FvH4_6g13970

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0007210
Physical Location & Seq
Forward (+)
8563628 .. 8567251
3624 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g13970.t1

Sequence Viewer

Length: 867 bp
ATGGACGACAAAGACCTAGACGACGCCGCTCTCTGGGCCGTGATCGACTCCGCCGCCGCCTCCCACACCTCCAAATCCAAATTCCAATCCCGCCAACCCCTCGCGATCCAATACCACCACCGCCCCTCGCCGCCGATCTCAAACCCTTCGCCGCCGCCGAAGCTCTTCAAGACCGCTCGGATCTCCTACTCCGCCGACTCCGACTCCAAATCGGAGGGCGAGGTCGTCGAGGAGCCTTGGGCCTTCCACCCGCCGAGGAAGATCGCCAGGTCAGGAAACGACGGCAATTCTCTCGCCGTCGTCAGAAATGTGCCGCGCACGCCTACCACGCCGGTGTACGCTTCGCCGGAGTCGCGTCTGTCGCCGGGAATCGGGAGGTTTAACAGTCCTGGTAGCTATCCGCAGAGAGAAGAGAGGGAGAATAATAATCCGGTGCAGACGGCGCAGCATAGCTTGGCTGGAATGTTTCCTTCAGTTTCGTTGTTCAAGGAGTATCAAGATGCAGCTATGGCGATCTTGGAGAAAACTGACTACGTTAAGATTCATGGGAATACTTATATCAAAAAGTCAGGTTGGAGGAAGATATCATTTTACTTCAATCTCTCTTTCGAGATCAAAGACAAGAACATTGAGTTTGATGAGGGTCGGAATGTTCTGCGTGCAGAGTTTGTGGTTCGGGCACACATGCAGGGTGGTAGATTCTCAGATGGATGGGGCTCCTGTGATCGGCGGGAGAAGAGATTCAACAAACCAAATCATGATATTCCAAGTACAGCAGAGACCAGGGCGAAAAATAAAGCATCCTCGGACTTGCTAGGAATTGGTGATTACAGACCTGGTGCAACTCAAGACCACCCATATCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

289

Amino Acids

32.26

Weight (kDa)

9.13

Isoelectric Point (pI)

