Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0007210

Physical Location & Seq

Genomic Coordinates Reverse (-)

24719054 .. 24721695

Gene Structure 2642 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G253700.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGGCCTCGCCCAACCTCTACCCCATCGTCGACGACAAGGACCTAGACGACGCCGCTTTGTGGGCCGTCATCGACTCCGCCGCCGCCTCACACTCCTCCTCCAAGTACAAGCCCCAATCCCGCAAGCCCCTCGCAATCAAATATCCAAATTACCCTTCGCCTCCACCGAAGCTCTTCAAGACCCCGCGGCTCCCCTTCTCCGACGACTCAGGCTCAAAGTCGTCGTCGACCGAGGGAGAGGTCGTCGAGGACCTCTCGGCTTTCCATCCGCCGAGGAAAATGGCCAGAACCTCTTCTTCTGGAGTAAACGACACCAGTCCTCTTGTCGTAGTCCGAAATGTGCAGCGAACGACGCCGACCACGCCTACGACGCCGTTTTACTCGTCCCCGGAGACACACGTGTCTCCTGGCATCGGAAATTATGCTAGCCCTGTGTGCTATGGGCAGAGAGATGAGAGGGATAATAGCTCTGGCTCTGTGCATAGCTTGACCGGGAGGTTCCCTTCAGTTTCTTTGTTCAAGGAGTATCAGAATGCGGCAATGGCGATTTTGGAGAAAACAGATTACACTATGATTTCTGGGCACCCTTTCATCAAAAAATCAGGTTGGAGGAAGATATCGTTTTACTTCAATCTCTCCTTTGAGATCAAAGACAAGACCATTGAGTTTGATGAGAACCGGAATGTTCTGCGCGCTGAATTTGTGGTTCGGGCACATATGCAGGGCGGGAGGTTCTCAGATGGATGGGGCGCGTGTGACCGGCGTGAGAAGAAATTCAATAAGCCAAATCATGATATTCCGAGTACAGCAGAGACCAGGGCCAAAAGCAAAGCATCCCAGGACCTGCTAGGAATTGGAGAGTACCGACCAGGAGCAAGCCAATTCCACCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

298

Amino Acids

33.0

Weight (kDa)

9.13

Isoelectric Point (pI)

