Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0007210

Physical Location & Seq

Genomic Coordinates Reverse (-)

36940687 .. 36943858

Gene Structure 3172 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024552

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGGACGACAAAGACCTAGACGACGCGGCTTTGTGGGCCGTGATCGACTCCGCCGCCGCCTCCCACTCCTCCAAATCCAAATTCCAATCCCGCCAACCACTAGCGATCCAATACCAGCGGCCGTCTCCGCCGATCTCAAACCCTTCGCCGCCGCAGAAGCTCTTCAAGACCGCTCGGATCTCCTACTCCGGCGAATCCGACTCCAAATCGGAGGGCGAGGTCGTCGAGGAGCCTTGGGCTTTCCACCCGCCGAGGAAGATCGCCAGGTCAGCAAACGACGGCAATTCTCTCGCCGTAGTCAGAAATGTGCCGCGCACGCCTACCACGCCGGTGTACGCTTCGCCGGAGTCGCATTTGTCGCCGGGAATCGGGAGGTTTAGTAGTCCCGTTAGCTATCCGCAGAGAGAAGAGAGGGATAATAATCCAGTGCAGACGGTGCAGCACAGCTTGTCTGGGATGTTTCCTTCGGTTTCTTTGTTTAAGGAGTATCAAGATGCAGCCATGGCGATCTTGGAGAAAACTGATTACACTAAGATTCATGGGAGTACTTATATCAAAAAGTCAGGTAAAGGCCTTAGAGGGAGGTTCTGGTTGTTGTTGCGAGGTGGAATGGGATGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

207

Amino Acids

22.71

Weight (kDa)

9.3

Isoelectric Point (pI)

