Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009443

Physical Location & Seq

Genomic Coordinates Forward (+)

3008499 .. 3011465

Gene Structure 2967 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G09810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

ATGACCATGACAGCATTTCTCGCGAGACGGCTTATCGGTAACGGATCGAGCCAGATTCTCGGGACTTCGAGTTCTAGCTCCGGTCCGTTCATTTCCGTTTCTAGGGCTTTCTTCTCCTCCTCCACTCCGATCAAAGCTACTCTCTTTCCCGGTGATGGGATCGGTCCCGAAATCGCTGAATCTGTCAAGCAGGTGTTTACTGCCGCTGATGTGGTTATTGATTGGGACGAACAGTTTGTTGGTACTGAAGTAGATCCTAGAACCAATAGTTTCTTGACATGGGATAATCTTCAATCTGTGCTTAAAAACAAGGTTGGTTTGAAAGGACCAATGGCTACTCCAATTGGAAAGGGTCACCGTTCCTTGAACCTTACTCTTAGGAAAGAGCTGAATTTGTATGCCAATGTTAGGCCTTGTTACAGTCTTCCTGGTTACAAAACCCGTTATGATGATGTTGATCTCATTACCATTCGTGAGAACACTGAAGGAGAGTACAGTGGGCTTGAACACCAGGTCGTCAAGGGTGTAGTGGAAAGTCTTAAAATTATTACCCGTAAGGCGAGTATGAGAGTTGCCGAGTATGCCTTTCTTTATGCCAAGACTCACGGAAGGAAGAAAGTTTCTGCAATTCACAAAGCCAACATTATGCAGAAAACTGATGGTCTTTTCCTGCAGTGTTGTGATGAAGTTGCTGCGAAGTATCCTGAGATATATTACGAGAAGGTTGTTATTGACAATTGCTGTATGATGCTTGTGAAAAACCCAGCACTTTTTGATGTCTTGGTGATGCCAAATCTCTATGGAGATATTATCAGCGATTTGTGTGCTGGACTTGTTGGGGGACTAGGACTGACTCCTAGTATGAATATTGGGGAGGATGGTATTGCCCTTGCTGAAGCTGTTCACGGCTCTGCACCTGATATTGCTGGAATGAACCTGGCGAACCCAACAGCTTTGCTACTGAGTGGAGTGATGATGTTGCGGCACCTGAAGCTCAACAAACAAGCAGAGCAAATCCACAGTGCCATCATCAACACAATAGCCGAGGGAAAGTATAGAACTGCTGATCTCGGAGGTTCCTCAACTACAACAGATTTCACAAAAGCCATCTGTGATCATCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004448 GO:0004449 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0006102 GO:0008144 GO:0008150 GO:0008152 GO:0008270 GO:0009060 GO:0009507 GO:0009536 GO:0009987 GO:0015980 GO:0016491 GO:0016614 GO:0016616 GO:0016999 GO:0017076 GO:0017144 GO:0019752 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0046872 GO:0046914 GO:0055114 GO:0071704 GO:0072350 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00020 ko01100 ko01110 ko01120 ko01130 ko01200 ko01210 ko01230 map00020 map01100 map01110 map01120 map01130 map01200 map01210 map01230

Pfam Domains

Protein Families

Iso_dh

Protein Analysis

374

Amino Acids

40.58

Weight (kDa)

6.71

Isoelectric Point (pI)

