Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0007210

Physical Location & Seq

Genomic Coordinates Reverse (-)

21835266 .. 21838079

Gene Structure 2814 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1140400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGGCCTCCCCGACCTTCCATCCCGTCGTGGACGACAATGACCTAGAAGACGCCGCTCTGTGGGCCGTCATTGACTCCGCCGCCGCCTCCCACTCCTCCTCCAAATCCAAACCCCAACCCCGCAGGCCCCTCGCTATCAAATACCCAAACTACCCTCGCTGCTCCCCAGTCTCAAACCCTTATCCTCCGCCCAAGCTGTTCAAGACCGCCGCAAGGCTCGACTCCTCCGTCGACTCCGACTCCAAGTCAACCGCATCAGAGGGCGAGGTCGTCGAGGAACCCTGGGCGTTTCACCCCCCGAGGAAGATCGCGAGGTCCTCTTTTTCCGAAGTCAACGACACGAGTCCTCTGGTCGTAGTTCGAAATGTGCAGCGCACGACGCCTACCACTCCTACGACTCCGTTTTATTCGTCGCCGGAAACGCACTTGTCGCCGGGGATCGGGAATTTTGCGAGCCCTGTGAACTATGCGCAGAGAGGGGAGAGGGATAACAGCTCTGTAGCTGTTCATAGCATGTCCGGGAGGTTCCCTTCGGTCTCTCTGTTTAAGGAGTATCAGAATGCAGCTATGGCGATTTTGGAGAAAACAGATTACACCATGATTTCTGGGCATCCTTTCATTAAAAAGTCAGGTTGGAGGAAGATATCATTTTACTTCAATCTCTCTTTTGAGATCAAAGACAAGACCATTGAATTTGATGAGAATCGAAATGTTCTCCGGGCCGAATTTGTAGTTCGGGCACACATGCAGGGCGGTAGGTTCTCAGATGGATGGGGTGCATGCGATCGGCGTGAGAAGAGATTCAATAAACCAAATCATGACATTCCGAGCACAGCGGAGACCAGGGCTAAAAGCAAAGCATCCCAGGATCTGCTAGGAATCGGAGAGTACCGACCAGGTGCAAGTCAGTTCAACCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

307

Amino Acids

34.08

Weight (kDa)

9.08

Isoelectric Point (pI)

