AT3G09430

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0007210
Physical Location & Seq
Forward (+)
2901199 .. 2903217
2019 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G09430.1

Sequence Viewer

Length: 906 bp
ATGGCGTCGTCATCGTCACGATCTCTGGTTTCTTCCTACACCTTTGATGAGAAAGACCTAGACGACGCTGATTTATGGGCGGTGATTGATTCCGCCGCCGCTGCAGCTACTATCGCCGGCAAATCTCCGAAACCCCTTGCTATTAGGTATCCAAATTACAATTCTCCTCCGACGCCTGTTTCGTATCCTTCTCCACAGTCGAAAATTCTTCAGATCCCCAATCGTAACCCTAATCTTGGCCGAGGATTGAACGAGGAGTCTAATCGTCCGAGCAAAATGGCCAGATCTCGCATCTTGTCTGAGGTGAAGAGTGAGACTCCGATGGCTCTTGTTACGACGGCGCACCGGAATTCGACCCCGAATATCATCAATTCGACGAAGTTTTCTTCGCCGGAGAGTTACTTGTCGCCTGGGATTAGACAGCCTACGCCTTTTGCGGAGGTTTCTCCGTCAGCGAGCTGTGTTAAGAACGATCCGATTAATGAGATGCGACATAGCTTGTCCGGTAGCTTTCCTTCTGCTACTCTGTTCAAGGAGTACCAGAATACAGCAATGGCGATTCTAGAGAAATCTGATTACACGATGATATCAGGGAAGGCATACATCAAAAAGTCAGGTTGGAGGAAAATATCGTTTTACTTCAATGTGTCTTATGAAATAAGAGACAAGACTATTGAATTCGACGAAAACAGAAATGTCCAGCGTGCTGAGTTCATCGTTCGAGCCATTATGCATGGAGGAAGATTCGCTGACGGATGGGGTTCTTGTGAGCGACGTGAGAAGAAATTTCTTAAACCGAATCACGATATCCCTAGCACAGCGGAGACCAGAGCCAAAAACAGGGCTTGTCAGGATCTTCTTGGAATCGGTGAATATCGAGAAAGCCCAGCTGGGCTTCCACGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

301

Amino Acids

33.48

Weight (kDa)

9.38

Isoelectric Point (pI)