32.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Iso_dh	PF00180	47 - 370	5.9e-105	Isocitrate/isopropylmalate dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009443)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09810 AT5G03290
fragaria_vesca	FvH4_6g16070 FvH4_6g16070 FvH4_6g16070 FvH4_6g16070
malus_domestica	MD04G1096100.v1.1 MD12G1116100.v1.1
prunus_persica	Prupe.6G235200_v2.0.a1
pyrus_communis	pycom04g09100
rosa_chinensis	RchiOBHm_Chr3g0469901
rosa_laevigata	RLG00000024314
rosa_multiflora	Rmu_sc0009708.1_g000001
rosa_roxburghii	Rroxscaffold_6G00411380
rosa_rugosa	Rorug03G0105200 Rorug03G0105300 Rorug03G0105400
rosa_samantha	Rh3AG154300 Rh3BG178400 Rh3CG169000 Rh3DG196800
rosa_wichuraiana	Rw3G014530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	181
Acc36I	ACCTGC	1 cut(s)	181
AccB1I	GGYRCC	1 cut(s)	984
AccII	CGCG	1 cut(s)	23
AciI	CCGC	2 cut(s)	204, 982
AclWI	GGATC	3 cut(s)	52, 167, 248
AcsI	RAATTY	1 cut(s)	391
AcuI	CTGAAG	4 cut(s)	267, 504, 915, 1010
AfaI	GTAC	2 cut(s)	244, 494
AfiI	CCNNNNNNNGG	4 cut(s)	102, 155, 156, 408
AgsI	TTSAA	4 cut(s)	293, 322, 367, 506
AjnI	CCWGG	3 cut(s)	427, 510, 936
AjuI	GAANNNNNNNTTGG	2 cut(s)	222, 254
AloI	GAACNNNNNNTCC	2 cut(s)	55, 87
AluBI	AGCT	6 cut(s)	78, 137, 388, 899, 953, 994
AluI	AGCT	6 cut(s)	78, 137, 388, 899, 953, 994
Alw26I	GTCTC	1 cut(s)	19
AlwI	GGATC	3 cut(s)	52, 167, 248
Ama87I	CYCGRG	1 cut(s)	59
AoxI	GGCC	1 cut(s)	410
ApeKI	GCWGC	1 cut(s)	692
ApoI	RAATTY	1 cut(s)	391
ArsI	GACNNNNNNTTYG	2 cut(s)	218, 250
Asp700I	GAANNNNTTC	1 cut(s)	900
AspS9I	GGNCC	3 cut(s)	83, 164, 326
AsuC2I	CCSGG	1 cut(s)	150
AsuHPI	GGTGA	3 cut(s)	164, 347, 796
AvaI	CYCGRG	1 cut(s)	59
AvaII	GGWCC	3 cut(s)	83, 164, 326
BaeI	ACNNNNGTAYC	2 cut(s)	234, 267
BanI	GGYRCC	1 cut(s)	984
BbsI	GAAGAC	1 cut(s)	416
BbvI	GCAGC	1 cut(s)	679
BccI	CCATC	5 cut(s)	149, 653, 872, 1034, 1115
BceAI	ACGGC	2 cut(s)	44, 922
BcgI	CGANNNNNNTGC	2 cut(s)	806, 840
BciT130I	CCWGG	3 cut(s)	429, 512, 938
BciVI	GTATCC	1 cut(s)	711
BclI	TGATCA	1 cut(s)	1114
BcnI	CCSGG	1 cut(s)	150
BcoDI	GTCTC	1 cut(s)	19
BfaI	CTAG	5 cut(s)	75, 102, 258, 845, 858
BfmI	CTRYAG	1 cut(s)	671
BfuAI	ACCTGC	1 cut(s)	181
BfuI	GTATCC	1 cut(s)	711
BisI	GCNGC	3 cut(s)	204, 693, 983
BlsI	GCNGC	3 cut(s)	205, 694, 984
Bme1390I	CCNGG	4 cut(s)	150, 429, 512, 938