47.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007210)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09430 AT3G09430 AT3G09430
fragaria_vesca	FvH4_6g13970 FvH4_6g13970 FvH4_6g13970 FvH4_6g13970
malus_domestica	MD02G1131100.v1.1 MD04G1127200.v1.1 MD05G1218700.v1.1 MD12G1140400.v1.1 MD15G1437500.v1.1 MD16G1182100.v1.1
prunus_persica	Prupe.6G253700_v2.0.a1 Prupe.6G253700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0466791
rosa_laevigata	RLG00000024552
rosa_roxburghii	Rroxscaffold_6G00414140
rosa_rugosa	Rorug03G0083800 Rorug03G0083800
rosa_samantha	Rh3AG131200 Rh3BG152300 Rh3CG152400 Rh3DG153400
rosa_wichuraiana	Rw3G012400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	400
Acc36I	ACCTGC	1 cut(s)	852
AccB1I	GGYRCC	1 cut(s)	582
AccI	GTMKAC	2 cut(s)	30, 227
AccII	CGCG	3 cut(s)	187, 693, 752
AcoI	YGGCCR	1 cut(s)	282
AcsI	RAATTY	2 cut(s)	698, 773
AcuI	CTGAAG	1 cut(s)	489
AcvI	CACGTG	1 cut(s)	400
AcyI	GRCGYC	3 cut(s)	51, 353, 371
AfaI	GTAC	3 cut(s)	107, 805, 863
AfiI	CCNNNNNNNGG	2 cut(s)	60, 413
AflIII	ACRYGT	2 cut(s)	397, 399
AgsI	TTSAA	4 cut(s)	178, 520, 631, 778
AjnI	CCWGG	4 cut(s)	406, 815, 837, 868
AjuI	GAANNNNNNNTTGG	2 cut(s)	139, 171
AluBI	AGCT	3 cut(s)	172, 468, 486
AluI	AGCT	3 cut(s)	172, 468, 486
Alw26I	GTCTC	3 cut(s)	386, 408, 806
AlwNI	CAGNNNCTG	1 cut(s)	844
AoxI	GGCC	4 cut(s)	3, 63, 282, 819
ApeKI	GCWGC	1 cut(s)	343
ApoI	RAATTY	2 cut(s)	698, 773
ArsI	GACNNNNNNTTYG	2 cut(s)	209, 241
Asp700I	GAANNNNTTC	3 cut(s)	173, 292, 773
AspLEI	GCGC	3 cut(s)	693, 695, 752
AspS9I	GGNCC	5 cut(s)	40, 63, 250, 819, 841
AsuC2I	CCSGG	2 cut(s)	389, 493
AsuNHI	GCTAGC	1 cut(s)	425
AvaII	GGWCC	3 cut(s)	40, 250, 841
BaeGI	GKGCMC	2 cut(s)	585, 715
BalI	TGGCCA	1 cut(s)	284
BanI	GGYRCC	1 cut(s)	582
BbrPI	CACGTG	1 cut(s)	400
BbvI	GCAGC	1 cut(s)	355
BccI	CCATC	4 cut(s)	32, 273, 734, 738
BceAI	ACGGC	2 cut(s)	50, 358
BcgI	CGANNNNNNTGC	2 cut(s)	112, 146
BciT130I	CCWGG	4 cut(s)	408, 817, 839, 870
BcnI	CCSGG	2 cut(s)	389, 493
BcoDI	GTCTC	3 cut(s)	386, 408, 806
BfaI	CTAG	3 cut(s)	44, 426, 848
BfuAI	ACCTGC	1 cut(s)	852
BisI	GCNGC	6 cut(s)	54, 81, 84, 188, 344, 537
BlsI	GCNGC	6 cut(s)	55, 82, 85, 189, 345, 538
Bme1390I	CCNGG	6 cut(s)	389, 408, 493, 817, 839, 870
Bme18I	GGWCC	3 cut(s)	40, 250, 841
BmgT120I	GGNCC	5 cut(s)	40, 63, 250, 819, 841
BmiI	GGNNCC	3 cut(s)	191, 500, 584
BmrFI	CCNGG	6 cut(s)	389, 408, 493, 817, 839, 870
BmsI	GCATC	2 cut(s)	420, 842
BmtI	GCTAGC	1 cut(s)	429
BoxI	GACNNNNGTC	1 cut(s)	315
BplI	GAGNNNNNCTC	2 cut(s)	239, 271
BpmI	CTGGAG	1 cut(s)	321
BpuMI	CCSGG	2 cut(s)	389, 493
BsaAI	YACGTR	1 cut(s)	400
BsaHI	GRCGYC	3 cut(s)	51, 353, 371
BsaI	GGTCTC	1 cut(s)	806