58.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 6 cut(s) 80, 93, 96, 99, 437, 821
AclWI GGATC 3 cut(s) 208, 467, 861
AcoI YGGCCR 2 cut(s) 238, 279
AcsI RAATTY 4 cut(s) 204, 349, 677, 785
AcuI CTGAAG 1 cut(s) 194
AcyI GRCGYC 2 cut(s) 5, 173
AfaI GTAC 1 cut(s) 539
AfiI CCNNNNNNNGG 2 cut(s) 236, 840
AgsI TTSAA 4 cut(s) 250, 532, 643, 677
AjiI CACGTC 1 cut(s) 776
AjnI CCWGG 1 cut(s) 409
AjuI GAANNNNNNNTTGG 2 cut(s) 145, 177
AluBI AGCT 5 cut(s) 107, 459, 498, 510, 890
AluI AGCT 5 cut(s) 107, 459, 498, 510, 890
Alw26I GTCTC 3 cut(s) 308, 657, 818
AlwI GGATC 3 cut(s) 208, 467, 861
AoxI GGCC 2 cut(s) 238, 279
ApeKI GCWGC 2 cut(s) 101, 104
ApoI RAATTY 4 cut(s) 204, 349, 677, 785
ArsI GACNNNNNNTTYG 2 cut(s) 163, 195
AseI ATTAAT 1 cut(s) 480
AspLEI GCGC 1 cut(s) 343
AsuHPI GGTGA 3 cut(s) 94, 316, 881
BalI TGGCCA 1 cut(s) 281
BarI GAAGNNNNNNTAC 2 cut(s) 499, 531
BbvI GCAGC 2 cut(s) 88, 116
BccI CCATC 2 cut(s) 316, 750
BceAI ACGGC 1 cut(s) 354
BciT130I CCWGG 1 cut(s) 411
BciVI GTATCC 2 cut(s) 159, 195
BcoDI GTCTC 3 cut(s) 308, 657, 818
BfaI CTAG 3 cut(s) 59, 563, 813
BfmI CTRYAG 1 cut(s) 102
BfuI GTATCC 2 cut(s) 159, 195
BglII AGATCT 1 cut(s) 284
BisI GCNGC 4 cut(s) 96, 99, 102, 105
BlsI GCNGC 4 cut(s) 97, 100, 103, 106
Bme1390I CCNGG 1 cut(s) 411
BmgBI CACGTC 1 cut(s) 776
BmrFI CCNGG 1 cut(s) 411
BmsI GCATC 2 cut(s) 300, 477
BplI GAGNNNNNCTC 2 cut(s) 301, 333
BsaHI GRCGYC 2 cut(s) 5, 173
BsaI GGTCTC 1 cut(s) 818
BsaJI CCNNGG 2 cut(s) 241, 410
BsaWI WCCGGW 2 cut(s) 345, 503
Bsc4I CCNNNNNNNGG 2 cut(s) 236, 840
Bse118I RCCGGY 1 cut(s) 116
Bse3DI GCAATG 1 cut(s) 558
BseBI CCWGG 1 cut(s) 411
BseDI CCNNGG 2 cut(s) 241, 410
BseGI GGATG 1 cut(s) 761
BseLI CCNNNNNNNGG 2 cut(s) 236, 840
BseMI GCAATG 1 cut(s) 558
BseMII CTCAG 2 cut(s) 291, 699
BseRI GAGGAG 2 cut(s) 156, 269
BseXI GCAGC 2 cut(s) 88, 116
BseYI CCCAGC 2 cut(s) 886, 890
BshFI GGCC 2 cut(s) 240, 281
BsiSI CCGG 4 cut(s) 117, 346, 392, 504
BslI CCNNNNNNNGG 2 cut(s) 236, 840
BsmAI GTCTC 3 cut(s) 308, 657, 818
BsnI GGCC 2 cut(s) 240, 281
Bso31I GGTCTC 1 cut(s) 818
Bsp143I GATC 5 cut(s) 20, 213, 284, 472, 853
BspACI CCGC 6 cut(s) 80, 93, 96, 99, 437, 821
BspANI GGCC 2 cut(s) 240, 281
BspCNI CTCAG 2 cut(s) 292, 700
BspMAI CTGCAG 1 cut(s) 106
BspPI GGATC 3 cut(s) 208, 467, 861
BspTNI GGTCTC 1 cut(s) 818
BsrDI GCAATG 1 cut(s) 558
BsrFI RCCGGY 1 cut(s) 116
BssAI RCCGGY 1 cut(s) 116
BssECI CCNNGG 2 cut(s) 241, 410
BssMI GATC 5 cut(s) 20, 213, 284, 472, 853
BssNI GRCGYC 2 cut(s) 5, 173
Bst2UI CCWGG 1 cut(s) 411