Bme18I	GGWCC	3 cut(s)	83, 164, 326
BmeT110I	CYCGRG	1 cut(s)	59
BmgT120I	GGNCC	3 cut(s)	83, 164, 326
BmiI	GGNNCC	3 cut(s)	166, 986, 1078
BmrFI	CCNGG	4 cut(s)	150, 429, 512, 938
BmsI	GCATC	2 cut(s)	738, 777
BpiI	GAAGAC	1 cut(s)	416
BpuMI	CCSGG	1 cut(s)	150
BsaBI	GATNNNNATC	1 cut(s)	456
BsaJI	CCNNGG	1 cut(s)	1044
BsaWI	WCCGGW	1 cut(s)	80
Bsc4I	CCNNNNNNNGG	4 cut(s)	102, 155, 156, 408
Bse8I	GATNNNNATC	1 cut(s)	456
BseBI	CCWGG	3 cut(s)	429, 512, 938
BseDI	CCNNGG	1 cut(s)	1044
BseGI	GGATG	1 cut(s)	883
BseJI	GATNNNNATC	1 cut(s)	456
BseLI	CCNNNNNNNGG	4 cut(s)	102, 155, 156, 408
BseMII	CTCAG	2 cut(s)	696, 953
BseRI	GAGGAG	2 cut(s)	106, 109
BseXI	GCAGC	1 cut(s)	679
BseYI	CCCAGC	1 cut(s)	763
BsgI	GTGCAG	1 cut(s)	897
Bsh1236I	CGCG	1 cut(s)	23
BshFI	GGCC	1 cut(s)	412
BshNI	GGYRCC	1 cut(s)	984
BsiHKCI	CYCGRG	1 cut(s)	59
BsiSI	CCGG	2 cut(s)	81, 150
BslFI	GGGAC	4 cut(s)	76, 150, 239, 855
BslI	CCNNNNNNNGG	4 cut(s)	102, 155, 156, 408
BsmAI	GTCTC	1 cut(s)	19
BsmBI	CGTCTC	1 cut(s)	19
BsmFI	GGGAC	4 cut(s)	76, 150, 239, 855
BsnI	GGCC	1 cut(s)	412
BsoBI	CYCGRG	1 cut(s)	59
Bsp143I	GATC	7 cut(s)	44, 129, 159, 253, 457, 1066, 1114
Bsp68I	TCGCGA	1 cut(s)	23
BspACI	CCGC	2 cut(s)	204, 982
BspANI	GGCC	1 cut(s)	412
BspCNI	CTCAG	2 cut(s)	697, 954
BspFNI	CGCG	1 cut(s)	23
BspLI	GGNNCC	3 cut(s)	166, 986, 1078
BspMAI	CTGCAG	1 cut(s)	675
BspMI	ACCTGC	1 cut(s)	181
BspPI	GGATC	3 cut(s)	52, 167, 248
BspT107I	GGYRCC	1 cut(s)	984
BssECI	CCNNGG	1 cut(s)	1044
BssMI	GATC	7 cut(s)	44, 129, 159, 253, 457, 1066, 1114
Bst2UI	CCWGG	3 cut(s)	429, 512, 938
Bst4CI	ACNGT	5 cut(s)	234, 359, 422, 497, 1022
BstDEI	CTNAG	3 cut(s)	377, 705, 962
BstEII	GGTNACC	1 cut(s)	353
BstF5I	GGATG	1 cut(s)	883
BstFNI	CGCG	1 cut(s)	23
BstKTI	GATC	7 cut(s)	47, 132, 162, 256, 460, 1069, 1117
BstMAI	GTCTC	1 cut(s)	19
BstMBI	GATC	7 cut(s)	44, 129, 159, 253, 457, 1066, 1114
BstMWI	GCNNNNNNNGC	3 cut(s)	20, 581, 991
BstNI	CCWGG	3 cut(s)	429, 512, 938
BstPI	GGTNACC	1 cut(s)	353
BstSCI	CCNGG	4 cut(s)	148, 427, 510, 936
BstSFI	CTRYAG	1 cut(s)	671
BstUI	CGCG	1 cut(s)	23
BstV1I	GCAGC	1 cut(s)	679
BstV2I	GAAGAC	1 cut(s)	416
BstX2I	RGATCY	1 cut(s)	253
BstYI	RGATCY	1 cut(s)	253
BsuI	GTATCC	1 cut(s)	711
BsuRI	GGCC	1 cut(s)	412
BtsCI	GGATG	1 cut(s)	883
BtsI	GCAGTG	1 cut(s)	680