50.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007210)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09430 AT3G09430 AT3G09430
fragaria_vesca	FvH4_6g13970 FvH4_6g13970 FvH4_6g13970 FvH4_6g13970
malus_domestica	MD02G1131100.v1.1 MD04G1127200.v1.1 MD05G1218700.v1.1 MD12G1140400.v1.1 MD15G1437500.v1.1 MD16G1182100.v1.1
prunus_persica	Prupe.6G253700_v2.0.a1 Prupe.6G253700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0466791
rosa_laevigata	RLG00000024552
rosa_roxburghii	Rroxscaffold_6G00414140
rosa_rugosa	Rorug03G0083800 Rorug03G0083800
rosa_samantha	Rh3AG131200 Rh3BG152300 Rh3CG152400 Rh3DG153400
rosa_wichuraiana	Rw3G012400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	227
Acc16I	TGCGCA	1 cut(s)	471
AccBSI	CCGCTC	1 cut(s)	56
AccI	GTMKAC	1 cut(s)	231
AccII	CGCG	1 cut(s)	311
AclWI	GGATC	2 cut(s)	446, 876
AcsI	RAATTY	3 cut(s)	445, 692, 725
AcyI	GRCGYC	2 cut(s)	51, 380
AfaI	GTAC	1 cut(s)	890
AfiI	CCNNNNNNNGG	3 cut(s)	60, 213, 440
AgsI	TTSAA	5 cut(s)	202, 658, 692, 805, 913
AhdI	GACNNNNNGTC	1 cut(s)	244
AjnI	CCWGG	4 cut(s)	281, 842, 864, 895
AluBI	AGCT	4 cut(s)	196, 495, 503, 566
AluI	AGCT	4 cut(s)	196, 495, 503, 566
Alw21I	GWGCWC	1 cut(s)	833
Alw26I	GTCTC	3 cut(s)	175, 541, 833
AlwI	GGATC	2 cut(s)	446, 876
AlwNI	CAGNNNCTG	1 cut(s)	871
Ama87I	CYCGRG	1 cut(s)	298
AoxI	GGCC	4 cut(s)	3, 63, 125, 720
ApeKI	GCWGC	3 cut(s)	159, 370, 563
ApoI	RAATTY	3 cut(s)	445, 692, 725
Asp700I	GAANNNNTTC	1 cut(s)	800
AspLEI	GCGC	2 cut(s)	375, 472
AspS9I	GGNCC	4 cut(s)	63, 126, 315, 720
AsuC2I	CCSGG	3 cut(s)	435, 520, 719
AsuHPI	GGTGA	1 cut(s)	284
AsuII	TTCGAA	1 cut(s)	361
AvaI	CYCGRG	1 cut(s)	298
AvaII	GGWCC	1 cut(s)	315
BaeGI	GKGCMC	1 cut(s)	742
BanII	GRGCYC	1 cut(s)	458
BauI	CACGAG	1 cut(s)	340
BbsI	GAAGAC	1 cut(s)	54
Bbv12I	GWGCWC	1 cut(s)	833
BbvI	GCAGC	3 cut(s)	146, 382, 575
BccI	CCATC	3 cut(s)	27, 761, 765
BceAI	ACGGC	1 cut(s)	50
BcgI	CGANNNNNNTGC	2 cut(s)	112, 146
BciT130I	CCWGG	4 cut(s)	283, 844, 866, 897
BcnI	CCSGG	3 cut(s)	435, 520, 719
BcoDI	GTCTC	3 cut(s)	175, 541, 833
BfaI	CTAG	2 cut(s)	44, 875
BfmI	CTRYAG	1 cut(s)	498
BisI	GCNGC	7 cut(s)	54, 81, 84, 160, 210, 371, 564
BlsI	GCNGC	7 cut(s)	55, 82, 85, 161, 211, 372, 565
Bme1390I	CCNGG	7 cut(s)	283, 435, 520, 719, 844, 866, 897
Bme18I	GGWCC	1 cut(s)	315
BmeRI	GACNNNNNGTC	1 cut(s)	244
BmeT110I	CYCGRG	1 cut(s)	298
BmgT120I	GGNCC	4 cut(s)	63, 126, 315, 720
BmiI	GGNNCC	3 cut(s)	128, 279, 527
BmrFI	CCNGG	7 cut(s)	283, 435, 520, 719, 844, 866, 897
BmrI	ACTGGG	1 cut(s)	161
BmsI	GCATC	3 cut(s)	263, 619, 869
BmuI	ACTGGG	1 cut(s)	161
BoxI	GACNNNNGTC	1 cut(s)	342
BpiI	GAAGAC	1 cut(s)	54
Bpu14I	TTCGAA	1 cut(s)	361
BpuMI	CCSGG	3 cut(s)	435, 520, 719
BsaBI	GATNNNNATC	1 cut(s)	702
