MD12G1116100.v1.1

Isocitrate dehydrogenase (NAD

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
Physical Location & Seq
Reverse (-)
18490176 .. 18493334
3159 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1116100.v1.1.491

Sequence Viewer

Length: 1128 bp
ATGGCTTCCCACCTATTGAGGCGCGCCTCCAGCCACTTCCTCTCCGGCGCCGTGAACCCTGGCCATAGCTTGCTGTCGTCATCATCCCCGTTATCTCAGGCAGCTAGGGTTTTCTCCTCCGCTTCCACTCCGATCCGAGCCACCCTCTTCCCCGGCGACGGTATCGGTCCCGAGATCGCCGAGTCCGTCAAACAGGTGTTCAGAGAAGCTGACGTGCCAATTGAATGGGAAGAACATTACGTTGGGACTGAAATCGATCCTAGAACACAGAGTTTCCTAACATGGGAAAGTTTAGAGTCAGTGCGGAAAAATGGGGTAGGCTTGAAAGGTCCAATGGCCACACCAATTGGGAAGGGTCATCGTTCATTGAACCTTACTCTAAGGAAGGAACTTAATTTGTATGCAAATGTCAGGCCTTGTTACAGCCTCCCTGGCTACAAAACTCGATATGACAATGTCGATCTTATCACTATTCGTGAAAATACAGAGGGAGAGTATAGTGGACTTGAACATCAAGTGGTGAGAGGTGTTGTCGAGAGCCTCAAGATCATCACCCGTCAGGCAAGCTTGAGGGTGGCTGAGTATGCTTTTCATTATGCTAAGTCCCATGGAAGAGATAGAGTCTCTGCAATTCACAAAGCAAACATTATGCAGAAAACTGATGGTCTTTTTCTTAAGTGTTGTCGTGAGGTTGCAGAGAAGTACCCTGAAATCAAATATGAGGAAGTCGTCATCGATAATTGCTGTATGATGCTTGTGAAGAATCCAGCACTTTTTGATGTGTTAGTGATGCCTAACCTCTATGGTGATATTATTAGTGATCTTTGTGCTGGGTTGATAGGTGGTTTGGGGTTAACACCAAGCTGCAATATTGGTGAGGGAGGCATAGCCCTTGCTGAAGCTGTACATGGTTCAGCACCTGATATTGCTGGAAAGAATTTGGCCAACCCAACTGCCCTGCTTCTGAGTGCTGTTACAATGCTACGCCATTTGGAGCTCCATGATAAAGCTGATCGGATCCAAAATGCGATCCTCGGCACAATTTCTGAGGGGAAGTTCCGAACTGCTGACCTTGGTGGCTCTTCATCAACTTCTGACTTTACGCAGGCAATCATCGATCATCTTTGA

Protein Analysis

376

Amino Acids

40.8

Weight (kDa)

6.36

Isoelectric Point (pI)

