Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0007210

Physical Location & Seq

Genomic Coordinates Reverse (-)

21304532 .. 21315000

Gene Structure 10469 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1127200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGGCCTCCCCGAGCCTCTACCCCGTCGTGGACGACAATGACCTAGACGACGCCGCTCTGTGGGCCGTCATCGACTCCGCCGCCGCCTCCCACTCCTCCTCCAAATCCAAACCCCAACCCCGCAAGCCCCTCGCAATCCAATACCCAAACTACCCTCGCTCCTCTCCAGTCTCAAAACCTTCTCCACCGCCGAAGCTCTTCAAGAGCGCCGCAAGGCTTGACTCCTCGGCCGACTCCGACTCCAAGTCATCCGCATCAGAAGGCGTGGTCATCGAGGAACCCTGGGCGTTTCATCCCCCGAGCAAGATCGCGAGGTCCTCTTCTTCCGAAATGAACGACACTAGTCCTCTTGTCGTAGTTCGAAATGTGCAGCGCACGACGCCTACCACTCCTACGACGCCGTTTTATTCGTTGCCGGAAACGCACTTGTCGCCGGGGATCGGGAATTTTGCGAGCCCTGTGAGCCATGCGCGGAGAGAGGAGAGGGATGTAGCTGCTCATAGCATGTCCGGGAGGTTCCCTTCGGTCTCTTTGTTCAAGGAGTATCAGAATGCAGCTATGGCGATTCTGGAGAAAACAGATTACACTATGATTTCTGGGCATCCTTTCATTAAAAAGTCAGGTTGGAGGAAGATATCGTTTTACTTCAATCTCTCTTTTGAGATCAAAGACAAGACCATTGAGTTTGATAAAGATCGAAATGTTCTTCGCGCTGAATTTGTGGTTCGGGCACACATGCAGGGTGGTAGGTTCTCAGATGGATGGGGCGCATGCGACCGGCGTGAGAAGAGATTCAATAAACCGAATCATGATATTCCAAGCACAGCAGAGACCAGGGCTAAAAGCAAAGCATCCCAGGATCTGCTAGGAATCGGAGATTACCGACCGGGCGCAAGTCAGTTCAACCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

304

Amino Acids

33.52

Weight (kDa)

9.26

Isoelectric Point (pI)

