAAGGAAAGCTCAAGCAGCGGCGAAAGCGTCATATTGGATGCACAAACTTTAGAGCGTGATCTAGACATTGCCATTGCAGAAGAGAACTATGCCAAAGCAGCACAAATTCGTGACAGCCTCAAACTTCTGATGCAGGATAGTCTAACTTCTGTTAGAGCAGCAAATGCACAATTCTATGAGGCATTCAAGATTGGGGATTTAGCTGCCATGCAAGCCCTATGGGCCCAAAGGAAAGAAGTCTGTTGCGTGCACCCGGGTGCATGTGGGATCTACGGTTACGAAGATGTTATGACTAGCTGGGACTATGTGTGGGCAAACTACGAATTTCCACTAGAGATTGAGCTGAAAGACGTTAATGTTTACGTTAGAGCGGATGTCGGGTATGTTTCTTGTGTGGAATTGGTTAAGACAAAGGGCAGCAGTTGGGGGGGACAGTTTGCAACAAATGTGTTTGAGAAAATTGATGGTAAATGGTTTATCTGTATTCACCATGCTTCAGTTCTTGACTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SnoaL_3 UVR

Protein Analysis

254

Amino Acids

28.07

Weight (kDa)

6.39

Isoelectric Point (pI)

35.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SnoaL_3	PF13474	134 - 251	5.3e-23	SnoaL-like domain
DUF4440	PF14534	134 - 241	9.3e-07	Domain of unknown function (DUF4440)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009353)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09250 AT3G09250 AT3G09250
fragaria_vesca	FvH4_6g12490 FvH4_6g12490
malus_domestica	MD04G1141800.v1.1 MD12G1156400.v1.1
prunus_persica	Prupe.6G267200_v2.0.a1 Prupe.6G267200_v2.0.a1 Prupe.6G267200_v2.0.a1 Prupe.6G267200_v2.0.a1
pyrus_communis	pycom12g14850
rosa_chinensis	RchiOBHm_Chr3g0464311
rosa_laevigata	RLG00000024709
rosa_multiflora	Rmu_co8475005.1_g000001 Rmu_sc0007811.1_g000002
rosa_roxburghii	Rroxscaffold_6G00415820
rosa_rugosa	Rorug03G0071300
rosa_samantha	Rh3BG133400 Rh3CG135700 Rh3DG134900
rosa_wichuraiana	Rw3G010930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	620
AciI	CCGC	3 cut(s)	211, 267, 620
AclWI	GGATC	2 cut(s)	22, 524
AcsI	RAATTY	2 cut(s)	354, 572
AcuI	CTGAAG	2 cut(s)	195, 729
AfiI	CCNNNNNNNGG	1 cut(s)	84
AgsI	TTSAA	2 cut(s)	84, 436
AjnI	CCWGG	1 cut(s)	145
AleI	CACNNNNGTG	1 cut(s)	504
AluBI	AGCT	6 cut(s)	21, 55, 258, 452, 546, 592
AluI	AGCT	6 cut(s)	21, 55, 258, 452, 546, 592
Alw21I	GWGCWC	1 cut(s)	501
Alw44I	GTGCAC	1 cut(s)	497
AlwI	GGATC	2 cut(s)	22, 524
Ama87I	CYCGRG	1 cut(s)	502
AoxI	GGCC	2 cut(s)	198, 471
ApaI	GGGCCC	1 cut(s)	475
ApaLI	GTGCAC	1 cut(s)	497
ApeKI	GCWGC	5 cut(s)	264, 347, 407, 452, 666
ApoI	RAATTY	2 cut(s)	354, 572
AspLEI	GCGC	1 cut(s)	7
AspS9I	GGNCC	2 cut(s)	471, 472
AsuC2I	CCSGG	2 cut(s)	503, 504
AsuHPI	GGTGA	2 cut(s)	66, 728
AvaI	CYCGRG	1 cut(s)	502
BaeGI	GKGCMC	2 cut(s)	475, 501
BanII	GRGCYC	1 cut(s)	475