36.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Iso_dh PF00180 48 - 371 1.3e-107 Isocitrate/isopropylmalate dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 47
AccII CGCG 1 cut(s) 24
AciI CCGC 2 cut(s) 120, 304
AclWI GGATC 5 cut(s) 127, 251, 1012, 1024, 1025
AcoI YGGCCR 3 cut(s) 61, 336, 942
AcsI RAATTY 1 cut(s) 937
AcuI CTGAAG 1 cut(s) 918
AcyI GRCGYC 1 cut(s) 48
AfaI GTAC 2 cut(s) 704, 906
AfiI CCNNNNNNNGG 2 cut(s) 158, 283
AflII CTTAAG 1 cut(s) 674
AgsI TTSAA 4 cut(s) 224, 325, 370, 509
AjiI CACGTC 1 cut(s) 214
AjnI CCWGG 2 cut(s) 58, 430
AjuI GAANNNNNNNTTGG 2 cut(s) 225, 257
AluBI AGCT 8 cut(s) 69, 104, 209, 567, 864, 902, 997, 1010
AluI AGCT 8 cut(s) 69, 104, 209, 567, 864, 902, 997, 1010
Alw21I GWGCWC 1 cut(s) 999
Alw26I GTCTC 1 cut(s) 628
AlwI GGATC 5 cut(s) 127, 251, 1012, 1024, 1025
AlwNI CAGNNNCTG 1 cut(s) 920
Ama87I CYCGRG 1 cut(s) 170
AoxI GGCC 4 cut(s) 61, 336, 413, 942
ApeKI GCWGC 2 cut(s) 101, 864
ApoI RAATTY 1 cut(s) 937
AscI GGCGCGCC 1 cut(s) 22
AspLEI GCGC 3 cut(s) 24, 26, 50
AspS9I GGNCC 2 cut(s) 167, 329
AsuC2I CCSGG 1 cut(s) 153
AsuHPI GGTGA 4 cut(s) 532, 544, 818, 887
AvaI CYCGRG 1 cut(s) 170
AvaII GGWCC 2 cut(s) 167, 329
BalI TGGCCA 3 cut(s) 63, 338, 944
BamHI GGATCC 1 cut(s) 1017
BanI GGYRCC 1 cut(s) 47
BanII GRGCYC 1 cut(s) 999
Bbv12I GWGCWC 1 cut(s) 999
BbvI GCAGC 2 cut(s) 113, 851
BccI CCATC 1 cut(s) 656
BceAI ACGGC 1 cut(s) 35
BciT130I CCWGG 2 cut(s) 60, 432
BcnI CCSGG 1 cut(s) 153
BcoDI GTCTC 1 cut(s) 628
BfaI CTAG 2 cut(s) 105, 261
BfoI RGCGCY 1 cut(s) 51
BfrI CTTAAG 1 cut(s) 674
BglI GCCNNNNNGGC 1 cut(s) 432
BisI GCNGC 2 cut(s) 102, 865
BlsI GCNGC 2 cut(s) 103, 866
Bme1390I CCNGG 3 cut(s) 60, 153, 432
Bme18I GGWCC 2 cut(s) 167, 329
BmeT110I CYCGRG 1 cut(s) 170
BmgBI CACGTC 1 cut(s) 214
BmgT120I GGNCC 2 cut(s) 167, 329
BmiI GGNNCC 3 cut(s) 49, 169, 1019
BmrFI CCNGG 3 cut(s) 60, 153, 432
BmsI GCATC 2 cut(s) 741, 780
BplI GAGNNNNNCTC 2 cut(s) 129, 161
BpmI CTGGAG 1 cut(s) 13
BpuEI CTTGAG 2 cut(s) 527, 589
BpuMI CCSGG 1 cut(s) 153
Bsa29I ATCGAT 3 cut(s) 255, 735, 1116
BsaHI GRCGYC 1 cut(s) 48
BsaJI CCNNGG 6 cut(s) 58, 151, 430, 607, 1033, 1072
BsaXI ACNNNNNCTCC 2 cut(s) 26, 56
Bsc4I CCNNNNNNNGG 2 cut(s) 158, 283
BseBI CCWGG 2 cut(s) 60, 432
BseCI ATCGAT 3 cut(s) 255, 735, 1116
BseDI CCNNGG 6 cut(s) 58, 151, 430, 607, 1033, 1072
BseGI GGATG 1 cut(s) 83
BseLI CCNNNNNNNGG 2 cut(s) 158, 283
BseMII CTCAG 4 cut(s) 110, 570, 956, 1038