56.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007210)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09430 AT3G09430 AT3G09430
fragaria_vesca	FvH4_6g13970 FvH4_6g13970 FvH4_6g13970 FvH4_6g13970
malus_domestica	MD02G1131100.v1.1 MD04G1127200.v1.1 MD05G1218700.v1.1 MD12G1140400.v1.1 MD15G1437500.v1.1 MD16G1182100.v1.1
prunus_persica	Prupe.6G253700_v2.0.a1 Prupe.6G253700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0466791
rosa_laevigata	RLG00000024552
rosa_roxburghii	Rroxscaffold_6G00414140
rosa_rugosa	Rorug03G0083800 Rorug03G0083800
rosa_samantha	Rh3AG131200 Rh3BG152300 Rh3CG152400 Rh3DG153400
rosa_wichuraiana	Rw3G012400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	56
AccII	CGCG	3 cut(s)	311, 472, 711
AciI	CCGC	9 cut(s)	54, 78, 81, 84, 121, 188, 210, 252, 472
AclWI	GGATC	2 cut(s)	446, 867
AcoI	YGGCCR	1 cut(s)	228
AcsI	RAATTY	2 cut(s)	445, 716
AcyI	GRCGYC	3 cut(s)	51, 380, 398
AfiI	CCNNNNNNNGG	3 cut(s)	28, 60, 440
AgsI	TTSAA	5 cut(s)	202, 538, 649, 796, 904
AhdI	GACNNNNNGTC	1 cut(s)	244
AhlI	ACTAGT	1 cut(s)	341
AjnI	CCWGG	3 cut(s)	281, 833, 855
AluBI	AGCT	3 cut(s)	196, 494, 557
AluI	AGCT	3 cut(s)	196, 494, 557
Alw26I	GTCTC	3 cut(s)	175, 532, 824
AlwI	GGATC	2 cut(s)	446, 867
AlwNI	CAGNNNCTG	1 cut(s)	862
Ama87I	CYCGRG	2 cut(s)	10, 298
AoxI	GGCC	3 cut(s)	3, 63, 228
ApeKI	GCWGC	3 cut(s)	370, 494, 554
ApoI	RAATTY	2 cut(s)	445, 716
Asp700I	GAANNNNTTC	2 cut(s)	197, 791
AspLEI	GCGC	6 cut(s)	209, 375, 472, 713, 770, 893
AspS9I	GGNCC	2 cut(s)	63, 315
AsuC2I	CCSGG	3 cut(s)	435, 511, 888
AsuII	TTCGAA	1 cut(s)	361
AvaI	CYCGRG	2 cut(s)	10, 298
AvaII	GGWCC	1 cut(s)	315
BaeGI	GKGCMC	1 cut(s)	733
BanII	GRGCYC	1 cut(s)	458
BbvI	GCAGC	3 cut(s)	382, 481, 566
BccI	CCATC	2 cut(s)	752, 756
BceAI	ACGGC	2 cut(s)	50, 385
BcgI	CGANNNNNNTGC	2 cut(s)	112, 146
BciT130I	CCWGG	3 cut(s)	283, 835, 857
BcnI	CCSGG	3 cut(s)	435, 511, 888
BcoDI	GTCTC	3 cut(s)	175, 532, 824
BcuI	ACTAGT	1 cut(s)	341
BfaI	CTAG	3 cut(s)	44, 342, 866
BfoI	RGCGCY	1 cut(s)	210
BisI	GCNGC	7 cut(s)	54, 81, 84, 210, 371, 495, 555
BlsI	GCNGC	7 cut(s)	55, 82, 85, 211, 372, 496, 556
Bme1390I	CCNGG	6 cut(s)	283, 435, 511, 835, 857, 888
Bme18I	GGWCC	1 cut(s)	315
BmeRI	GACNNNNNGTC	1 cut(s)	244
BmeT110I	CYCGRG	2 cut(s)	10, 298
BmgT120I	GGNCC	2 cut(s)	63, 315
BmiI	GGNNCC	2 cut(s)	279, 518
BmrFI	CCNGG	6 cut(s)	283, 435, 511, 835, 857, 888
BmsI	GCATC	3 cut(s)	263, 610, 860
BoxI	GACNNNNGTC	1 cut(s)	342
BpmI	CTGGAG	2 cut(s)	150, 590
Bpu14I	TTCGAA	1 cut(s)	361
BpuMI	CCSGG	3 cut(s)	435, 511, 888
BsaBI	GATNNNNATC	1 cut(s)	693
BsaHI	GRCGYC	3 cut(s)	51, 380, 398
BsaI	GGTCTC	2 cut(s)	532, 824
BsaJI	CCNNGG	6 cut(s)	225, 281, 282, 434, 834, 855