49.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 29, 176
AccII CGCG 3 cut(s) 104, 316, 355
AclWI GGATC 2 cut(s) 100, 188
AcsI RAATTY 1 cut(s) 80
AcuI CTGAAG 1 cut(s) 456
AcyI GRCGYC 1 cut(s) 24
AfaI GTAC 2 cut(s) 338, 772
AfiI CCNNNNNNNGG 3 cut(s) 33, 371, 726
AgsI TTSAA 4 cut(s) 169, 487, 598, 745
AjnI CCWGG 4 cut(s) 266, 388, 782, 835
AjuI GAANNNNNNNTTGG 2 cut(s) 65, 97
AleI CACNNNNGTG 1 cut(s) 332
AluBI AGCT 4 cut(s) 163, 396, 453, 506
AluI AGCT 4 cut(s) 163, 396, 453, 506
Alw26I GTCTC 1 cut(s) 773
AlwI GGATC 2 cut(s) 100, 188
AoxI GGCC 2 cut(s) 36, 240
ApeKI GCWGC 2 cut(s) 445, 503
ApoI RAATTY 1 cut(s) 80
Asp700I GAANNNNTTC 2 cut(s) 164, 740
AspLEI GCGC 2 cut(s) 318, 445
AspS9I GGNCC 2 cut(s) 36, 240
AsuC2I CCSGG 1 cut(s) 366
AsuHPI GGTGA 1 cut(s) 836
BaeGI GKGCMC 1 cut(s) 682
BanII GRGCYC 1 cut(s) 719
BbvI GCAGC 2 cut(s) 457, 515
BccI CCATC 2 cut(s) 701, 705
BceAI ACGGC 4 cut(s) 23, 281, 298, 456
BcgI CGANNNNNNTGC 2 cut(s) 274, 308
BciT130I CCWGG 4 cut(s) 268, 390, 784, 837
BcnI CCSGG 1 cut(s) 366
BcoDI GTCTC 1 cut(s) 773
BfaI CTAG 2 cut(s) 17, 815
BisI GCNGC 9 cut(s) 27, 54, 57, 131, 152, 155, 314, 446, 504
BlsI GCNGC 9 cut(s) 28, 55, 58, 132, 153, 156, 315, 447, 505
Bme1390I CCNGG 5 cut(s) 268, 366, 390, 784, 837
BmgT120I GGNCC 2 cut(s) 36, 240
BmiI GGNNCC 2 cut(s) 234, 718
BmrFI CCNGG 5 cut(s) 268, 366, 390, 784, 837
BmsI GCATC 2 cut(s) 490, 809
BpuEI CTTGAG 1 cut(s) 831
BpuMI CCSGG 1 cut(s) 366
BsaHI GRCGYC 1 cut(s) 24
BsaI GGTCTC 1 cut(s) 773
BsaJI CCNNGG 4 cut(s) 236, 254, 783, 804
BsaWI WCCGGW 1 cut(s) 430
BsaXI ACNNNNNCTCC 2 cut(s) 188, 218
Bsc4I CCNNNNNNNGG 3 cut(s) 33, 371, 726
Bse118I RCCGGY 1 cut(s) 331
BseBI CCWGG 4 cut(s) 268, 390, 784, 837
BseDI CCNNGG 4 cut(s) 236, 254, 783, 804
BseGI GGATG 2 cut(s) 716, 800
BseLI CCNNNNNNNGG 3 cut(s) 33, 371, 726
BseMII CTCAG 1 cut(s) 717
BseRI GAGGAG 1 cut(s) 245
BseSI GKGCMC 1 cut(s) 682
BseXI GCAGC 2 cut(s) 457, 515
BsgI GTGCAG 2 cut(s) 455, 681
Bsh1236I CGCG 3 cut(s) 104, 316, 355
BshFI GGCC 2 cut(s) 38, 242
BsiSI CCGG 4 cut(s) 332, 347, 365, 431
BslI CCNNNNNNNGG 3 cut(s) 33, 371, 726
BsmAI GTCTC 1 cut(s) 773
BsnI GGCC 2 cut(s) 38, 242
Bso31I GGTCTC 1 cut(s) 773
Bsp1286I GDGCHC 2 cut(s) 682, 719
Bsp143I GATC 8 cut(s) 42, 105, 135, 180, 261, 513, 612, 724
Bsp68I TCGCGA 1 cut(s) 104
BspANI GGCC 2 cut(s) 38, 242
BspCNI CTCAG 1 cut(s) 716
BspFNI CGCG 3 cut(s) 104, 316, 355
BspHI TCATGA 1 cut(s) 757
BspLI GGNNCC 2 cut(s) 234, 718
BspPI GGATC 2 cut(s) 100, 188
BspQI GCTCTTC 1 cut(s) 170
BspTNI GGTCTC 1 cut(s) 773
BsrBI CCGCTC 2 cut(s) 29, 176
BsrFI RCCGGY 1 cut(s) 331
BssAI RCCGGY 1 cut(s) 331
BssECI CCNNGG 4 cut(s) 236, 254, 783, 804
BssMI GATC 8 cut(s) 42, 105, 135, 180, 261, 513, 612, 724
BssNI GRCGYC 1 cut(s) 24
BssT1I CCWWGG 1 cut(s) 236
Bst2UI CCWGG 4 cut(s) 268, 390, 784, 837
Bst4CI ACNGT 1 cut(s) 386
Bst6I CTCTTC 3 cut(s) 170, 405, 731
BstACI GRCGYC 1 cut(s) 24
BstC8I GCNNGC 2 cut(s) 320, 660
BstDEI CTNAG 1 cut(s) 703