Bbv12I	GWGCWC	1 cut(s)	501
BbvI	GCAGC	5 cut(s)	276, 359, 419, 439, 678
BccI	CCATC	1 cut(s)	707
BciT130I	CCWGG	1 cut(s)	147
BcnI	CCSGG	2 cut(s)	503, 504
BfaI	CTAG	4 cut(s)	18, 311, 543, 581
BfoI	RGCGCY	1 cut(s)	8
BglI	GCCNNNNNGGC	1 cut(s)	470
BisI	GCNGC	6 cut(s)	265, 268, 348, 408, 453, 667
BlsI	GCNGC	6 cut(s)	266, 269, 349, 409, 454, 668
Bme1390I	CCNGG	3 cut(s)	147, 503, 504
BmeT110I	CYCGRG	1 cut(s)	502
BmgT120I	GGNCC	2 cut(s)	471, 472
BmiI	GGNNCC	1 cut(s)	473
BmrFI	CCNGG	3 cut(s)	147, 503, 504
BmsI	GCATC	2 cut(s)	277, 369
BpuEI	CTTGAG	1 cut(s)	244
BpuMI	CCSGG	2 cut(s)	503, 504
BsaJI	CCNNGG	2 cut(s)	10, 502
Bsc4I	CCNNNNNNNGG	1 cut(s)	84
Bse3DI	GCAATG	3 cut(s)	43, 315, 321
BseBI	CCWGG	1 cut(s)	147
BseDI	CCNNGG	2 cut(s)	10, 502
BseGI	GGATG	3 cut(s)	64, 292, 628
BseLI	CCNNNNNNNGG	1 cut(s)	84
BseMI	GCAATG	3 cut(s)	43, 315, 321
BseSI	GKGCMC	2 cut(s)	475, 501
BseXI	GCAGC	5 cut(s)	276, 359, 419, 439, 678
BseYI	CCCAGC	1 cut(s)	546
BshFI	GGCC	2 cut(s)	200, 473
BsiHKAI	GWGCWC	1 cut(s)	501
BsiHKCI	CYCGRG	1 cut(s)	502
BsiSI	CCGG	1 cut(s)	503
BslFI	GGGAC	2 cut(s)	563, 693
BslI	CCNNNNNNNGG	1 cut(s)	84
BsmFI	GGGAC	2 cut(s)	563, 693
BsmI	GAATGC	1 cut(s)	431
BsnI	GGCC	2 cut(s)	200, 473
BsoBI	CYCGRG	1 cut(s)	502
Bsp120I	GGGCCC	1 cut(s)	471
Bsp1286I	GDGCHC	2 cut(s)	475, 501
Bsp143I	GATC	3 cut(s)	14, 307, 516
Bsp19I	CCATGG	1 cut(s)	10
BspACI	CCGC	3 cut(s)	211, 267, 620
BspANI	GGCC	2 cut(s)	200, 473
BspLI	GGNNCC	1 cut(s)	473
BspPI	GGATC	2 cut(s)	22, 524
BsrBI	CCGCTC	1 cut(s)	620
BsrDI	GCAATG	3 cut(s)	43, 315, 321
BssECI	CCNNGG	2 cut(s)	10, 502
BssMI	GATC	3 cut(s)	14, 307, 516
BssT1I	CCWWGG	1 cut(s)	10
Bst2UI	CCWGG	1 cut(s)	147
Bst4CI	ACNGT	2 cut(s)	524, 684
Bst6I	CTCTTC	3 cut(s)	85, 171, 324
BstAPI	GCANNNNNTGC	1 cut(s)	413
BstC8I	GCNNGC	2 cut(s)	462, 497
BstDEI	CTNAG	2 cut(s)	47, 218
BstDSI	CCRYGG	1 cut(s)	10
BstENI	CCTNNNNNAGG	1 cut(s)	82
BstF5I	GGATG	3 cut(s)	64, 292, 628
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	1 cut(s)	7
BstKTI	GATC	3 cut(s)	17, 310, 519
BstMBI	GATC	3 cut(s)	14, 307, 516
BstMWI	GCNNNNNNNGC	8 cut(s)	33, 166, 264, 273, 347, 413, 461, 470
BstNI	CCWGG	1 cut(s)	147
BstNSI	RCATGY	1 cut(s)	513
BstSCI	CCNGG	3 cut(s)	145, 501, 502
BstSLI	GKGCMC	2 cut(s)	475, 501
BstV1I	GCAGC	5 cut(s)	276, 359, 419, 439, 678
BstX2I	RGATCY	2 cut(s)	14, 516
BstYI	RGATCY	2 cut(s)	14, 516
BsuRI	GGCC	2 cut(s)	200, 473