BtsIMutI	CAGTG	4 cut(s)	480, 502, 680, 1027
BtuMI	TCGCGA	1 cut(s)	23
BveI	ACCTGC	1 cut(s)	181
Cfr13I	GGNCC	3 cut(s)	83, 164, 326
CpoI	CGGWCCG	1 cut(s)	83
CsiI	ACCWGGT	1 cut(s)	510
Csp6I	GTAC	2 cut(s)	243, 493
CspI	CGGWCCG	1 cut(s)	83
CviAII	CATG	2 cut(s)	7, 279
CviQI	GTAC	2 cut(s)	243, 493
DdeI	CTNAG	3 cut(s)	377, 705, 962
DpnI	GATC	7 cut(s)	46, 131, 161, 255, 459, 1068, 1116
DpnII	GATC	7 cut(s)	44, 129, 159, 253, 457, 1066, 1114
Eco147I	AGGCCT	1 cut(s)	412
Eco47I	GGWCC	3 cut(s)	83, 164, 326
Eco57I	CTGAAG	4 cut(s)	267, 504, 915, 1010
Eco88I	CYCGRG	1 cut(s)	59
Eco91I	GGTNACC	1 cut(s)	353
EcoO65I	GGTNACC	1 cut(s)	353
EcoRII	CCWGG	3 cut(s)	427, 510, 936
Esp3I	CGTCTC	1 cut(s)	19
FaeI	CATG	2 cut(s)	10, 282
FaqI	GGGAC	4 cut(s)	76, 150, 239, 855
FatI	CATG	2 cut(s)	6, 278
FbaI	TGATCA	1 cut(s)	1114
Fnu4HI	GCNGC	3 cut(s)	204, 693, 983
FokI	GGATG	1 cut(s)	890
Fsp4HI	GCNGC	3 cut(s)	204, 693, 983
FspBI	CTAG	5 cut(s)	75, 102, 258, 845, 858
GluI	GCNGC	3 cut(s)	204, 693, 983
GsaI	CCCAGC	1 cut(s)	767
HaeIII	GGCC	1 cut(s)	412
HapII	CCGG	2 cut(s)	81, 150
Hin1II	CATG	2 cut(s)	10, 282
HinfI	GANTC	4 cut(s)	55, 179, 601, 853
HpaII	CCGG	2 cut(s)	81, 150
HphI	GGTGA	3 cut(s)	164, 347, 796
Hpy166II	GTNNAC	2 cut(s)	198, 904
Hpy188I	TCNGA	2 cut(s)	129, 1073
Hpy188III	TCNNGA	6 cut(s)	22, 61, 167, 274, 473, 704
Hpy8I	GTNNAC	2 cut(s)	198, 904
HpyAV	CCTTC	3 cut(s)	479, 603, 715
HpyCH4III	ACNGT	5 cut(s)	234, 359, 422, 497, 1022
HpyCH4V	TGCA	4 cut(s)	626, 649, 673, 914
HpyF10VI	GCNNNNNNNGC	3 cut(s)	20, 581, 991
HpyF3I	CTNAG	3 cut(s)	377, 705, 962
Hsp92II	CATG	2 cut(s)	10, 282
Ksp22I	TGATCA	1 cut(s)	1114
Kzo9I	GATC	7 cut(s)	44, 129, 159, 253, 457, 1066, 1114
LmnI	GCTCC	1 cut(s)	83
Lsp1109I	GCAGC	1 cut(s)	679
LweI	GCATC	2 cut(s)	738, 777
MabI	ACCWGGT	1 cut(s)	510
MaeI	CTAG	5 cut(s)	75, 102, 258, 845, 858
MaeIII	GTNAC	4 cut(s)	38, 353, 416, 431
MalI	GATC	7 cut(s)	46, 131, 161, 255, 459, 1068, 1116
MboI	GATC	7 cut(s)	44, 129, 159, 253, 457, 1066, 1114
MboII	GAAGA	4 cut(s)	103, 281, 416, 625
MfeI	CAATTG	2 cut(s)	342, 736
MflI	RGATCY	1 cut(s)	253
MluCI	AATT	5 cut(s)	342, 391, 543, 627, 736
MlyI	GAGTC	2 cut(s)	595, 847
MnlI	CCTC	6 cut(s)	127, 130, 868, 1039, 1067, 1090
MroXI	GAANNNNTTC	1 cut(s)	900
MseI	TTAA	2 cut(s)	303, 540
MspA1I	CMGCKG	1 cut(s)	206
MspI	CCGG	2 cut(s)	81, 150