BstF5I GGATG 2 cut(s) 716, 800
BstFNI CGCG 3 cut(s) 104, 316, 355
BstHHI GCGC 2 cut(s) 318, 445
BstKTI GATC 8 cut(s) 45, 108, 138, 183, 264, 516, 615, 727
BstMAI GTCTC 1 cut(s) 773
BstMBI GATC 8 cut(s) 42, 105, 135, 180, 261, 513, 612, 724
BstMWI GCNNNNNNNGC 8 cut(s) 35, 160, 319, 328, 352, 361, 442, 509
BstNI CCWGG 4 cut(s) 268, 390, 784, 837
BstNSI RCATGY 1 cut(s) 688
BstSCI CCNGG 5 cut(s) 266, 364, 388, 782, 835
BstSLI GKGCMC 1 cut(s) 682
BstUI CGCG 3 cut(s) 104, 316, 355
BstV1I GCAGC 2 cut(s) 457, 515
BstX2I RGATCY 1 cut(s) 180
BstYI RGATCY 1 cut(s) 180
BsuRI GGCC 2 cut(s) 38, 242
BtsCI GGATG 2 cut(s) 716, 800
BtuMI TCGCGA 1 cut(s) 104
Cac8I GCNNGC 2 cut(s) 320, 660
CciI TCATGA 1 cut(s) 757
CfoI GCGC 2 cut(s) 318, 445
Cfr10I RCCGGY 1 cut(s) 331
Cfr13I GGNCC 2 cut(s) 36, 240
CseI GACGC 2 cut(s) 32, 344
CsiI ACCWGGT 1 cut(s) 835
Csp6I GTAC 2 cut(s) 337, 771
CviAII CATG 4 cut(s) 545, 685, 758, 864
CviJI RGCY 9 cut(s) 38, 163, 235, 242, 396, 453, 458, 506, 717
CviKI_1 RGCY 9 cut(s) 38, 163, 235, 242, 396, 453, 458, 506, 717
CviQI GTAC 2 cut(s) 337, 771
DdeI CTNAG 1 cut(s) 703
DpnI GATC 8 cut(s) 44, 107, 137, 182, 263, 515, 614, 726
DpnII GATC 8 cut(s) 42, 105, 135, 180, 261, 513, 612, 724
Eam1104I CTCTTC 3 cut(s) 170, 405, 731
EarI CTCTTC 3 cut(s) 170, 405, 731
EciI GGCGGA 2 cut(s) 40, 181
Eco130I CCWWGG 1 cut(s) 236
Eco24I GRGCYC 1 cut(s) 719
Eco31I GGTCTC 1 cut(s) 773
Eco32I GATATC 1 cut(s) 585
Eco57I CTGAAG 1 cut(s) 456
EcoRII CCWGG 4 cut(s) 266, 388, 782, 835
EcoRV GATATC 1 cut(s) 585
EcoT14I CCWWGG 1 cut(s) 236
EcoT38I GRGCYC 1 cut(s) 719
ErhI CCWWGG 1 cut(s) 236
FaeI CATG 4 cut(s) 548, 688, 761, 867
FaiI YATR 8 cut(s) 450, 509, 546, 558, 686, 759, 859, 865
FatI CATG 4 cut(s) 544, 684, 757, 863
FauI CCCGC 3 cut(s) 98, 258, 723
Fnu4HI GCNGC 9 cut(s) 27, 54, 57, 131, 152, 155, 314, 446, 504
FokI GGATG 2 cut(s) 723, 787
FriOI GRGCYC 1 cut(s) 719
Fsp4HI GCNGC 9 cut(s) 27, 54, 57, 131, 152, 155, 314, 446, 504
FspBI CTAG 2 cut(s) 17, 815
GlaI GCGC 2 cut(s) 317, 444
GluI GCNGC 9 cut(s) 27, 54, 57, 131, 152, 155, 314, 446, 504
HaeIII GGCC 2 cut(s) 38, 242
HapII CCGG 4 cut(s) 332, 347, 365, 431
HgaI GACGC 2 cut(s) 32, 344
HhaI GCGC 2 cut(s) 318, 445
Hin1I GRCGYC 1 cut(s) 24
Hin1II CATG 4 cut(s) 548, 688, 761, 867
Hin6I GCGC 2 cut(s) 316, 443
HinP1I GCGC 2 cut(s) 316, 443
HinfI GANTC 8 cut(s) 47, 197, 203, 350, 369, 541, 699, 741
HpaII CCGG 4 cut(s) 332, 347, 365, 431
HphI GGTGA 1 cut(s) 836
Hpy166II GTNNAC 1 cut(s) 337
Hpy188I TCNGA 7 cut(s) 180, 202, 214, 305, 648, 706, 808
Hpy188III TCNNGA 8 cut(s) 103, 169, 273, 373, 497, 610, 758, 848
Hpy8I GTNNAC 1 cut(s) 337
Hpy99I CGWCG 4 cut(s) 26, 230, 284, 302
HpyAV CCTTC 3 cut(s) 156, 253, 480
HpyCH4III ACNGT 1 cut(s) 386
HpyCH4IV ACGT 1 cut(s) 534
HpyCH4V TGCA 5 cut(s) 436, 503, 662, 688, 842
HpyF10VI GCNNNNNNNGC 8 cut(s) 35, 160, 319, 328, 352, 361, 442, 509
HpyF3I CTNAG 1 cut(s) 703
HpySE526I ACGT 1 cut(s) 534
Hsp92I GRCGYC 1 cut(s) 24
