MD15G1437500.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0007210
Physical Location & Seq
Reverse (-)
53723212 .. 53723514
303 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1437500.v1.1.491

Sequence Viewer

Length: 303 bp
ATGAACGACACTAGTCCTCTTGTCGTAGATGTGCAGCGCACGACGCCTACCACTCTTACGACGCCGTTTTATTCGTTGCCGGAAACGTACTTATCACCGGGGATCGAAAATTTTGCGAGCCCTTTGAGCCAGGCGCAGAGGGATGAGAGGGATGATAGCTCTATAGCTGCTCATAGCATATCCGGGAGGTTCCCTTCGGTCTCTTTGTTCAAGGAGTATAAGAATGCAGCTATGGCGATTCTAGAGAAAACAGATTACACTATGATTTATGGGCATCATTTCATCAAAAAGTCAGGGTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

101

Amino Acids

11.22

Weight (kDa)

5.83

Isoelectric Point (pI)

39.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 110
AcsI RAATTY 1 cut(s) 109
AcyI GRCGYC 2 cut(s) 44, 62
AfaI GTAC 1 cut(s) 89
AgsI TTSAA 1 cut(s) 211
AhlI ACTAGT 1 cut(s) 11
AjnI CCWGG 1 cut(s) 129
AluBI AGCT 3 cut(s) 159, 167, 230
AluI AGCT 3 cut(s) 159, 167, 230
Alw26I GTCTC 1 cut(s) 205
AlwI GGATC 1 cut(s) 110
ApeKI GCWGC 3 cut(s) 34, 167, 227
ApoI RAATTY 1 cut(s) 109
AspLEI GCGC 2 cut(s) 39, 136
AsuC2I CCSGG 2 cut(s) 99, 184
AsuHPI GGTGA 1 cut(s) 87
BanII GRGCYC 1 cut(s) 122
BbvI GCAGC 3 cut(s) 46, 154, 239
BceAI ACGGC 1 cut(s) 49
BcgI CGANNNNNNTGC 2 cut(s) 95, 129
BciT130I CCWGG 1 cut(s) 131
BcnI CCSGG 2 cut(s) 99, 184
BcoDI GTCTC 1 cut(s) 205
BcuI ACTAGT 1 cut(s) 11
BfaI CTAG 2 cut(s) 12, 242
BfmI CTRYAG 1 cut(s) 162
BisI GCNGC 3 cut(s) 35, 168, 228
BlsI GCNGC 3 cut(s) 36, 169, 229
Bme1390I CCNGG 3 cut(s) 99, 131, 184
BmiI GGNNCC 1 cut(s) 191
BmrFI CCNGG 3 cut(s) 99, 131, 184
BmsI GCATC 1 cut(s) 283
BoxI GACNNNNGTC 1 cut(s) 12
BpuMI CCSGG 2 cut(s) 99, 184
BsaHI GRCGYC 2 cut(s) 44, 62
BsaI GGTCTC 1 cut(s) 205
BsaJI CCNNGG 1 cut(s) 98
BseBI CCWGG 1 cut(s) 131
BseDI CCNNGG 1 cut(s) 98
BseGI GGATG 2 cut(s) 148, 157
BseXI GCAGC 3 cut(s) 46, 154, 239
BsgI GTGCAG 1 cut(s) 53
BsiSI CCGG 3 cut(s) 80, 98, 183
BsmAI GTCTC 1 cut(s) 205
BsmI GAATGC 1 cut(s) 229
Bso31I GGTCTC 1 cut(s) 205
Bsp1286I GDGCHC 1 cut(s) 122
Bsp143I GATC 1 cut(s) 102
BspLI GGNNCC 1 cut(s) 191
BspPI GGATC 1 cut(s) 110
BspTNI GGTCTC 1 cut(s) 205
BssECI CCNNGG 1 cut(s) 98
BssMI GATC 1 cut(s) 102
BssNI GRCGYC 2 cut(s) 44, 62
Bst2UI CCWGG 1 cut(s) 131
BstACI GRCGYC 2 cut(s) 44, 62
BstC8I GCNNGC 1 cut(s) 118
BstF5I GGATG 2 cut(s) 148, 157
BstHHI GCGC 2 cut(s) 39, 136
BstKTI GATC 1 cut(s) 105
BstMAI GTCTC 1 cut(s) 205
BstMBI GATC 1 cut(s) 102
BstMWI GCNNNNNNNGC 3 cut(s) 43, 126, 233
BstNI CCWGG 1 cut(s) 131
BstPAI GACNNNNGTC 1 cut(s) 12
BstSCI CCNGG 3 cut(s) 97, 129, 182
BstSFI CTRYAG 1 cut(s) 162
BstV1I GCAGC 3 cut(s) 46, 154, 239
BtsCI GGATG 2 cut(s) 148, 157