Bst4CI ACNGT 1 cut(s) 198
Bst6I CTCTTC 1 cut(s) 302
BstACI GRCGYC 2 cut(s) 5, 173
BstC8I GCNNGC 3 cut(s) 118, 457, 705
BstDEI CTNAG 2 cut(s) 300, 708
BstF5I GGATG 1 cut(s) 761
BstHHI GCGC 1 cut(s) 343
BstKTI GATC 5 cut(s) 23, 216, 287, 475, 856
BstMAI GTCTC 3 cut(s) 308, 657, 818
BstMBI GATC 5 cut(s) 20, 213, 284, 472, 853
BstMWI GCNNNNNNNGC 3 cut(s) 101, 104, 113
BstNI CCWGG 1 cut(s) 411
BstSCI CCNGG 1 cut(s) 409
BstSFI CTRYAG 1 cut(s) 102
BstV1I GCAGC 2 cut(s) 88, 116
BstX2I RGATCY 3 cut(s) 213, 284, 853
BstYI RGATCY 3 cut(s) 213, 284, 853
BsuI GTATCC 2 cut(s) 159, 195
BsuRI GGCC 2 cut(s) 240, 281
BtrI CACGTC 1 cut(s) 776
BtsCI GGATG 1 cut(s) 761
Cac8I GCNNGC 3 cut(s) 118, 457, 705
CfoI GCGC 1 cut(s) 343
Cfr10I RCCGGY 1 cut(s) 116
CseI GACGC 2 cut(s) 74, 181
Csp6I GTAC 1 cut(s) 538
CviAII CATG 1 cut(s) 734
CviQI GTAC 1 cut(s) 538
DdeI CTNAG 2 cut(s) 300, 708
DpnI GATC 5 cut(s) 22, 215, 286, 474, 855
DpnII GATC 5 cut(s) 20, 213, 284, 472, 853
EaeI YGGCCR 2 cut(s) 238, 279
Eam1104I CTCTTC 1 cut(s) 302
EarI CTCTTC 1 cut(s) 302
EciI GGCGGA 1 cut(s) 82
Eco31I GGTCTC 1 cut(s) 818
Eco32I GATATC 2 cut(s) 588, 808
Eco57I CTGAAG 1 cut(s) 194
EcoRI GAATTC 2 cut(s) 349, 677
EcoRII CCWGG 1 cut(s) 409
EcoRV GATATC 2 cut(s) 588, 808
EcoT22I ATGCAT 1 cut(s) 735
FaeI CATG 1 cut(s) 737
FaiI YATR 6 cut(s) 76, 495, 601, 654, 731, 735
FatI CATG 1 cut(s) 733
Fnu4HI GCNGC 4 cut(s) 96, 99, 102, 105
FokI GGATG 1 cut(s) 768
Fsp4HI GCNGC 4 cut(s) 96, 99, 102, 105
FspBI CTAG 3 cut(s) 59, 563, 813
GlaI GCGC 1 cut(s) 342
GluI GCNGC 4 cut(s) 96, 99, 102, 105
GsaI CCCAGC 2 cut(s) 890, 894
HaeIII GGCC 2 cut(s) 240, 281
HapII CCGG 4 cut(s) 117, 346, 392, 504
HgaI GACGC 2 cut(s) 74, 181
HhaI GCGC 1 cut(s) 343
Hin1I GRCGYC 2 cut(s) 5, 173
Hin1II CATG 1 cut(s) 737
Hin6I GCGC 1 cut(s) 341
HinP1I GCGC 1 cut(s) 341
HinfI GANTC 7 cut(s) 89, 257, 316, 559, 744, 799, 864
HpaII CCGG 4 cut(s) 117, 346, 392, 504
HphI GGTGA 3 cut(s) 94, 316, 881
Hpy188I TCNGA 8 cut(s) 129, 171, 213, 270, 301, 321, 477, 574
Hpy188III TCNNGA 5 cut(s) 18, 563, 803, 851, 878
Hpy99I CGWCG 7 cut(s) 10, 68, 175, 340, 379, 686, 777
HpyAV CCTTC 3 cut(s) 198, 525, 589
HpyCH4III ACNGT 1 cut(s) 198
HpyCH4IV ACGT 1 cut(s) 775
HpyCH4V TGCA 2 cut(s) 104, 733
HpyF10VI GCNNNNNNNGC 3 cut(s) 101, 104, 113
HpyF3I CTNAG 2 cut(s) 300, 708
HpySE526I ACGT 1 cut(s) 775
Hsp92I GRCGYC 2 cut(s) 5, 173
Hsp92II CATG 1 cut(s) 737
HspAI GCGC 1 cut(s) 341
KroI GCCGGC 1 cut(s) 116
KroNI GCCGGC 1 cut(s) 118
Kzo9I GATC 5 cut(s) 20, 213, 284, 472, 853
Lsp1109I GCAGC 2 cut(s) 88, 116