MspR9I	CCNGG	4 cut(s)	150, 429, 512, 938
MunI	CAATTG	2 cut(s)	342, 736
MvaI	CCWGG	3 cut(s)	429, 512, 938
MvnI	CGCG	1 cut(s)	23
MwoI	GCNNNNNNNGC	3 cut(s)	20, 581, 991
NciI	CCSGG	1 cut(s)	150
NdeII	GATC	7 cut(s)	44, 129, 159, 253, 457, 1066, 1114
NlaIII	CATG	2 cut(s)	10, 282
NlaIV	GGNNCC	3 cut(s)	166, 986, 1078
NmeAIII	GCCGAG	2 cut(s)	601, 1069
NmuCI	GTSAC	1 cut(s)	353
NruI	TCGCGA	1 cut(s)	23
PaqCI	CACCTGC	1 cut(s)	181
PceI	AGGCCT	1 cut(s)	412
PdmI	GAANNNNTTC	1 cut(s)	900
PfeI	GAWTC	2 cut(s)	55, 179
PkrI	GCNGC	3 cut(s)	205, 694, 984
PleI	GAGTC	2 cut(s)	595, 847
PpsI	GAGTC	2 cut(s)	595, 847
Psp6I	CCWGG	3 cut(s)	427, 510, 936
PspEI	GGTNACC	1 cut(s)	353
PspFI	CCCAGC	1 cut(s)	763
PspGI	CCWGG	3 cut(s)	427, 510, 936
PspN4I	GGNNCC	3 cut(s)	166, 986, 1078
PspPI	GGNCC	3 cut(s)	83, 164, 326
PstI	CTGCAG	1 cut(s)	675
PsuI	RGATCY	1 cut(s)	253
RruI	TCGCGA	1 cut(s)	23
RsaI	GTAC	2 cut(s)	244, 494
RsaNI	GTAC	2 cut(s)	243, 493
Rsr2I	CGGWCCG	1 cut(s)	83
RsrII	CGGWCCG	1 cut(s)	83
SaqAI	TTAA	2 cut(s)	303, 540
SatI	GCNGC	3 cut(s)	204, 693, 983
Sau3AI	GATC	7 cut(s)	44, 129, 159, 253, 457, 1066, 1114
Sau96I	GGNCC	3 cut(s)	83, 164, 326
SchI	GAGTC	2 cut(s)	595, 847
ScrFI	CCNGG	4 cut(s)	150, 429, 512, 938
SexAI	ACCWGGT	1 cut(s)	510
SfaNI	GCATC	2 cut(s)	738, 777
SfcI	CTRYAG	1 cut(s)	671
SinI	GGWCC	3 cut(s)	83, 164, 326
Sse9I	AATT	5 cut(s)	342, 391, 543, 627, 736
SseBI	AGGCCT	1 cut(s)	412
SsiI	CCGC	2 cut(s)	204, 982
SspI	AATATT	1 cut(s)	868
SspMI	CTAG	5 cut(s)	75, 102, 258, 845, 858
StuI	AGGCCT	1 cut(s)	412
StyD4I	CCNGG	4 cut(s)	148, 427, 510, 936
TaaI	ACNGT	5 cut(s)	234, 359, 422, 497, 1022
TaqI	TCGA	2 cut(s)	47, 68
TaqII	GACCGA	1 cut(s)	152
TasI	AATT	5 cut(s)	342, 391, 543, 627, 736
TatI	WGTACW	1 cut(s)	492
TauI	GCSGC	2 cut(s)	206, 985
TfiI	GAWTC	2 cut(s)	55, 179
Tru1I	TTAA	2 cut(s)	303, 540
Tru9I	TTAA	2 cut(s)	303, 540
TscAI	CASTG	4 cut(s)	487, 502, 680, 1027
TseFI	GTSAC	1 cut(s)	353
TseI	GCWGC	1 cut(s)	692
Tsp45I	GTSAC	1 cut(s)	353
TspDTI	ATGAA	4 cut(s)	79, 699, 878, 947
TspGWI	ACGGA	4 cut(s)	57, 75, 85, 621
TspRI	CASTG	4 cut(s)	487, 502, 680, 1027
VpaK11BI	GGWCC	3 cut(s)	83, 164, 326
XapI	RAATTY	1 cut(s)	391
XmnI	GAANNNNTTC	1 cut(s)	900
XspI	CTAG	5 cut(s)	75, 102, 258, 845, 858

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.