BsaXI	ACNNNNNCTCC	6 cut(s)	83, 113, 143, 173, 224, 254
Bsc4I	CCNNNNNNNGG	3 cut(s)	28, 60, 440
Bse118I	RCCGGY	1 cut(s)	777
Bse1I	ACTGG	1 cut(s)	167
Bse8I	GATNNNNATC	1 cut(s)	693
BseBI	CCWGG	3 cut(s)	283, 835, 857
BseDI	CCNNGG	6 cut(s)	225, 281, 282, 434, 834, 855
BseGI	GGATG	6 cut(s)	248, 292, 493, 601, 767, 851
BseJI	GATNNNNATC	1 cut(s)	693
BseLI	CCNNNNNNNGG	3 cut(s)	28, 60, 440
BseMII	CTCAG	1 cut(s)	768
BseNI	ACTGG	1 cut(s)	167
BseRI	GAGGAG	5 cut(s)	85, 88, 151, 214, 494
BseSI	GKGCMC	1 cut(s)	733
BseX3I	CGGCCG	1 cut(s)	228
BseXI	GCAGC	3 cut(s)	382, 481, 566
BsgI	GTGCAG	1 cut(s)	389
Bsh1236I	CGCG	3 cut(s)	311, 472, 711
Bsh1285I	CGRYCG	3 cut(s)	231, 778, 887
BshFI	GGCC	3 cut(s)	5, 65, 230
BsiEI	CGRYCG	3 cut(s)	231, 778, 887
BsiHKCI	CYCGRG	2 cut(s)	10, 298
BsiSI	CCGG	5 cut(s)	416, 434, 510, 778, 887
BslI	CCNNNNNNNGG	3 cut(s)	28, 60, 440
BsmAI	GTCTC	3 cut(s)	175, 532, 824
BsmI	GAATGC	1 cut(s)	556
BsnI	GGCC	3 cut(s)	5, 65, 230
Bso31I	GGTCTC	2 cut(s)	532, 824
BsoBI	CYCGRG	2 cut(s)	10, 298
Bsp119I	TTCGAA	1 cut(s)	361
Bsp1286I	GDGCHC	2 cut(s)	458, 733
Bsp143I	GATC	5 cut(s)	306, 438, 663, 694, 859
Bsp68I	TCGCGA	1 cut(s)	311
BspACI	CCGC	9 cut(s)	54, 78, 81, 84, 121, 188, 210, 252, 472
BspANI	GGCC	3 cut(s)	5, 65, 230
BspCNI	CTCAG	1 cut(s)	767
BspFNI	CGCG	3 cut(s)	311, 472, 711
BspHI	TCATGA	1 cut(s)	808
BspLI	GGNNCC	2 cut(s)	279, 518
BspPI	GGATC	2 cut(s)	446, 867
BspQI	GCTCTTC	1 cut(s)	203
BspT104I	TTCGAA	1 cut(s)	361
BspTNI	GGTCTC	2 cut(s)	532, 824
BsrBI	CCGCTC	1 cut(s)	56
BsrFI	RCCGGY	1 cut(s)	777
BsrI	ACTGG	1 cut(s)	167
BssAI	RCCGGY	1 cut(s)	777
BssECI	CCNNGG	6 cut(s)	225, 281, 282, 434, 834, 855
BssMI	GATC	5 cut(s)	306, 438, 663, 694, 859
BssNI	GRCGYC	3 cut(s)	51, 380, 398
Bst2UI	CCWGG	3 cut(s)	283, 835, 857
Bst6I	CTCTTC	3 cut(s)	203, 325, 782
BstACI	GRCGYC	3 cut(s)	51, 380, 398
BstBI	TTCGAA	1 cut(s)	361
BstC8I	GCNNGC	3 cut(s)	125, 454, 772
BstDEI	CTNAG	1 cut(s)	754
BstF5I	GGATG	6 cut(s)	248, 292, 493, 601, 767, 851
BstFNI	CGCG	3 cut(s)	311, 472, 711
BstH2I	RGCGCY	1 cut(s)	210
BstHHI	GCGC	6 cut(s)	209, 375, 472, 713, 770, 893
BstKTI	GATC	5 cut(s)	309, 441, 666, 697, 862
BstMAI	GTCTC	3 cut(s)	175, 532, 824
BstMBI	GATC	5 cut(s)	306, 438, 663, 694, 859
BstMCI	CGRYCG	3 cut(s)	231, 778, 887
BstMWI	GCNNNNNNNGC	6 cut(s)	62, 379, 421, 430, 462, 560
BstNI	CCWGG	3 cut(s)	283, 835, 857
BstNSI	RCATGY	3 cut(s)	508, 739, 774
BstPAI	GACNNNNGTC	1 cut(s)	342
BstSCI	CCNGG	6 cut(s)	281, 433, 509, 833, 855, 886
BstSLI	GKGCMC	1 cut(s)	733
BstUI	CGCG	3 cut(s)	311, 472, 711
BstV1I	GCAGC	3 cut(s)	382, 481, 566
BstX2I	RGATCY	1 cut(s)	859
BstYI	RGATCY	1 cut(s)	859
BstZI	CGGCCG	1 cut(s)	228
BsuRI	GGCC	3 cut(s)	5, 65, 230
BtsCI	GGATG	6 cut(s)	248, 292, 493, 601, 767, 851