BsaJI	CCNNGG	6 cut(s)	185, 231, 272, 387, 816, 837
BsaWI	WCCGGW	1 cut(s)	678
BsaXI	ACNNNNNCTCC	4 cut(s)	83, 113, 228, 258
Bsc4I	CCNNNNNNNGG	2 cut(s)	60, 413
Bse118I	RCCGGY	1 cut(s)	759
Bse1I	ACTGG	1 cut(s)	315
Bse3DI	GCAATG	1 cut(s)	546
BseBI	CCWGG	4 cut(s)	408, 817, 839, 870
BseDI	CCNNGG	6 cut(s)	185, 231, 272, 387, 816, 837
BseGI	GGATG	3 cut(s)	265, 749, 833
BseLI	CCNNNNNNNGG	2 cut(s)	60, 413
BseMI	GCAATG	1 cut(s)	546
BseMII	CTCAG	2 cut(s)	222, 750
BseNI	ACTGG	1 cut(s)	315
BsePI	GCGCGC	1 cut(s)	691
BseRI	GAGGAG	2 cut(s)	85, 88
BseSI	GKGCMC	2 cut(s)	585, 715
BseXI	GCAGC	1 cut(s)	355
BsgI	GTGCAG	1 cut(s)	362
Bsh1236I	CGCG	3 cut(s)	187, 693, 752
Bsh1285I	CGRYCG	1 cut(s)	231
BshFI	GGCC	4 cut(s)	5, 65, 284, 821
BshNI	GGYRCC	1 cut(s)	582
BsiEI	CGRYCG	1 cut(s)	231
BsiSI	CCGG	4 cut(s)	389, 492, 679, 760
BslFI	GGGAC	1 cut(s)	370
BslI	CCNNNNNNNGG	2 cut(s)	60, 413
BsmAI	GTCTC	3 cut(s)	386, 408, 806
BsmFI	GGGAC	1 cut(s)	370
BsmI	GAATGC	1 cut(s)	538
BsnI	GGCC	4 cut(s)	5, 65, 284, 821
Bso31I	GGTCTC	1 cut(s)	806
Bsp1286I	GDGCHC	2 cut(s)	585, 715
Bsp143I	GATC	1 cut(s)	645
BspANI	GGCC	4 cut(s)	5, 65, 284, 821
BspCNI	CTCAG	2 cut(s)	221, 749
BspFNI	CGCG	3 cut(s)	187, 693, 752
BspHI	TCATGA	1 cut(s)	790
BspLI	GGNNCC	3 cut(s)	191, 500, 584
BspMI	ACCTGC	1 cut(s)	852
BspOI	GCTAGC	1 cut(s)	429
BspQI	GCTCTTC	1 cut(s)	179
BspT107I	GGYRCC	1 cut(s)	582
BspTNI	GGTCTC	1 cut(s)	806
BsrDI	GCAATG	1 cut(s)	546
BsrFI	RCCGGY	1 cut(s)	759
BsrI	ACTGG	1 cut(s)	315
BssAI	RCCGGY	1 cut(s)	759
BssECI	CCNNGG	6 cut(s)	185, 231, 272, 387, 816, 837
BssHII	GCGCGC	1 cut(s)	691
BssMI	GATC	1 cut(s)	645
BssNI	GRCGYC	3 cut(s)	51, 353, 371
Bst2UI	CCWGG	4 cut(s)	408, 817, 839, 870
Bst6I	CTCTTC	2 cut(s)	179, 298
BstACI	GRCGYC	3 cut(s)	51, 353, 371
BstBAI	YACGTR	1 cut(s)	400
BstC8I	GCNNGC	4 cut(s)	125, 427, 693, 877
BstDEI	CTNAG	2 cut(s)	208, 736
BstDSI	CCRYGG	1 cut(s)	185
BstF5I	GGATG	3 cut(s)	265, 749, 833
BstFNI	CGCG	3 cut(s)	187, 693, 752
BstHHI	GCGC	3 cut(s)	693, 695, 752
BstKTI	GATC	1 cut(s)	648
BstMAI	GTCTC	3 cut(s)	386, 408, 806
BstMBI	GATC	1 cut(s)	645
BstMCI	CGRYCG	1 cut(s)	231
BstMWI	GCNNNNNNNGC	6 cut(s)	62, 352, 361, 370, 435, 542
BstNI	CCWGG	4 cut(s)	408, 817, 839, 870
BstPAI	GACNNNNGTC	1 cut(s)	315
BstSCI	CCNGG	6 cut(s)	387, 406, 491, 815, 837, 868
BstSLI	GKGCMC	2 cut(s)	585, 715
BstUI	CGCG	3 cut(s)	187, 693, 752
BstV1I	GCAGC	1 cut(s)	355
BsuRI	GGCC	4 cut(s)	5, 65, 284, 821
BtgI	CCRYGG	1 cut(s)	185
BtsCI	GGATG	3 cut(s)	265, 749, 833
BveI	ACCTGC	1 cut(s)	852
Cac8I	GCNNGC	4 cut(s)	125, 427, 693, 877
CaiI	CAGNNNCTG	1 cut(s)	844
CciI	TCATGA	1 cut(s)	790
CfoI	GCGC	3 cut(s)	693, 695, 752
Cfr10I	RCCGGY	1 cut(s)	759