BsePI GCGCGC 1 cut(s) 22
BseRI GAGGAG 1 cut(s) 106
BseXI GCAGC 2 cut(s) 113, 851
BseYI CCCAGC 1 cut(s) 830
Bsh1236I CGCG 1 cut(s) 24
BshFI GGCC 4 cut(s) 63, 338, 415, 944
BshNI GGYRCC 1 cut(s) 47
BshVI ATCGAT 3 cut(s) 255, 735, 1116
BsiHKAI GWGCWC 1 cut(s) 999
BsiHKCI CYCGRG 1 cut(s) 170
BsiSI CCGG 2 cut(s) 45, 153
BslFI GGGAC 3 cut(s) 153, 259, 589
BslI CCNNNNNNNGG 2 cut(s) 158, 283
BsmAI GTCTC 1 cut(s) 628
BsmFI GGGAC 3 cut(s) 153, 259, 589
BsnI GGCC 4 cut(s) 63, 338, 415, 944
BsoBI CYCGRG 1 cut(s) 170
Bsp1286I GDGCHC 1 cut(s) 999
Bsp1407I TGTACA 1 cut(s) 904
Bsp19I CCATGG 1 cut(s) 607
BspACI CCGC 2 cut(s) 120, 304
BspANI GGCC 4 cut(s) 63, 338, 415, 944
BspCNI CTCAG 4 cut(s) 109, 571, 957, 1039
BspDI ATCGAT 3 cut(s) 255, 735, 1116
BspFNI CGCG 1 cut(s) 24
BspLI GGNNCC 3 cut(s) 49, 169, 1019
BspPI GGATC 5 cut(s) 127, 251, 1012, 1024, 1025
BspQI GCTCTTC 1 cut(s) 1087
BspT107I GGYRCC 1 cut(s) 47
BspTI CTTAAG 1 cut(s) 674
BsrGI TGTACA 1 cut(s) 904
BssECI CCNNGG 6 cut(s) 58, 151, 430, 607, 1033, 1072
BssHII GCGCGC 1 cut(s) 22
BssNI GRCGYC 1 cut(s) 48
BssT1I CCWWGG 2 cut(s) 607, 1072
Bst2UI CCWGG 2 cut(s) 60, 432
Bst4CI ACNGT 1 cut(s) 161
Bst6I CTCTTC 3 cut(s) 152, 607, 1087
BstACI GRCGYC 1 cut(s) 48
BstAFI CTTAAG 1 cut(s) 674
BstAUI TGTACA 1 cut(s) 904
BstC8I GCNNGC 4 cut(s) 24, 71, 565, 1107
BstDEI CTNAG 6 cut(s) 96, 380, 579, 600, 965, 1047
BstDSI CCRYGG 1 cut(s) 607
BstF5I GGATG 1 cut(s) 83
BstFNI CGCG 1 cut(s) 24
BstH2I RGCGCY 1 cut(s) 51
BstHHI GCGC 3 cut(s) 24, 26, 50
BstMAI GTCTC 1 cut(s) 628
BstMWI GCNNNNNNNGC 3 cut(s) 30, 432, 584
BstNI CCWGG 2 cut(s) 60, 432
BstSCI CCNGG 3 cut(s) 58, 151, 430
BstUI CGCG 1 cut(s) 24
BstV1I GCAGC 2 cut(s) 113, 851
BstX2I RGATCY 1 cut(s) 1017
BstXI CCANNNNNNTGG 1 cut(s) 225
BstYI RGATCY 1 cut(s) 1017
Bsu15I ATCGAT 3 cut(s) 255, 735, 1116
BsuRI GGCC 4 cut(s) 63, 338, 415, 944
BsuTUI ATCGAT 3 cut(s) 255, 735, 1116
BtgI CCRYGG 1 cut(s) 607
BtrI CACGTC 1 cut(s) 214
BtsCI GGATG 1 cut(s) 83
BtsIMutI CAGTG 1 cut(s) 306
Cac8I GCNNGC 4 cut(s) 24, 71, 565, 1107
CaiI CAGNNNCTG 1 cut(s) 920
CfoI GCGC 3 cut(s) 24, 26, 50
Cfr13I GGNCC 2 cut(s) 167, 329
ClaI ATCGAT 3 cut(s) 255, 735, 1116
Csp6I GTAC 2 cut(s) 703, 905
CspCI CAANNNNNGTGG 2 cut(s) 328, 363
CviAII CATG 4 cut(s) 282, 608, 908, 1001
CviQI GTAC 2 cut(s) 703, 905
DdeI CTNAG 6 cut(s) 96, 380, 579, 600, 965, 1047
DinI GGCGCC 1 cut(s) 49
EaeI YGGCCR 3 cut(s) 61, 336, 942
Eam1104I CTCTTC 3 cut(s) 152, 607, 1087