Cac8I GCNNGC 1 cut(s) 118
CfoI GCGC 2 cut(s) 39, 136
CseI GACGC 2 cut(s) 52, 70
Csp6I GTAC 1 cut(s) 88
CviJI RGCY 5 cut(s) 120, 129, 159, 167, 230
CviKI_1 RGCY 5 cut(s) 120, 129, 159, 167, 230
CviQI GTAC 1 cut(s) 88
DpnI GATC 1 cut(s) 104
DpnII GATC 1 cut(s) 102
Eco24I GRGCYC 1 cut(s) 122
Eco31I GGTCTC 1 cut(s) 205
EcoRII CCWGG 1 cut(s) 129
EcoT38I GRGCYC 1 cut(s) 122
FaiI YATR 7 cut(s) 164, 174, 179, 219, 233, 263, 270
Fnu4HI GCNGC 3 cut(s) 35, 168, 228
FokI GGATG 2 cut(s) 155, 164
FriOI GRGCYC 1 cut(s) 122
Fsp4HI GCNGC 3 cut(s) 35, 168, 228
FspBI CTAG 2 cut(s) 12, 242
GlaI GCGC 2 cut(s) 38, 135
GluI GCNGC 3 cut(s) 35, 168, 228
HapII CCGG 3 cut(s) 80, 98, 183
HgaI GACGC 2 cut(s) 52, 70
HhaI GCGC 2 cut(s) 39, 136
Hin1I GRCGYC 2 cut(s) 44, 62
Hin6I GCGC 2 cut(s) 37, 134
HinP1I GCGC 2 cut(s) 37, 134
HinfI GANTC 1 cut(s) 238
HpaII CCGG 3 cut(s) 80, 98, 183
HphI GGTGA 1 cut(s) 87
Hpy188III TCNNGA 1 cut(s) 242
Hpy99I CGWCG 2 cut(s) 46, 64
HpyAV CCTTC 1 cut(s) 204
HpyCH4IV ACGT 1 cut(s) 86
HpyCH4V TGCA 2 cut(s) 34, 227
HpyF10VI GCNNNNNNNGC 3 cut(s) 43, 126, 233
HpySE526I ACGT 1 cut(s) 86
Hsp92I GRCGYC 2 cut(s) 44, 62
HspAI GCGC 2 cut(s) 37, 134
Kzo9I GATC 1 cut(s) 102
LpnPI CCDG 6 cut(s) 93, 111, 116, 143, 196, 279
Lsp1109I GCAGC 3 cut(s) 46, 154, 239
LweI GCATC 1 cut(s) 283
MaeI CTAG 2 cut(s) 12, 242
MaeII ACGT 1 cut(s) 86
MalI GATC 1 cut(s) 104
MboI GATC 1 cut(s) 102
MhlI GDGCHC 1 cut(s) 122
MluCI AATT 1 cut(s) 109
MnlI CCTC 4 cut(s) 27, 132, 141, 180
MspI CCGG 3 cut(s) 80, 98, 183
MspR9I CCNGG 3 cut(s) 99, 131, 184
Mva1269I GAATGC 1 cut(s) 229
MvaI CCWGG 1 cut(s) 131
MwoI GCNNNNNNNGC 3 cut(s) 43, 126, 233
NciI CCSGG 2 cut(s) 99, 184
NdeII GATC 1 cut(s) 102
NlaIV GGNNCC 1 cut(s) 191
PctI GAATGC 1 cut(s) 229
PfeI GAWTC 1 cut(s) 238
PfoI TCCNGGA 1 cut(s) 182
PkrI GCNGC 3 cut(s) 36, 169, 229
PshAI GACNNNNGTC 1 cut(s) 12
Psp6I CCWGG 1 cut(s) 129
PspGI CCWGG 1 cut(s) 129
PspN4I GGNNCC 1 cut(s) 191
RsaI GTAC 1 cut(s) 89
RsaNI GTAC 1 cut(s) 88
SatI GCNGC 3 cut(s) 35, 168, 228
Sau3AI GATC 1 cut(s) 102
ScrFI CCNGG 3 cut(s) 99, 131, 184
SduI GDGCHC 1 cut(s) 122
SetI ASST 5 cut(s) 89, 161, 169, 191, 232
SfaNI GCATC 1 cut(s) 283
SfcI CTRYAG 1 cut(s) 162
SpeI ACTAGT 1 cut(s) 11
Sse9I AATT 1 cut(s) 109
SspMI CTAG 2 cut(s) 12, 242
StyD4I CCNGG 3 cut(s) 97, 129, 182
TaiI ACGT 1 cut(s) 89
TaqI TCGA 1 cut(s) 105
TaqII GACCGA 1 cut(s) 187
TasI AATT 1 cut(s) 109
TfiI GAWTC 1 cut(s) 238
TseI GCWGC 3 cut(s) 34, 167, 227
TspDTI ATGAA 2 cut(s) 17, 271
XapI RAATTY 1 cut(s) 109
XbaI TCTAGA 1 cut(s) 241
XspI CTAG 2 cut(s) 12, 242
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.