50.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007210)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09430 AT3G09430 AT3G09430
fragaria_vesca	FvH4_6g13970 FvH4_6g13970 FvH4_6g13970 FvH4_6g13970
malus_domestica	MD02G1131100.v1.1 MD04G1127200.v1.1 MD05G1218700.v1.1 MD12G1140400.v1.1 MD15G1437500.v1.1 MD16G1182100.v1.1
prunus_persica	Prupe.6G253700_v2.0.a1 Prupe.6G253700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0466791
rosa_laevigata	RLG00000024552
rosa_roxburghii	Rroxscaffold_6G00414140
rosa_rugosa	Rorug03G0083800 Rorug03G0083800
rosa_samantha	Rh3AG131200 Rh3BG152300 Rh3CG152400 Rh3DG153400
rosa_wichuraiana	Rw3G012400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	173
AccII	CGCG	2 cut(s)	26, 313
AclWI	GGATC	2 cut(s)	100, 185
AcoI	YGGCCR	1 cut(s)	119
AcsI	RAATTY	1 cut(s)	80
AfaI	GTAC	2 cut(s)	335, 547
AfiI	CCNNNNNNNGG	1 cut(s)	368
AgsI	TTSAA	1 cut(s)	166
AjnI	CCWGG	1 cut(s)	263
AjuI	GAANNNNNNNTTGG	2 cut(s)	65, 97
AleI	CACNNNNGTG	1 cut(s)	329
AluBI	AGCT	3 cut(s)	160, 393, 447
AluI	AGCT	3 cut(s)	160, 393, 447
Alw26I	GTCTC	1 cut(s)	129
AlwI	GGATC	2 cut(s)	100, 185
AoxI	GGCC	3 cut(s)	36, 119, 571
ApeKI	GCWGC	2 cut(s)	439, 497
ApoI	RAATTY	1 cut(s)	80
Asp700I	GAANNNNTTC	1 cut(s)	161
AspLEI	GCGC	1 cut(s)	315
AspS9I	GGNCC	1 cut(s)	36
AsuC2I	CCSGG	1 cut(s)	363
BbvI	GCAGC	2 cut(s)	451, 509
BceAI	ACGGC	4 cut(s)	23, 106, 278, 295
BcgI	CGANNNNNNTGC	2 cut(s)	271, 305
BciT130I	CCWGG	1 cut(s)	265
BcnI	CCSGG	1 cut(s)	363
BcoDI	GTCTC	1 cut(s)	129
BfaI	CTAG	3 cut(s)	17, 101, 619
BisI	GCNGC	9 cut(s)	27, 54, 57, 119, 149, 152, 311, 440, 498
BlsI	GCNGC	9 cut(s)	28, 55, 58, 120, 150, 153, 312, 441, 499
BmcAI	AGTACT	1 cut(s)	547
Bme1390I	CCNGG	2 cut(s)	265, 363
BmgT120I	GGNCC	1 cut(s)	36
BmiI	GGNNCC	1 cut(s)	231
BmrFI	CCNGG	2 cut(s)	265, 363
BmsI	GCATC	2 cut(s)	484, 605
BpuMI	CCSGG	1 cut(s)	363
BsaBI	GATNNNNATC	1 cut(s)	420
BsaJI	CCNNGG	3 cut(s)	233, 251, 501
BsaXI	ACNNNNNCTCC	2 cut(s)	364, 394
Bsc4I	CCNNNNNNNGG	1 cut(s)	368
Bse118I	RCCGGY	1 cut(s)	328
Bse1I	ACTGG	1 cut(s)	425
Bse8I	GATNNNNATC	1 cut(s)	420
BseBI	CCWGG	1 cut(s)	265
BseDI	CCNNGG	3 cut(s)	233, 251, 501
BseGI	GGATG	2 cut(s)	462, 620
BseJI	GATNNNNATC	1 cut(s)	420
BseLI	CCNNNNNNNGG	1 cut(s)	368
BseNI	ACTGG	1 cut(s)	425
BseRI	GAGGAG	2 cut(s)	58, 242
BseX3I	CGGCCG	1 cut(s)	119
BseXI	GCAGC	2 cut(s)	451, 509
BsgI	GTGCAG	2 cut(s)	449, 458
Bsh1236I	CGCG	2 cut(s)	26, 313
Bsh1285I	CGRYCG	1 cut(s)	122
BshFI	GGCC	3 cut(s)	38, 121, 573
BsiEI	CGRYCG	1 cut(s)	122
BsiSI	CCGG	4 cut(s)	189, 329, 344, 362
BslFI	GGGAC	1 cut(s)	369
BslI	CCNNNNNNNGG	1 cut(s)	368
BsmAI	GTCTC	1 cut(s)	129
BsmBI	CGTCTC	1 cut(s)	129
BsmFI	GGGAC	1 cut(s)	369
BsnI	GGCC	3 cut(s)	38, 121, 573