LweI GCATC 2 cut(s) 300, 477
MaeI CTAG 3 cut(s) 59, 563, 813
MaeII ACGT 1 cut(s) 775
MaeIII GTNAC 4 cut(s) 15, 224, 331, 398
MalI GATC 5 cut(s) 22, 215, 286, 474, 855
MboI GATC 5 cut(s) 20, 213, 284, 472, 853
MboII GAAGA 7 cut(s) 24, 200, 319, 378, 753, 793, 848
MflI RGATCY 3 cut(s) 213, 284, 853
MlsI TGGCCA 1 cut(s) 281
MluCI AATT 7 cut(s) 154, 160, 204, 349, 370, 677, 785
MluNI TGGCCA 1 cut(s) 281
MlyI GAGTC 2 cut(s) 266, 310
MmeI TCCRAC 2 cut(s) 194, 599
MnlI CCTC 7 cut(s) 177, 236, 247, 295, 433, 615, 731
Mox20I TGGCCA 1 cut(s) 281
Mph1103I ATGCAT 1 cut(s) 735
MroNI GCCGGC 1 cut(s) 116
MscI TGGCCA 1 cut(s) 281
MseI TTAA 3 cut(s) 465, 480, 792
Msp20I TGGCCA 1 cut(s) 281
MspA1I CMGCKG 3 cut(s) 101, 821, 890
MspI CCGG 4 cut(s) 117, 346, 392, 504
MspR9I CCNGG 1 cut(s) 411
MvaI CCWGG 1 cut(s) 411
MwoI GCNNNNNNNGC 3 cut(s) 101, 104, 113
NaeI GCCGGC 1 cut(s) 118
NdeII GATC 5 cut(s) 20, 213, 284, 472, 853
NgoMIV GCCGGC 1 cut(s) 116
NlaIII CATG 1 cut(s) 737
NmeAIII GCCGAG 1 cut(s) 266
NmuCI GTSAC 1 cut(s) 15
NsiI ATGCAT 1 cut(s) 735
PcsI WCGNNNNNNNCGW 1 cut(s) 179
PdiI GCCGGC 1 cut(s) 118
PfeI GAWTC 5 cut(s) 89, 559, 744, 799, 864
PkrI GCNGC 4 cut(s) 97, 100, 103, 106
PleI GAGTC 2 cut(s) 265, 310
PpsI GAGTC 2 cut(s) 265, 310
PshBI ATTAAT 1 cut(s) 480
Psp6I CCWGG 1 cut(s) 409
PspFI CCCAGC 2 cut(s) 886, 890
PspGI CCWGG 1 cut(s) 409
PstI CTGCAG 1 cut(s) 106
PsuI RGATCY 3 cut(s) 213, 284, 853
PvuII CAGCTG 1 cut(s) 890
RsaI GTAC 1 cut(s) 539
RsaNI GTAC 1 cut(s) 538
SaqAI TTAA 3 cut(s) 465, 480, 792
SatI GCNGC 4 cut(s) 96, 99, 102, 105
Sau3AI GATC 5 cut(s) 20, 213, 284, 472, 853
SchI GAGTC 2 cut(s) 266, 310
ScrFI CCNGG 1 cut(s) 411
SfaNI GCATC 2 cut(s) 300, 477
SfcI CTRYAG 1 cut(s) 102
Sse9I AATT 7 cut(s) 154, 160, 204, 349, 370, 677, 785
SsiI CCGC 6 cut(s) 80, 93, 96, 99, 437, 821
SspMI CTAG 3 cut(s) 59, 563, 813
StyD4I CCNGG 1 cut(s) 409
TaaI ACNGT 1 cut(s) 198
TaiI ACGT 1 cut(s) 778
TaqI TCGA 6 cut(s) 200, 353, 374, 681, 721, 877
TasI AATT 7 cut(s) 154, 160, 204, 349, 370, 677, 785
TauI GCSGC 2 cut(s) 98, 101
TfiI GAWTC 5 cut(s) 89, 559, 744, 799, 864
Tru1I TTAA 3 cut(s) 465, 480, 792
Tru9I TTAA 3 cut(s) 465, 480, 792
TseFI GTSAC 1 cut(s) 15
TseI GCWGC 2 cut(s) 101, 104
Tsp45I GTSAC 1 cut(s) 15
TspDTI ATGAA 2 cut(s) 669, 703
TspGWI ACGGA 2 cut(s) 438, 768
VspI ATTAAT 1 cut(s) 480
XapI RAATTY 4 cut(s) 204, 349, 677, 785
XbaI TCTAGA 1 cut(s) 562
XspI CTAG 3 cut(s) 59, 563, 813
Zsp2I ATGCAT 1 cut(s) 735
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.