Hsp92II CATG 4 cut(s) 548, 688, 761, 867
HspAI GCGC 2 cut(s) 316, 443
Kzo9I GATC 8 cut(s) 42, 105, 135, 180, 261, 513, 612, 724
LguI GCTCTTC 1 cut(s) 170
LmnI GCTCC 2 cut(s) 232, 722
Lsp1109I GCAGC 2 cut(s) 457, 515
LweI GCATC 2 cut(s) 490, 809
MabI ACCWGGT 1 cut(s) 835
MaeI CTAG 2 cut(s) 17, 815
MaeII ACGT 1 cut(s) 534
MalI GATC 8 cut(s) 44, 107, 137, 182, 263, 515, 614, 726
MbiI CCGCTC 2 cut(s) 29, 176
MboI GATC 8 cut(s) 42, 105, 135, 180, 261, 513, 612, 724
MboII GAAGA 5 cut(s) 157, 271, 422, 592, 748
MflI RGATCY 1 cut(s) 180
MhlI GDGCHC 2 cut(s) 682, 719
MluCI AATT 3 cut(s) 80, 286, 819
MlyI GAGTC 4 cut(s) 41, 191, 197, 359
MmeI TCCRAC 3 cut(s) 225, 554, 626
MroXI GAANNNNTTC 2 cut(s) 164, 740
MseI TTAA 2 cut(s) 381, 537
MslI CAYNNNNRTG 2 cut(s) 332, 862
MspI CCGG 4 cut(s) 332, 347, 365, 431
MspR9I CCNGG 5 cut(s) 268, 366, 390, 784, 837
MvaI CCWGG 4 cut(s) 268, 390, 784, 837
MvnI CGCG 3 cut(s) 104, 316, 355
MwoI GCNNNNNNNGC 8 cut(s) 35, 160, 319, 328, 352, 361, 442, 509
NciI CCSGG 1 cut(s) 366
NdeII GATC 8 cut(s) 42, 105, 135, 180, 261, 513, 612, 724
NlaIII CATG 4 cut(s) 548, 688, 761, 867
NlaIV GGNNCC 2 cut(s) 234, 718
NmeAIII GCCGAG 1 cut(s) 279
NruI TCGCGA 1 cut(s) 104
NspI RCATGY 1 cut(s) 688
OliI CACNNNNGTG 1 cut(s) 332
PagI TCATGA 1 cut(s) 757
PciSI GCTCTTC 1 cut(s) 170
PcsI WCGNNNNNNNCGW 1 cut(s) 155
PdmI GAANNNNTTC 2 cut(s) 164, 740
PfeI GAWTC 4 cut(s) 369, 541, 699, 741
PkrI GCNGC 9 cut(s) 28, 55, 58, 132, 153, 156, 315, 447, 505
PleI GAGTC 4 cut(s) 41, 191, 197, 358
PpsI GAGTC 4 cut(s) 41, 191, 197, 358
Psp6I CCWGG 4 cut(s) 266, 388, 782, 835
PspGI CCWGG 4 cut(s) 266, 388, 782, 835
PspN4I GGNNCC 2 cut(s) 234, 718
PspPI GGNCC 2 cut(s) 36, 240
PsuI RGATCY 1 cut(s) 180
RruI TCGCGA 1 cut(s) 104
RsaI GTAC 2 cut(s) 338, 772
RsaNI GTAC 2 cut(s) 337, 771
RseI CAYNNNNRTG 2 cut(s) 332, 862
SapI GCTCTTC 1 cut(s) 170
SaqAI TTAA 2 cut(s) 381, 537
SatI GCNGC 9 cut(s) 27, 54, 57, 131, 152, 155, 314, 446, 504
Sau3AI GATC 8 cut(s) 42, 105, 135, 180, 261, 513, 612, 724
Sau96I GGNCC 2 cut(s) 36, 240
SchI GAGTC 4 cut(s) 41, 191, 197, 359
ScrFI CCNGG 5 cut(s) 268, 366, 390, 784, 837
SduI GDGCHC 2 cut(s) 682, 719
SexAI ACCWGGT 1 cut(s) 835
SfaNI GCATC 2 cut(s) 490, 809
SgrAI CRCCGGYG 1 cut(s) 331
SmiMI CAYNNNNRTG 2 cut(s) 332, 862
SmlI CTYRAG 1 cut(s) 846
SmoI CTYRAG 1 cut(s) 846
Sse9I AATT 3 cut(s) 80, 286, 819
SspMI CTAG 2 cut(s) 17, 815
StyD4I CCNGG 5 cut(s) 266, 364, 388, 782, 835
StyI CCWWGG 1 cut(s) 236
TaaI ACNGT 1 cut(s) 386
TaiI ACGT 1 cut(s) 537
TaqI TCGA 3 cut(s) 45, 228, 609
TasI AATT 3 cut(s) 80, 286, 819
TatI WGTACW 1 cut(s) 770
TauI GCSGC 7 cut(s) 29, 56, 59, 133, 154, 157, 316
TfiI GAWTC 4 cut(s) 369, 541, 699, 741
Tru1I TTAA 2 cut(s) 381, 537
Tru9I TTAA 2 cut(s) 381, 537
TseI GCWGC 2 cut(s) 445, 503
TspDTI ATGAA 1 cut(s) 533
XapI RAATTY 1 cut(s) 80
XceI RCATGY 1 cut(s) 688
XmnI GAANNNNTTC 2 cut(s) 164, 740
XspI CTAG 2 cut(s) 17, 815
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.