Bsp143I	GATC	6 cut(s)	42, 105, 132, 177, 258, 507
Bsp19I	CCATGG	1 cut(s)	501
BspANI	GGCC	3 cut(s)	38, 121, 573
BspFNI	CGCG	2 cut(s)	26, 313
BspLI	GGNNCC	1 cut(s)	231
BspPI	GGATC	2 cut(s)	100, 185
BspQI	GCTCTTC	1 cut(s)	167
BsrBI	CCGCTC	1 cut(s)	173
BsrFI	RCCGGY	1 cut(s)	328
BsrI	ACTGG	1 cut(s)	425
BssAI	RCCGGY	1 cut(s)	328
BssECI	CCNNGG	3 cut(s)	233, 251, 501
BssMI	GATC	6 cut(s)	42, 105, 132, 177, 258, 507
BssT1I	CCWWGG	2 cut(s)	233, 501
Bst2UI	CCWGG	1 cut(s)	265
Bst4CI	ACNGT	1 cut(s)	436
Bst6I	CTCTTC	2 cut(s)	167, 402
BstAPI	GCANNNNNTGC	1 cut(s)	436
BstC8I	GCNNGC	1 cut(s)	317
BstDEI	CTNAG	2 cut(s)	531, 575
BstDSI	CCRYGG	1 cut(s)	501
BstF5I	GGATG	2 cut(s)	462, 620
BstFNI	CGCG	2 cut(s)	26, 313
BstHHI	GCGC	1 cut(s)	315
BstKTI	GATC	6 cut(s)	45, 108, 135, 180, 261, 510
BstMAI	GTCTC	1 cut(s)	129
BstMBI	GATC	6 cut(s)	42, 105, 132, 177, 258, 507
BstMCI	CGRYCG	1 cut(s)	122
BstNI	CCWGG	1 cut(s)	265
BstSCI	CCNGG	2 cut(s)	263, 361
BstUI	CGCG	2 cut(s)	26, 313
BstV1I	GCAGC	2 cut(s)	451, 509
BstX2I	RGATCY	1 cut(s)	177
BstYI	RGATCY	1 cut(s)	177
BstZI	CGGCCG	1 cut(s)	119
BsuRI	GGCC	3 cut(s)	38, 121, 573
BtgI	CCRYGG	1 cut(s)	501
BtsCI	GGATG	2 cut(s)	462, 620
BtsIMutI	CAGTG	1 cut(s)	432
Cac8I	GCNNGC	1 cut(s)	317
CfoI	GCGC	1 cut(s)	315
Cfr10I	RCCGGY	1 cut(s)	328
Cfr13I	GGNCC	1 cut(s)	36
CseI	GACGC	1 cut(s)	32
Csp6I	GTAC	2 cut(s)	334, 546
CviAII	CATG	2 cut(s)	502, 539
CviQI	GTAC	2 cut(s)	334, 546
DdeI	CTNAG	2 cut(s)	531, 575
DpnI	GATC	6 cut(s)	44, 107, 134, 179, 260, 509
DpnII	GATC	6 cut(s)	42, 105, 132, 177, 258, 507
EaeI	YGGCCR	1 cut(s)	119
EagI	CGGCCG	1 cut(s)	119
Eam1104I	CTCTTC	2 cut(s)	167, 402
EarI	CTCTTC	2 cut(s)	167, 402
EciI	GGCGGA	2 cut(s)	40, 117
EclXI	CGGCCG	1 cut(s)	119
Eco130I	CCWWGG	2 cut(s)	233, 501
Eco147I	AGGCCT	1 cut(s)	573
Eco52I	CGGCCG	1 cut(s)	119
EcoRII	CCWGG	1 cut(s)	263
EcoT14I	CCWWGG	2 cut(s)	233, 501
ErhI	CCWWGG	2 cut(s)	233, 501
Esp3I	CGTCTC	1 cut(s)	129
FaeI	CATG	2 cut(s)	505, 542
FaiI	YATR	3 cut(s)	503, 540, 552
FaqI	GGGAC	1 cut(s)	369
FatI	CATG	2 cut(s)	501, 538
FauI	CCCGC	2 cut(s)	98, 255
Fnu4HI	GCNGC	9 cut(s)	27, 54, 57, 119, 149, 152, 311, 440, 498
FokI	GGATG	1 cut(s)	469
Fsp4HI	GCNGC	9 cut(s)	27, 54, 57, 119, 149, 152, 311, 440, 498
FspBI	CTAG	3 cut(s)	17, 101, 619
GlaI	GCGC	1 cut(s)	314
GluI	GCNGC	9 cut(s)	27, 54, 57, 119, 149, 152, 311, 440, 498
HaeIII	GGCC	3 cut(s)	38, 121, 573
HapII	CCGG	4 cut(s)	189, 329, 344, 362
HgaI	GACGC	1 cut(s)	32
HhaI	GCGC	1 cut(s)	315
Hin1II	CATG	2 cut(s)	505, 542
Hin6I	GCGC	1 cut(s)	313
HinP1I	GCGC	1 cut(s)	313
HinfI	GANTC	6 cut(s)	47, 194, 200, 347, 366, 535
HpaII	CCGG	4 cut(s)	189, 329, 344, 362
Hpy166II	GTNNAC	1 cut(s)	334
Hpy188I	TCNGA	4 cut(s)	177, 199, 211, 302
Hpy188III	TCNNGA	3 cut(s)	166, 370, 491