BsaHI	GRCGYC	2 cut(s)	51, 380
BsaI	GGTCTC	2 cut(s)	541, 833
BsaJI	CCNNGG	6 cut(s)	281, 282, 299, 434, 843, 864
BsaXI	ACNNNNNCTCC	4 cut(s)	83, 113, 224, 254
Bsc4I	CCNNNNNNNGG	3 cut(s)	60, 213, 440
Bse1I	ACTGG	1 cut(s)	167
Bse8I	GATNNNNATC	1 cut(s)	702
BseBI	CCWGG	4 cut(s)	283, 844, 866, 897
BseDI	CCNNGG	6 cut(s)	281, 282, 299, 434, 843, 864
BseGI	GGATG	4 cut(s)	19, 610, 776, 860
BseJI	GATNNNNATC	1 cut(s)	702
BseLI	CCNNNNNNNGG	3 cut(s)	60, 213, 440
BseMII	CTCAG	1 cut(s)	777
BseNI	ACTGG	1 cut(s)	167
BseRI	GAGGAG	3 cut(s)	85, 88, 214
BseSI	GKGCMC	1 cut(s)	742
BseXI	GCAGC	3 cut(s)	146, 382, 575
BsgI	GTGCAG	1 cut(s)	389
Bsh1236I	CGCG	1 cut(s)	311
Bsh1285I	CGRYCG	1 cut(s)	787
BshFI	GGCC	4 cut(s)	5, 65, 127, 722
BsiEI	CGRYCG	1 cut(s)	787
BsiHKAI	GWGCWC	1 cut(s)	833
BsiHKCI	CYCGRG	1 cut(s)	298
BsiSI	CCGG	4 cut(s)	416, 434, 519, 718
BslI	CCNNNNNNNGG	3 cut(s)	60, 213, 440
BsmAI	GTCTC	3 cut(s)	175, 541, 833
BsmI	GAATGC	1 cut(s)	565
BsnI	GGCC	4 cut(s)	5, 65, 127, 722
Bso31I	GGTCTC	2 cut(s)	541, 833
BsoBI	CYCGRG	1 cut(s)	298
Bsp119I	TTCGAA	1 cut(s)	361
Bsp1286I	GDGCHC	3 cut(s)	458, 742, 833
Bsp143I	GATC	5 cut(s)	306, 438, 672, 784, 868
Bsp68I	TCGCGA	1 cut(s)	311
BspANI	GGCC	4 cut(s)	5, 65, 127, 722
BspCNI	CTCAG	1 cut(s)	776
BspFNI	CGCG	1 cut(s)	311
BspHI	TCATGA	1 cut(s)	817
BspLI	GGNNCC	3 cut(s)	128, 279, 527
BspPI	GGATC	2 cut(s)	446, 876
BspT104I	TTCGAA	1 cut(s)	361
BspTNI	GGTCTC	2 cut(s)	541, 833
BsrBI	CCGCTC	1 cut(s)	56
BsrI	ACTGG	1 cut(s)	167
BssECI	CCNNGG	6 cut(s)	281, 282, 299, 434, 843, 864
BssMI	GATC	5 cut(s)	306, 438, 672, 784, 868
BssNI	GRCGYC	2 cut(s)	51, 380
BssSI	CACGAG	1 cut(s)	340
Bst2BI	CACGAG	1 cut(s)	340
Bst2UI	CCWGG	4 cut(s)	283, 844, 866, 897
Bst6I	CTCTTC	1 cut(s)	791
BstACI	GRCGYC	2 cut(s)	51, 380
BstBI	TTCGAA	1 cut(s)	361
BstC8I	GCNNGC	3 cut(s)	125, 454, 781
BstDEI	CTNAG	1 cut(s)	763
BstF5I	GGATG	4 cut(s)	19, 610, 776, 860
BstFNI	CGCG	1 cut(s)	311
BstHHI	GCGC	2 cut(s)	375, 472
BstKTI	GATC	5 cut(s)	309, 441, 675, 787, 871
BstMAI	GTCTC	3 cut(s)	175, 541, 833
BstMBI	GATC	5 cut(s)	306, 438, 672, 784, 868
BstMCI	CGRYCG	1 cut(s)	787
BstMWI	GCNNNNNNNGC	5 cut(s)	62, 379, 421, 430, 569
BstNI	CCWGG	4 cut(s)	283, 844, 866, 897
BstNSI	RCATGY	3 cut(s)	517, 748, 783
BstPAI	GACNNNNGTC	1 cut(s)	342
BstSCI	CCNGG	7 cut(s)	281, 433, 518, 717, 842, 864, 895
BstSFI	CTRYAG	1 cut(s)	498
BstSLI	GKGCMC	1 cut(s)	742
BstUI	CGCG	1 cut(s)	311
BstV1I	GCAGC	3 cut(s)	146, 382, 575
BstV2I	GAAGAC	1 cut(s)	54
BstX2I	RGATCY	1 cut(s)	868
BstYI	RGATCY	1 cut(s)	868
BsuRI	GGCC	4 cut(s)	5, 65, 127, 722
BtsCI	GGATG	4 cut(s)	19, 610, 776, 860
BtuMI	TCGCGA	1 cut(s)	311
Cac8I	GCNNGC	3 cut(s)	125, 454, 781
CaiI	CAGNNNCTG	1 cut(s)	871
CciI	TCATGA	1 cut(s)	817