Cfr13I	GGNCC	5 cut(s)	40, 63, 250, 819, 841
Cfr42I	CCGCGG	1 cut(s)	188
CseI	GACGC	3 cut(s)	59, 361, 379
Csp6I	GTAC	3 cut(s)	106, 804, 862
CviAII	CATG	1 cut(s)	791
CviQI	GTAC	3 cut(s)	106, 804, 862
DdeI	CTNAG	2 cut(s)	208, 736
DpnI	GATC	1 cut(s)	647
DpnII	GATC	1 cut(s)	645
DrdI	GACNNNNNNGTC	1 cut(s)	400
DseDI	GACNNNNNNGTC	1 cut(s)	400
EaeI	YGGCCR	1 cut(s)	282
Eam1104I	CTCTTC	2 cut(s)	179, 298
EarI	CTCTTC	2 cut(s)	179, 298
EciI	GGCGGA	2 cut(s)	67, 258
Eco31I	GGTCTC	1 cut(s)	806
Eco32I	GATATC	1 cut(s)	618
Eco47I	GGWCC	3 cut(s)	40, 250, 841
Eco57I	CTGAAG	1 cut(s)	489
Eco72I	CACGTG	1 cut(s)	400
EcoO109I	RGGNCCY	3 cut(s)	40, 250, 841
EcoRII	CCWGG	4 cut(s)	406, 815, 837, 868
EcoRV	GATATC	1 cut(s)	618
FaeI	CATG	1 cut(s)	794
FaiI	YATR	7 cut(s)	423, 441, 483, 572, 717, 719, 792
FaqI	GGGAC	1 cut(s)	370
FatI	CATG	1 cut(s)	790
FauI	CCCGC	3 cut(s)	128, 192, 719
FauNDI	CATATG	1 cut(s)	717
FblI	GTMKAC	2 cut(s)	30, 227
Fnu4HI	GCNGC	6 cut(s)	54, 81, 84, 188, 344, 537
FokI	GGATG	3 cut(s)	252, 756, 820
Fsp4HI	GCNGC	6 cut(s)	54, 81, 84, 188, 344, 537
FspBI	CTAG	3 cut(s)	44, 426, 848
GlaI	GCGC	3 cut(s)	692, 694, 751
GluI	GCNGC	6 cut(s)	54, 81, 84, 188, 344, 537
GsuI	CTGGAG	1 cut(s)	321
HaeIII	GGCC	4 cut(s)	5, 65, 284, 821
HapII	CCGG	4 cut(s)	389, 492, 679, 760
HgaI	GACGC	3 cut(s)	59, 361, 379
HhaI	GCGC	3 cut(s)	693, 695, 752
Hin1I	GRCGYC	3 cut(s)	51, 353, 371
Hin1II	CATG	1 cut(s)	794
Hin6I	GCGC	3 cut(s)	691, 693, 750
HinP1I	GCGC	3 cut(s)	691, 693, 750
HincII	GTYRAC	2 cut(s)	31, 228
HindII	GTYRAC	2 cut(s)	31, 228
HinfI	GANTC	2 cut(s)	74, 206
HpaII	CCGG	4 cut(s)	389, 492, 679, 760
Hpy166II	GTNNAC	3 cut(s)	31, 228, 307
Hpy188I	TCNGA	6 cut(s)	202, 335, 416, 531, 739, 801
Hpy188III	TCNNGA	3 cut(s)	178, 300, 791
Hpy8I	GTNNAC	3 cut(s)	31, 228, 307
Hpy99I	CGWCG	9 cut(s)	32, 35, 53, 206, 226, 229, 248, 355, 373
HpyAV	CCTTC	3 cut(s)	165, 205, 513
HpyCH4IV	ACGT	1 cut(s)	399
HpyCH4V	TGCA	3 cut(s)	343, 481, 721
HpyF10VI	GCNNNNNNNGC	6 cut(s)	62, 352, 361, 370, 435, 542
HpyF3I	CTNAG	2 cut(s)	208, 736
HpySE526I	ACGT	1 cut(s)	399
Hsp92I	GRCGYC	3 cut(s)	51, 353, 371
Hsp92II	CATG	1 cut(s)	794
HspAI	GCGC	3 cut(s)	691, 693, 750
KspI	CCGCGG	1 cut(s)	188
Kzo9I	GATC	1 cut(s)	645
LguI	GCTCTTC	1 cut(s)	179
LmnI	GCTCC	2 cut(s)	195, 872
Lsp1109I	GCAGC	1 cut(s)	355
LweI	GCATC	2 cut(s)	420, 842
MaeI	CTAG	3 cut(s)	44, 426, 848
MaeII	ACGT	1 cut(s)	399
MaeIII	GTNAC	1 cut(s)	755
MalI	GATC	1 cut(s)	647
MboI	GATC	1 cut(s)	645
MboII	GAAGA	5 cut(s)	166, 285, 288, 625, 781
MhlI	GDGCHC	2 cut(s)	585, 715
MlsI	TGGCCA	1 cut(s)	284
MluCI	AATT	6 cut(s)	148, 418, 698, 773, 852, 881
MluNI	TGGCCA	1 cut(s)	284
MlyI	GAGTC	2 cut(s)	68, 200
MmeI	TCCRAC	2 cut(s)	225, 587