Hpy8I	GTNNAC	1 cut(s)	334
Hpy99I	CGWCG	3 cut(s)	26, 227, 281
HpyAV	CCTTC	2 cut(s)	153, 474
HpyCH4III	ACNGT	1 cut(s)	436
HpyCH4V	TGCA	3 cut(s)	430, 439, 497
HpyF3I	CTNAG	2 cut(s)	531, 575
Hsp92II	CATG	2 cut(s)	505, 542
HspAI	GCGC	1 cut(s)	313
Kzo9I	GATC	6 cut(s)	42, 105, 132, 177, 258, 507
LguI	GCTCTTC	1 cut(s)	167
LmnI	GCTCC	1 cut(s)	229
Lsp1109I	GCAGC	2 cut(s)	451, 509
LweI	GCATC	2 cut(s)	484, 605
MaeI	CTAG	3 cut(s)	17, 101, 619
MalI	GATC	6 cut(s)	44, 107, 134, 179, 260, 509
MbiI	CCGCTC	1 cut(s)	173
MboI	GATC	6 cut(s)	42, 105, 132, 177, 258, 507
MboII	GAAGA	3 cut(s)	154, 268, 419
MflI	RGATCY	1 cut(s)	177
MluCI	AATT	2 cut(s)	80, 283
MlyI	GAGTC	3 cut(s)	41, 194, 356
MmeI	TCCRAC	1 cut(s)	222
MroXI	GAANNNNTTC	1 cut(s)	161
MseI	TTAA	1 cut(s)	480
MslI	CAYNNNNRTG	1 cut(s)	329
MspA1I	CMGCKG	1 cut(s)	118
MspI	CCGG	4 cut(s)	189, 329, 344, 362
MspR9I	CCNGG	2 cut(s)	265, 363
MvaI	CCWGG	1 cut(s)	265
MvnI	CGCG	2 cut(s)	26, 313
NciI	CCSGG	1 cut(s)	363
NcoI	CCATGG	1 cut(s)	501
NdeII	GATC	6 cut(s)	42, 105, 132, 177, 258, 507
NlaIII	CATG	2 cut(s)	505, 542
NlaIV	GGNNCC	1 cut(s)	231
NmeAIII	GCCGAG	1 cut(s)	276
OliI	CACNNNNGTG	1 cut(s)	329
PceI	AGGCCT	1 cut(s)	573
PciSI	GCTCTTC	1 cut(s)	167
PdmI	GAANNNNTTC	1 cut(s)	161
PfeI	GAWTC	3 cut(s)	194, 366, 535
PkrI	GCNGC	9 cut(s)	28, 55, 58, 120, 150, 153, 312, 441, 499
PleI	GAGTC	3 cut(s)	41, 194, 355
PpsI	GAGTC	3 cut(s)	41, 194, 355
Psp6I	CCWGG	1 cut(s)	263
PspGI	CCWGG	1 cut(s)	263
PspN4I	GGNNCC	1 cut(s)	231
PspPI	GGNCC	1 cut(s)	36
PsuI	RGATCY	1 cut(s)	177
RsaI	GTAC	2 cut(s)	335, 547
RsaNI	GTAC	2 cut(s)	334, 546
RseI	CAYNNNNRTG	1 cut(s)	329
SapI	GCTCTTC	1 cut(s)	167
SaqAI	TTAA	1 cut(s)	480
SatI	GCNGC	9 cut(s)	27, 54, 57, 119, 149, 152, 311, 440, 498
Sau3AI	GATC	6 cut(s)	42, 105, 132, 177, 258, 507
Sau96I	GGNCC	1 cut(s)	36
ScaI	AGTACT	1 cut(s)	547
SchI	GAGTC	3 cut(s)	41, 194, 356
ScrFI	CCNGG	2 cut(s)	265, 363
SfaNI	GCATC	2 cut(s)	484, 605
SgrAI	CRCCGGYG	1 cut(s)	328
SmiMI	CAYNNNNRTG	1 cut(s)	329
Sse9I	AATT	2 cut(s)	80, 283
SseBI	AGGCCT	1 cut(s)	573
SspMI	CTAG	3 cut(s)	17, 101, 619
StuI	AGGCCT	1 cut(s)	573
StyD4I	CCNGG	2 cut(s)	263, 361
StyI	CCWWGG	2 cut(s)	233, 501
TaaI	ACNGT	1 cut(s)	436
TaqI	TCGA	2 cut(s)	45, 225
TasI	AATT	2 cut(s)	80, 283
TatI	WGTACW	1 cut(s)	545
TauI	GCSGC	7 cut(s)	29, 56, 59, 121, 151, 154, 313
TfiI	GAWTC	3 cut(s)	194, 366, 535
Tru1I	TTAA	1 cut(s)	480
Tru9I	TTAA	1 cut(s)	480
TscAI	CASTG	1 cut(s)	432
TseI	GCWGC	2 cut(s)	439, 497
TspDTI	ATGAA	1 cut(s)	527
TspRI	CASTG	1 cut(s)	432
XapI	RAATTY	1 cut(s)	80
XcmI	CCANNNNNNNNNTGG	1 cut(s)	508
XmnI	GAANNNNTTC	1 cut(s)	161
XspI	CTAG	3 cut(s)	17, 101, 619
ZrmI	AGTACT	1 cut(s)	547

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.