CfoI	GCGC	2 cut(s)	375, 472
Cfr13I	GGNCC	4 cut(s)	63, 126, 315, 720
CseI	GACGC	2 cut(s)	59, 388
CsiI	ACCWGGT	1 cut(s)	895
Csp6I	GTAC	1 cut(s)	889
CviAII	CATG	5 cut(s)	514, 598, 745, 780, 818
CviQI	GTAC	1 cut(s)	889
DdeI	CTNAG	1 cut(s)	763
DpnI	GATC	5 cut(s)	308, 440, 674, 786, 870
DpnII	GATC	5 cut(s)	306, 438, 672, 784, 868
DrdI	GACNNNNNNGTC	1 cut(s)	227
DriI	GACNNNNNGTC	1 cut(s)	244
DseDI	GACNNNNNNGTC	1 cut(s)	227
Eam1104I	CTCTTC	1 cut(s)	791
Eam1105I	GACNNNNNGTC	1 cut(s)	244
EarI	CTCTTC	1 cut(s)	791
EciI	GGCGGA	2 cut(s)	67, 177
Eco24I	GRGCYC	1 cut(s)	458
Eco31I	GGTCTC	2 cut(s)	541, 833
Eco32I	GATATC	1 cut(s)	645
Eco47I	GGWCC	1 cut(s)	315
Eco88I	CYCGRG	1 cut(s)	298
EcoO109I	RGGNCCY	2 cut(s)	126, 315
EcoRII	CCWGG	4 cut(s)	281, 842, 864, 895
EcoRV	GATATC	1 cut(s)	645
EcoT38I	GRGCYC	1 cut(s)	458
FaeI	CATG	5 cut(s)	517, 601, 748, 783, 821
FaiI	YATR	8 cut(s)	468, 510, 515, 569, 599, 746, 781, 819
FatI	CATG	5 cut(s)	513, 597, 744, 779, 817
FauI	CCCGC	1 cut(s)	128
FblI	GTMKAC	1 cut(s)	231
Fnu4HI	GCNGC	7 cut(s)	54, 81, 84, 160, 210, 371, 564
FokI	GGATG	4 cut(s)	6, 597, 783, 847
FriOI	GRGCYC	1 cut(s)	458
Fsp4HI	GCNGC	7 cut(s)	54, 81, 84, 160, 210, 371, 564
FspBI	CTAG	2 cut(s)	44, 875
FspI	TGCGCA	1 cut(s)	471
GlaI	GCGC	2 cut(s)	374, 471
GluI	GCNGC	7 cut(s)	54, 81, 84, 160, 210, 371, 564
HaeIII	GGCC	4 cut(s)	5, 65, 127, 722
HapII	CCGG	4 cut(s)	416, 434, 519, 718
HgaI	GACGC	2 cut(s)	59, 388
HhaI	GCGC	2 cut(s)	375, 472
Hin1I	GRCGYC	2 cut(s)	51, 380
Hin1II	CATG	5 cut(s)	517, 601, 748, 783, 821
Hin6I	GCGC	2 cut(s)	373, 470
HinP1I	GCGC	2 cut(s)	373, 470
HincII	GTYRAC	3 cut(s)	232, 249, 334
HindII	GTYRAC	3 cut(s)	232, 249, 334
HinfI	GANTC	9 cut(s)	74, 221, 233, 239, 343, 397, 703, 801, 879
HpaII	CCGG	4 cut(s)	416, 434, 519, 718
HphI	GGTGA	1 cut(s)	284
Hpy166II	GTNNAC	5 cut(s)	31, 232, 249, 334, 463
Hpy188I	TCNGA	7 cut(s)	238, 259, 328, 558, 766, 828, 884
Hpy188III	TCNNGA	4 cut(s)	202, 310, 442, 818
Hpy8I	GTNNAC	5 cut(s)	31, 232, 249, 334, 463
Hpy99I	CGWCG	5 cut(s)	29, 233, 275, 382, 415
HpyAV	CCTTC	2 cut(s)	25, 540
HpyCH4V	TGCA	5 cut(s)	370, 563, 748, 779, 902
HpyF10VI	GCNNNNNNNGC	5 cut(s)	62, 379, 421, 430, 569
HpyF3I	CTNAG	1 cut(s)	763
Hsp92I	GRCGYC	2 cut(s)	51, 380
Hsp92II	CATG	5 cut(s)	517, 601, 748, 783, 821
HspAI	GCGC	2 cut(s)	373, 470
Kzo9I	GATC	5 cut(s)	306, 438, 672, 784, 868
LmnI	GCTCC	1 cut(s)	167
Lsp1109I	GCAGC	3 cut(s)	146, 382, 575
LweI	GCATC	3 cut(s)	263, 619, 869
MabI	ACCWGGT	1 cut(s)	895
MaeI	CTAG	2 cut(s)	44, 875
MalI	GATC	5 cut(s)	308, 440, 674, 786, 870
MbiI	CCGCTC	1 cut(s)	56
MboI	GATC	5 cut(s)	306, 438, 672, 784, 868
MboII	GAAGA	4 cut(s)	59, 316, 652, 808
MflI	RGATCY	1 cut(s)	868
MhlI	GDGCHC	3 cut(s)	458, 742, 833
MluCI	AATT	3 cut(s)	445, 692, 725