BtgI	CCRYGG	1 cut(s)	10
BtgZI	GCGATG	1 cut(s)	255
BtsCI	GGATG	3 cut(s)	64, 292, 628
Cac8I	GCNNGC	2 cut(s)	462, 497
CfoI	GCGC	1 cut(s)	7
Cfr13I	GGNCC	2 cut(s)	471, 472
Cfr9I	CCCGGG	1 cut(s)	502
CseI	GACGC	1 cut(s)	265
CviAII	CATG	4 cut(s)	11, 457, 510, 740
DdeI	CTNAG	2 cut(s)	47, 218
DpnI	GATC	3 cut(s)	16, 309, 518
DpnII	GATC	3 cut(s)	14, 307, 516
Eam1104I	CTCTTC	3 cut(s)	85, 171, 324
EarI	CTCTTC	3 cut(s)	85, 171, 324
Eco130I	CCWWGG	1 cut(s)	10
Eco147I	AGGCCT	1 cut(s)	200
Eco24I	GRGCYC	1 cut(s)	475
Eco57I	CTGAAG	2 cut(s)	195, 729
Eco88I	CYCGRG	1 cut(s)	502
EcoNI	CCTNNNNNAGG	1 cut(s)	82
EcoRII	CCWGG	1 cut(s)	145
EcoT14I	CCWWGG	1 cut(s)	10
EcoT38I	GRGCYC	1 cut(s)	475
ErhI	CCWWGG	1 cut(s)	10
FaeI	CATG	4 cut(s)	14, 460, 513, 743
FaqI	GGGAC	2 cut(s)	563, 693
FatI	CATG	4 cut(s)	10, 456, 509, 739
Fnu4HI	GCNGC	6 cut(s)	265, 268, 348, 408, 453, 667
FokI	GGATG	3 cut(s)	51, 299, 635
FriOI	GRGCYC	1 cut(s)	475
Fsp4HI	GCNGC	6 cut(s)	265, 268, 348, 408, 453, 667
FspBI	CTAG	4 cut(s)	18, 311, 543, 581
GlaI	GCGC	1 cut(s)	6
GluI	GCNGC	6 cut(s)	265, 268, 348, 408, 453, 667
GsaI	CCCAGC	1 cut(s)	550
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	2 cut(s)	200, 473
HapII	CCGG	1 cut(s)	503
HgaI	GACGC	1 cut(s)	265
HhaI	GCGC	1 cut(s)	7
Hin1II	CATG	4 cut(s)	14, 460, 513, 743
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HinfI	GANTC	2 cut(s)	179, 245
HpaII	CCGG	1 cut(s)	503
HphI	GGTGA	2 cut(s)	66, 728
Hpy166II	GTNNAC	2 cut(s)	499, 610
Hpy188I	TCNGA	1 cut(s)	378
Hpy188III	TCNNGA	5 cut(s)	204, 311, 359, 436, 752
Hpy8I	GTNNAC	2 cut(s)	499, 610
HpyAV	CCTTC	1 cut(s)	78
HpyCH4III	ACNGT	2 cut(s)	524, 684
HpyCH4IV	ACGT	2 cut(s)	600, 612
HpyCH4V	TGCA	8 cut(s)	290, 326, 382, 416, 460, 499, 509, 689
HpyF10VI	GCNNNNNNNGC	8 cut(s)	33, 166, 264, 273, 347, 413, 461, 470
HpyF3I	CTNAG	2 cut(s)	47, 218
HpySE526I	ACGT	2 cut(s)	600, 612
Hsp92II	CATG	4 cut(s)	14, 460, 513, 743
HspAI	GCGC	1 cut(s)	5
Kzo9I	GATC	3 cut(s)	14, 307, 516
LmnI	GCTCC	2 cut(s)	12, 52
LpnPI	CCDG	7 cut(s)	132, 159, 182, 238, 368, 516, 532
Lsp1109I	GCAGC	5 cut(s)	276, 359, 419, 439, 678
LweI	GCATC	2 cut(s)	277, 369
MaeI	CTAG	4 cut(s)	18, 311, 543, 581
MaeII	ACGT	2 cut(s)	600, 612
MaeIII	GTNAC	3 cut(s)	213, 359, 524
MalI	GATC	3 cut(s)	16, 309, 518
MbiI	CCGCTC	1 cut(s)	620
MboI	GATC	3 cut(s)	14, 307, 516
MboII	GAAGA	6 cut(s)	63, 72, 146, 188, 341, 542
MflI	RGATCY	2 cut(s)	14, 516