BtuMI	TCGCGA	1 cut(s)	311
Cac8I	GCNNGC	3 cut(s)	125, 454, 772
CaiI	CAGNNNCTG	1 cut(s)	862
CciI	TCATGA	1 cut(s)	808
CfoI	GCGC	6 cut(s)	209, 375, 472, 713, 770, 893
Cfr10I	RCCGGY	1 cut(s)	777
Cfr13I	GGNCC	2 cut(s)	63, 315
CseI	GACGC	3 cut(s)	59, 388, 406
CviAII	CATG	5 cut(s)	467, 505, 736, 771, 809
DdeI	CTNAG	1 cut(s)	754
DpnI	GATC	5 cut(s)	308, 440, 665, 696, 861
DpnII	GATC	5 cut(s)	306, 438, 663, 694, 859
DriI	GACNNNNNGTC	1 cut(s)	244
EaeI	YGGCCR	1 cut(s)	228
EagI	CGGCCG	1 cut(s)	228
Eam1104I	CTCTTC	3 cut(s)	203, 325, 782
Eam1105I	GACNNNNNGTC	1 cut(s)	244
EarI	CTCTTC	3 cut(s)	203, 325, 782
EciI	GGCGGA	1 cut(s)	67
EclXI	CGGCCG	1 cut(s)	228
Eco24I	GRGCYC	1 cut(s)	458
Eco31I	GGTCTC	2 cut(s)	532, 824
Eco32I	GATATC	1 cut(s)	636
Eco47I	GGWCC	1 cut(s)	315
Eco52I	CGGCCG	1 cut(s)	228
Eco88I	CYCGRG	2 cut(s)	10, 298
EcoO109I	RGGNCCY	1 cut(s)	315
EcoRII	CCWGG	3 cut(s)	281, 833, 855
EcoRV	GATATC	1 cut(s)	636
EcoT38I	GRGCYC	1 cut(s)	458
FaeI	CATG	5 cut(s)	470, 508, 739, 774, 812
FaiI	YATR	8 cut(s)	468, 501, 506, 560, 590, 737, 772, 810
FatI	CATG	5 cut(s)	466, 504, 735, 770, 808
FauI	CCCGC	1 cut(s)	128
Fnu4HI	GCNGC	7 cut(s)	54, 81, 84, 210, 371, 495, 555
FokI	GGATG	6 cut(s)	235, 279, 500, 588, 774, 838
FriOI	GRGCYC	1 cut(s)	458
Fsp4HI	GCNGC	7 cut(s)	54, 81, 84, 210, 371, 495, 555
FspBI	CTAG	3 cut(s)	44, 342, 866
GlaI	GCGC	6 cut(s)	208, 374, 471, 712, 769, 892
GluI	GCNGC	7 cut(s)	54, 81, 84, 210, 371, 495, 555
GsuI	CTGGAG	2 cut(s)	150, 590
HaeII	RGCGCY	1 cut(s)	210
HaeIII	GGCC	3 cut(s)	5, 65, 230
HapII	CCGG	5 cut(s)	416, 434, 510, 778, 887
HgaI	GACGC	3 cut(s)	59, 388, 406
HhaI	GCGC	6 cut(s)	209, 375, 472, 713, 770, 893
Hin1I	GRCGYC	3 cut(s)	51, 380, 398
Hin1II	CATG	5 cut(s)	470, 508, 739, 774, 812
Hin6I	GCGC	6 cut(s)	207, 373, 470, 711, 768, 891
HinP1I	GCGC	6 cut(s)	207, 373, 470, 711, 768, 891
HinfI	GANTC	8 cut(s)	74, 221, 233, 239, 565, 792, 805, 870
HpaII	CCGG	5 cut(s)	416, 434, 510, 778, 887
Hpy166II	GTNNAC	1 cut(s)	31
Hpy188I	TCNGA	6 cut(s)	238, 259, 328, 549, 757, 875
Hpy188III	TCNNGA	5 cut(s)	202, 310, 442, 569, 809
Hpy8I	GTNNAC	1 cut(s)	31
Hpy99I	CGWCG	4 cut(s)	29, 53, 382, 400
HpyAV	CCTTC	3 cut(s)	189, 254, 531
HpyCH4V	TGCA	3 cut(s)	370, 554, 739
HpyF10VI	GCNNNNNNNGC	6 cut(s)	62, 379, 421, 430, 462, 560
HpyF3I	CTNAG	1 cut(s)	754
Hsp92I	GRCGYC	3 cut(s)	51, 380, 398
Hsp92II	CATG	5 cut(s)	470, 508, 739, 774, 812
HspAI	GCGC	6 cut(s)	207, 373, 470, 711, 768, 891
Kzo9I	GATC	5 cut(s)	306, 438, 663, 694, 859
LguI	GCTCTTC	1 cut(s)	203
LmnI	GCTCC	1 cut(s)	164
Lsp1109I	GCAGC	3 cut(s)	382, 481, 566
LweI	GCATC	3 cut(s)	263, 610, 860
MaeI	CTAG	3 cut(s)	44, 342, 866
MalI	GATC	5 cut(s)	308, 440, 665, 696, 861
MbiI	CCGCTC	1 cut(s)	56