Mox20I	TGGCCA	1 cut(s)	284
MroXI	GAANNNNTTC	3 cut(s)	173, 292, 773
MscI	TGGCCA	1 cut(s)	284
MseI	TTAA	1 cut(s)	892
Msp20I	TGGCCA	1 cut(s)	284
MspA1I	CMGCKG	1 cut(s)	187
MspI	CCGG	4 cut(s)	389, 492, 679, 760
MspR9I	CCNGG	6 cut(s)	389, 408, 493, 817, 839, 870
Mva1269I	GAATGC	1 cut(s)	538
MvaI	CCWGG	4 cut(s)	408, 817, 839, 870
MvnI	CGCG	3 cut(s)	187, 693, 752
MwoI	GCNNNNNNNGC	6 cut(s)	62, 352, 361, 370, 435, 542
NciI	CCSGG	2 cut(s)	389, 493
NdeI	CATATG	1 cut(s)	717
NdeII	GATC	1 cut(s)	645
NheI	GCTAGC	1 cut(s)	425
NlaIII	CATG	1 cut(s)	794
NlaIV	GGNNCC	3 cut(s)	191, 500, 584
NmeAIII	GCCGAG	2 cut(s)	236, 297
NmuCI	GTSAC	1 cut(s)	755
PagI	TCATGA	1 cut(s)	790
PauI	GCGCGC	1 cut(s)	691
PciSI	GCTCTTC	1 cut(s)	179
PcsI	WCGNNNNNNNCGW	1 cut(s)	164
PctI	GAATGC	1 cut(s)	538
PdmI	GAANNNNTTC	3 cut(s)	173, 292, 773
PkrI	GCNGC	6 cut(s)	55, 82, 85, 189, 345, 538
PleI	GAGTC	2 cut(s)	68, 200
PmaCI	CACGTG	1 cut(s)	400
PmlI	CACGTG	1 cut(s)	400
PpsI	GAGTC	2 cut(s)	68, 200
Ppu21I	YACGTR	1 cut(s)	400
PpuMI	RGGWCCY	3 cut(s)	40, 250, 841
PshAI	GACNNNNGTC	1 cut(s)	315
Psp5II	RGGWCCY	3 cut(s)	40, 250, 841
Psp6I	CCWGG	4 cut(s)	406, 815, 837, 868
PspCI	CACGTG	1 cut(s)	400
PspGI	CCWGG	4 cut(s)	406, 815, 837, 868
PspN4I	GGNNCC	3 cut(s)	191, 500, 584
PspPI	GGNCC	5 cut(s)	40, 63, 250, 819, 841
PspPPI	RGGWCCY	3 cut(s)	40, 250, 841
PstNI	CAGNNNCTG	1 cut(s)	844
PteI	GCGCGC	1 cut(s)	691
RsaI	GTAC	3 cut(s)	107, 805, 863
RsaNI	GTAC	3 cut(s)	106, 804, 862
SacII	CCGCGG	1 cut(s)	188
SalI	GTCGAC	2 cut(s)	29, 226
SapI	GCTCTTC	1 cut(s)	179
SaqAI	TTAA	1 cut(s)	892
SatI	GCNGC	6 cut(s)	54, 81, 84, 188, 344, 537
Sau3AI	GATC	1 cut(s)	645
Sau96I	GGNCC	5 cut(s)	40, 63, 250, 819, 841
SchI	GAGTC	2 cut(s)	68, 200
ScrFI	CCNGG	6 cut(s)	389, 408, 493, 817, 839, 870
SduI	GDGCHC	2 cut(s)	585, 715
SfaNI	GCATC	2 cut(s)	420, 842
Sfr303I	CCGCGG	1 cut(s)	188
SgrBI	CCGCGG	1 cut(s)	188
SgrDI	CGTCGACG	1 cut(s)	29
SinI	GGWCC	3 cut(s)	40, 250, 841
Sse9I	AATT	6 cut(s)	148, 418, 698, 773, 852, 881
SspMI	CTAG	3 cut(s)	44, 426, 848
StyD4I	CCNGG	6 cut(s)	387, 406, 491, 815, 837, 868
TaiI	ACGT	1 cut(s)	402
TaqI	TCGA	4 cut(s)	30, 72, 227, 246
TaqII	GACCGA	1 cut(s)	245
TasI	AATT	6 cut(s)	148, 418, 698, 773, 852, 881
TatI	WGTACW	2 cut(s)	105, 803
TauI	GCSGC	5 cut(s)	56, 83, 86, 190, 539
Tru1I	TTAA	1 cut(s)	892
Tru9I	TTAA	1 cut(s)	892
TseFI	GTSAC	1 cut(s)	755
TseI	GCWGC	1 cut(s)	343
Tsp45I	GTSAC	1 cut(s)	755
TspDTI	ATGAA	1 cut(s)	580
VpaK11BI	GGWCC	3 cut(s)	40, 250, 841
XapI	RAATTY	2 cut(s)	698, 773
XmiI	GTMKAC	2 cut(s)	30, 227
XmnI	GAANNNNTTC	3 cut(s)	173, 292, 773
XspI	CTAG	3 cut(s)	44, 426, 848

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.