MhlI	GDGCHC	2 cut(s)	475, 501
MluCI	AATT	7 cut(s)	94, 164, 354, 419, 572, 647, 708
MlyI	GAGTC	2 cut(s)	188, 239
MnlI	CCTC	5 cut(s)	88, 199, 211, 377, 421
MseI	TTAA	3 cut(s)	57, 603, 654
MslI	CAYNNNNRTG	1 cut(s)	504
MspA1I	CMGCKG	1 cut(s)	267
MspI	CCGG	1 cut(s)	503
MspR9I	CCNGG	3 cut(s)	147, 503, 504
Mva1269I	GAATGC	1 cut(s)	431
MvaI	CCWGG	1 cut(s)	147
MwoI	GCNNNNNNNGC	8 cut(s)	33, 166, 264, 273, 347, 413, 461, 470
NciI	CCSGG	2 cut(s)	503, 504
NcoI	CCATGG	1 cut(s)	10
NdeII	GATC	3 cut(s)	14, 307, 516
NlaIII	CATG	4 cut(s)	14, 460, 513, 743
NlaIV	GGNNCC	1 cut(s)	473
NmuCI	GTSAC	2 cut(s)	213, 359
NspI	RCATGY	1 cut(s)	513
OliI	CACNNNNGTG	1 cut(s)	504
PceI	AGGCCT	1 cut(s)	200
PctI	GAATGC	1 cut(s)	431
PkrI	GCNGC	6 cut(s)	266, 269, 349, 409, 454, 668
PleI	GAGTC	2 cut(s)	187, 239
PpsI	GAGTC	2 cut(s)	187, 239
Psp6I	CCWGG	1 cut(s)	145
PspFI	CCCAGC	1 cut(s)	546
PspGI	CCWGG	1 cut(s)	145
PspN4I	GGNNCC	1 cut(s)	473
PspOMI	GGGCCC	1 cut(s)	471
PspPI	GGNCC	2 cut(s)	471, 472
PsuI	RGATCY	2 cut(s)	14, 516
RseI	CAYNNNNRTG	1 cut(s)	504
SaqAI	TTAA	3 cut(s)	57, 603, 654
SatI	GCNGC	6 cut(s)	265, 268, 348, 408, 453, 667
Sau3AI	GATC	3 cut(s)	14, 307, 516
Sau96I	GGNCC	2 cut(s)	471, 472
SchI	GAGTC	2 cut(s)	188, 239
ScrFI	CCNGG	3 cut(s)	147, 503, 504
SduI	GDGCHC	2 cut(s)	475, 501
SetI	ASST	8 cut(s)	23, 57, 260, 454, 548, 594, 603, 615
SfaNI	GCATC	2 cut(s)	277, 369
SmaI	CCCGGG	1 cut(s)	504
SmiMI	CAYNNNNRTG	1 cut(s)	504
SmlI	CTYRAG	1 cut(s)	259
SmoI	CTYRAG	1 cut(s)	259
Sse9I	AATT	7 cut(s)	94, 164, 354, 419, 572, 647, 708
SseBI	AGGCCT	1 cut(s)	200
SsiI	CCGC	3 cut(s)	211, 267, 620
SspMI	CTAG	4 cut(s)	18, 311, 543, 581
StuI	AGGCCT	1 cut(s)	200
StyD4I	CCNGG	3 cut(s)	145, 501, 502
StyI	CCWWGG	1 cut(s)	10
TaaI	ACNGT	2 cut(s)	524, 684
TaiI	ACGT	2 cut(s)	603, 615
TaqI	TCGA	1 cut(s)	205
TasI	AATT	7 cut(s)	94, 164, 354, 419, 572, 647, 708
TauI	GCSGC	1 cut(s)	270
Tru1I	TTAA	3 cut(s)	57, 603, 654
Tru9I	TTAA	3 cut(s)	57, 603, 654
TseFI	GTSAC	2 cut(s)	213, 359
TseI	GCWGC	5 cut(s)	264, 347, 407, 452, 666
Tsp45I	GTSAC	2 cut(s)	213, 359
TspGWI	ACGGA	1 cut(s)	126
TspMI	CCCGGG	1 cut(s)	502
VneI	GTGCAC	1 cut(s)	497
XagI	CCTNNNNNAGG	1 cut(s)	82
XapI	RAATTY	2 cut(s)	354, 572
XbaI	TCTAGA	1 cut(s)	310
XceI	RCATGY	1 cut(s)	513
XmaI	CCCGGG	1 cut(s)	502
XspI	CTAG	4 cut(s)	18, 311, 543, 581

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.