MlyI	GAGTC	6 cut(s)	68, 215, 227, 233, 352, 391
MmeI	TCCRAC	2 cut(s)	261, 614
MroXI	GAANNNNTTC	1 cut(s)	800
MseI	TTAA	3 cut(s)	546, 621, 919
MspA1I	CMGCKG	1 cut(s)	836
MspI	CCGG	4 cut(s)	416, 434, 519, 718
MspR9I	CCNGG	7 cut(s)	283, 435, 520, 719, 844, 866, 897
Mva1269I	GAATGC	1 cut(s)	565
MvaI	CCWGG	4 cut(s)	283, 844, 866, 897
MvnI	CGCG	1 cut(s)	311
MwoI	GCNNNNNNNGC	5 cut(s)	62, 379, 421, 430, 569
NciI	CCSGG	3 cut(s)	435, 520, 719
NdeII	GATC	5 cut(s)	306, 438, 672, 784, 868
NlaIII	CATG	5 cut(s)	517, 601, 748, 783, 821
NlaIV	GGNNCC	3 cut(s)	128, 279, 527
NruI	TCGCGA	1 cut(s)	311
NsbI	TGCGCA	1 cut(s)	471
NspI	RCATGY	3 cut(s)	517, 748, 783
NspV	TTCGAA	1 cut(s)	361
PaeI	GCATGC	1 cut(s)	783
PagI	TCATGA	1 cut(s)	817
PasI	CCCWGGG	1 cut(s)	282
PcsI	WCGNNNNNNNCGW	1 cut(s)	225
PctI	GAATGC	1 cut(s)	565
PdmI	GAANNNNTTC	1 cut(s)	800
PfeI	GAWTC	3 cut(s)	703, 801, 879
PfoI	TCCNGGA	1 cut(s)	518
PkrI	GCNGC	7 cut(s)	55, 82, 85, 161, 211, 372, 565
Ple19I	CGATCG	1 cut(s)	787
PleI	GAGTC	6 cut(s)	68, 215, 227, 233, 351, 391
PpsI	GAGTC	6 cut(s)	68, 215, 227, 233, 351, 391
PpuMI	RGGWCCY	1 cut(s)	315
PshAI	GACNNNNGTC	1 cut(s)	342
Psp5II	RGGWCCY	1 cut(s)	315
Psp6I	CCWGG	4 cut(s)	281, 842, 864, 895
PspGI	CCWGG	4 cut(s)	281, 842, 864, 895
PspN4I	GGNNCC	3 cut(s)	128, 279, 527
PspPI	GGNCC	4 cut(s)	63, 126, 315, 720
PspPPI	RGGWCCY	1 cut(s)	315
PstNI	CAGNNNCTG	1 cut(s)	871
PsuI	RGATCY	1 cut(s)	868
PvuI	CGATCG	1 cut(s)	787
RruI	TCGCGA	1 cut(s)	311
RsaI	GTAC	1 cut(s)	890
RsaNI	GTAC	1 cut(s)	889
SalI	GTCGAC	1 cut(s)	230
SaqAI	TTAA	3 cut(s)	546, 621, 919
SatI	GCNGC	7 cut(s)	54, 81, 84, 160, 210, 371, 564
Sau3AI	GATC	5 cut(s)	306, 438, 672, 784, 868
Sau96I	GGNCC	4 cut(s)	63, 126, 315, 720
SchI	GAGTC	6 cut(s)	68, 215, 227, 233, 352, 391
ScrFI	CCNGG	7 cut(s)	283, 435, 520, 719, 844, 866, 897
SduI	GDGCHC	3 cut(s)	458, 742, 833
SexAI	ACCWGGT	1 cut(s)	895
SfaNI	GCATC	3 cut(s)	263, 619, 869
SfcI	CTRYAG	1 cut(s)	498
SfuI	TTCGAA	1 cut(s)	361
SinI	GGWCC	1 cut(s)	315
SphI	GCATGC	1 cut(s)	783
Sse9I	AATT	3 cut(s)	445, 692, 725
SspMI	CTAG	2 cut(s)	44, 875
StyD4I	CCNGG	7 cut(s)	281, 433, 518, 717, 842, 864, 895
TaqI	TCGA	5 cut(s)	219, 231, 273, 361, 706
TaqII	GACCGA	1 cut(s)	523
TasI	AATT	3 cut(s)	445, 692, 725
TauI	GCSGC	4 cut(s)	56, 83, 86, 212
TfiI	GAWTC	3 cut(s)	703, 801, 879
Tru1I	TTAA	3 cut(s)	546, 621, 919
Tru9I	TTAA	3 cut(s)	546, 621, 919
TseI	GCWGC	3 cut(s)	159, 370, 563
TspDTI	ATGAA	2 cut(s)	497, 607
TspGWI	ACGGA	2 cut(s)	217, 390
VpaK11BI	GGWCC	1 cut(s)	315
XapI	RAATTY	3 cut(s)	445, 692, 725
XceI	RCATGY	3 cut(s)	517, 748, 783
XmiI	GTMKAC	1 cut(s)	231
XmnI	GAANNNNTTC	1 cut(s)	800
XspI	CTAG	2 cut(s)	44, 875

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.