EarI CTCTTC 3 cut(s) 152, 607, 1087
Ecl136II GAGCTC 1 cut(s) 997
Eco130I CCWWGG 2 cut(s) 607, 1072
Eco147I AGGCCT 1 cut(s) 415
Eco24I GRGCYC 1 cut(s) 999
Eco47I GGWCC 2 cut(s) 167, 329
Eco53kI GAGCTC 1 cut(s) 997
Eco57I CTGAAG 1 cut(s) 918
Eco88I CYCGRG 1 cut(s) 170
EcoICRI GAGCTC 1 cut(s) 997
EcoRII CCWGG 2 cut(s) 58, 430
EcoT14I CCWWGG 2 cut(s) 607, 1072
EcoT38I GRGCYC 1 cut(s) 999
EgeI GGCGCC 1 cut(s) 49
EheI GGCGCC 1 cut(s) 49
ErhI CCWWGG 2 cut(s) 607, 1072
FaeI CATG 4 cut(s) 285, 611, 911, 1004
FaqI GGGAC 3 cut(s) 153, 259, 589
FatI CATG 4 cut(s) 281, 607, 907, 1000
Fnu4HI GCNGC 2 cut(s) 102, 865
FokI GGATG 1 cut(s) 70
FriOI GRGCYC 1 cut(s) 999
Fsp4HI GCNGC 2 cut(s) 102, 865
FspBI CTAG 2 cut(s) 105, 261
GlaI GCGC 3 cut(s) 23, 25, 49
GluI GCNGC 2 cut(s) 102, 865
GsaI CCCAGC 1 cut(s) 834
GsuI CTGGAG 1 cut(s) 13
HaeII RGCGCY 1 cut(s) 51
HaeIII GGCC 4 cut(s) 63, 338, 415, 944
HapII CCGG 2 cut(s) 45, 153
HhaI GCGC 3 cut(s) 24, 26, 50
Hin1I GRCGYC 1 cut(s) 48
Hin1II CATG 4 cut(s) 285, 611, 911, 1004
Hin6I GCGC 3 cut(s) 22, 24, 48
HinP1I GCGC 3 cut(s) 22, 24, 48
HincII GTYRAC 1 cut(s) 855
HindII GTYRAC 1 cut(s) 855
HindIII AAGCTT 1 cut(s) 565
HinfI GANTC 4 cut(s) 182, 296, 621, 763
HpaI GTTAAC 1 cut(s) 855
HpaII CCGG 2 cut(s) 45, 153
HphI GGTGA 4 cut(s) 532, 544, 818, 887
Hpy166II GTNNAC 3 cut(s) 55, 503, 855
Hpy188I TCNGA 8 cut(s) 132, 137, 203, 966, 1017, 1048, 1061, 1096
Hpy188III TCNNGA 5 cut(s) 170, 476, 535, 544, 686
Hpy8I GTNNAC 3 cut(s) 55, 503, 855
Hpy99I CGWCG 1 cut(s) 161
HpyAV CCTTC 2 cut(s) 346, 379
HpyCH4III ACNGT 1 cut(s) 161
HpyCH4IV ACGT 2 cut(s) 213, 240
HpyCH4V TGCA 5 cut(s) 404, 629, 652, 695, 867
HpyF10VI GCNNNNNNNGC 3 cut(s) 30, 432, 584
HpyF3I CTNAG 6 cut(s) 96, 380, 579, 600, 965, 1047
HpySE526I ACGT 2 cut(s) 213, 240
Hsp92I GRCGYC 1 cut(s) 48
Hsp92II CATG 4 cut(s) 285, 611, 911, 1004
HspAI GCGC 3 cut(s) 22, 24, 48
KasI GGCGCC 1 cut(s) 47
KspAI GTTAAC 1 cut(s) 855
LguI GCTCTTC 1 cut(s) 1087
LmnI GCTCC 2 cut(s) 994, 1002
Lsp1109I GCAGC 2 cut(s) 113, 851
LweI GCATC 2 cut(s) 741, 780
MaeI CTAG 2 cut(s) 105, 261
MaeII ACGT 2 cut(s) 213, 240
MaeIII GTNAC 2 cut(s) 419, 973
MboII GAAGA 5 cut(s) 139, 242, 624, 772, 1074
MfeI CAATTG 2 cut(s) 219, 345
MflI RGATCY 1 cut(s) 1017
MhlI GDGCHC 1 cut(s) 999
MlsI TGGCCA 3 cut(s) 63, 338, 944
MluCI AATT 7 cut(s) 219, 345, 394, 630, 739, 937, 1041
MluNI TGGCCA 3 cut(s) 63, 338, 944
Mly113I GGCGCC 1 cut(s) 48