MboI	GATC	5 cut(s)	306, 438, 663, 694, 859
MboII	GAAGA	6 cut(s)	190, 312, 315, 643, 698, 799
MflI	RGATCY	1 cut(s)	859
MhlI	GDGCHC	2 cut(s)	458, 733
MluCI	AATT	2 cut(s)	445, 716
MlyI	GAGTC	4 cut(s)	68, 215, 227, 233
MmeI	TCCRAC	2 cut(s)	261, 605
MroXI	GAANNNNTTC	2 cut(s)	197, 791
MseI	TTAA	2 cut(s)	612, 910
MspI	CCGG	5 cut(s)	416, 434, 510, 778, 887
MspR9I	CCNGG	6 cut(s)	283, 435, 511, 835, 857, 888
Mva1269I	GAATGC	1 cut(s)	556
MvaI	CCWGG	3 cut(s)	283, 835, 857
MvnI	CGCG	3 cut(s)	311, 472, 711
MwoI	GCNNNNNNNGC	6 cut(s)	62, 379, 421, 430, 462, 560
NciI	CCSGG	3 cut(s)	435, 511, 888
NdeII	GATC	5 cut(s)	306, 438, 663, 694, 859
NlaIII	CATG	5 cut(s)	470, 508, 739, 774, 812
NlaIV	GGNNCC	2 cut(s)	279, 518
NmeAIII	GCCGAG	1 cut(s)	206
NruI	TCGCGA	1 cut(s)	311
NspI	RCATGY	3 cut(s)	508, 739, 774
NspV	TTCGAA	1 cut(s)	361
PaeI	GCATGC	1 cut(s)	774
PagI	TCATGA	1 cut(s)	808
PasI	CCCWGGG	1 cut(s)	282
PciSI	GCTCTTC	1 cut(s)	203
PctI	GAATGC	1 cut(s)	556
PdmI	GAANNNNTTC	2 cut(s)	197, 791
PfeI	GAWTC	4 cut(s)	565, 792, 805, 870
PfoI	TCCNGGA	1 cut(s)	509
PkrI	GCNGC	7 cut(s)	55, 82, 85, 211, 372, 496, 556
PleI	GAGTC	4 cut(s)	68, 215, 227, 233
PpsI	GAGTC	4 cut(s)	68, 215, 227, 233
PpuMI	RGGWCCY	1 cut(s)	315
PshAI	GACNNNNGTC	1 cut(s)	342
Psp5II	RGGWCCY	1 cut(s)	315
Psp6I	CCWGG	3 cut(s)	281, 833, 855
PspGI	CCWGG	3 cut(s)	281, 833, 855
PspN4I	GGNNCC	2 cut(s)	279, 518
PspPI	GGNCC	2 cut(s)	63, 315
PspPPI	RGGWCCY	1 cut(s)	315
PstNI	CAGNNNCTG	1 cut(s)	862
PsuI	RGATCY	1 cut(s)	859
RruI	TCGCGA	1 cut(s)	311
SapI	GCTCTTC	1 cut(s)	203
SaqAI	TTAA	2 cut(s)	612, 910
SatI	GCNGC	7 cut(s)	54, 81, 84, 210, 371, 495, 555
Sau3AI	GATC	5 cut(s)	306, 438, 663, 694, 859
Sau96I	GGNCC	2 cut(s)	63, 315
SchI	GAGTC	4 cut(s)	68, 215, 227, 233
ScrFI	CCNGG	6 cut(s)	283, 435, 511, 835, 857, 888
SduI	GDGCHC	2 cut(s)	458, 733
SetI	ASST	9 cut(s)	45, 181, 198, 317, 496, 518, 559, 625, 752
SfaNI	GCATC	3 cut(s)	263, 610, 860
SfuI	TTCGAA	1 cut(s)	361
SinI	GGWCC	1 cut(s)	315
SpeI	ACTAGT	1 cut(s)	341
SphI	GCATGC	1 cut(s)	774
Sse9I	AATT	2 cut(s)	445, 716
SsiI	CCGC	9 cut(s)	54, 78, 81, 84, 121, 188, 210, 252, 472
SspMI	CTAG	3 cut(s)	44, 342, 866
StyD4I	CCNGG	6 cut(s)	281, 433, 509, 833, 855, 886
TaqI	TCGA	4 cut(s)	72, 273, 361, 697
TaqII	GACCGA	1 cut(s)	514
TasI	AATT	2 cut(s)	445, 716
TauI	GCSGC	4 cut(s)	56, 83, 86, 212
TfiI	GAWTC	4 cut(s)	565, 792, 805, 870
Tru1I	TTAA	2 cut(s)	612, 910
Tru9I	TTAA	2 cut(s)	612, 910
TseI	GCWGC	3 cut(s)	370, 494, 554
TspDTI	ATGAA	3 cut(s)	281, 347, 598
VpaK11BI	GGWCC	1 cut(s)	315
XapI	RAATTY	2 cut(s)	445, 716
XceI	RCATGY	3 cut(s)	508, 739, 774
XmnI	GAANNNNTTC	2 cut(s)	197, 791
XspI	CTAG	3 cut(s)	44, 342, 866

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.