MlyI GAGTC 3 cut(s) 191, 305, 630
Mox20I TGGCCA 3 cut(s) 63, 338, 944
MscI TGGCCA 3 cut(s) 63, 338, 944
MseI TTAA 3 cut(s) 393, 675, 854
Msp20I TGGCCA 3 cut(s) 63, 338, 944
MspCI CTTAAG 1 cut(s) 674
MspI CCGG 2 cut(s) 45, 153
MspR9I CCNGG 3 cut(s) 60, 153, 432
MunI CAATTG 2 cut(s) 219, 345
MvaI CCWGG 2 cut(s) 60, 432
MvnI CGCG 1 cut(s) 24
MwoI GCNNNNNNNGC 3 cut(s) 30, 432, 584
NarI GGCGCC 1 cut(s) 48
NciI CCSGG 1 cut(s) 153
NcoI CCATGG 1 cut(s) 607
NlaIII CATG 4 cut(s) 285, 611, 911, 1004
NlaIV GGNNCC 3 cut(s) 49, 169, 1019
NmeAIII GCCGAG 2 cut(s) 205, 1014
PalAI GGCGCGCC 1 cut(s) 22
PauI GCGCGC 1 cut(s) 22
PceI AGGCCT 1 cut(s) 415
PciSI GCTCTTC 1 cut(s) 1087
PcsI WCGNNNNNNNCGW 1 cut(s) 183
PfeI GAWTC 1 cut(s) 763
PflFI GACNNNGTC 1 cut(s) 455
PkrI GCNGC 2 cut(s) 103, 866
PleI GAGTC 3 cut(s) 190, 304, 629
PluTI GGCGCC 1 cut(s) 51
PpsI GAGTC 3 cut(s) 190, 304, 629
Psp124BI GAGCTC 1 cut(s) 999
Psp6I CCWGG 2 cut(s) 58, 430
PspFI CCCAGC 1 cut(s) 830
PspGI CCWGG 2 cut(s) 58, 430
PspN4I GGNNCC 3 cut(s) 49, 169, 1019
PspPI GGNCC 2 cut(s) 167, 329
PstNI CAGNNNCTG 1 cut(s) 920
PsuI RGATCY 1 cut(s) 1017
PsyI GACNNNGTC 1 cut(s) 455
PteI GCGCGC 1 cut(s) 22
RsaI GTAC 2 cut(s) 704, 906
RsaNI GTAC 2 cut(s) 703, 905
SacI GAGCTC 1 cut(s) 999
SapI GCTCTTC 1 cut(s) 1087
SaqAI TTAA 3 cut(s) 393, 675, 854
SatI GCNGC 2 cut(s) 102, 865
Sau96I GGNCC 2 cut(s) 167, 329
SchI GAGTC 3 cut(s) 191, 305, 630
ScrFI CCNGG 3 cut(s) 60, 153, 432
SduI GDGCHC 1 cut(s) 999
SfaNI GCATC 2 cut(s) 741, 780
SfoI GGCGCC 1 cut(s) 49
SgsI GGCGCGCC 1 cut(s) 22
SinI GGWCC 2 cut(s) 167, 329
SmlI CTYRAG 3 cut(s) 542, 568, 674
SmoI CTYRAG 3 cut(s) 542, 568, 674
Sse9I AATT 7 cut(s) 219, 345, 394, 630, 739, 937, 1041
SseBI AGGCCT 1 cut(s) 415
SsiI CCGC 2 cut(s) 120, 304
SspDI GGCGCC 1 cut(s) 47
SspI AATATT 1 cut(s) 871
SspMI CTAG 2 cut(s) 105, 261
SstI GAGCTC 1 cut(s) 999
StuI AGGCCT 1 cut(s) 415
StyD4I CCNGG 3 cut(s) 58, 151, 430
StyI CCWWGG 2 cut(s) 607, 1072
TaaI ACNGT 1 cut(s) 161
TaiI ACGT 2 cut(s) 216, 243
TaqI TCGA 6 cut(s) 255, 445, 459, 534, 735, 1116
TaqII GACCGA 1 cut(s) 155
TasI AATT 7 cut(s) 219, 345, 394, 630, 739, 937, 1041
TatI WGTACW 1 cut(s) 904
TfiI GAWTC 1 cut(s) 763
Tru1I TTAA 3 cut(s) 393, 675, 854
Tru9I TTAA 3 cut(s) 393, 675, 854
TscAI CASTG 1 cut(s) 306
TseI GCWGC 2 cut(s) 101, 864
TspDTI ATGAA 3 cut(s) 354, 581, 1074
TspGWI ACGGA 1 cut(s) 175
TspRI CASTG 1 cut(s) 306
Tth111I GACNNNGTC 1 cut(s) 455
Vha464I CTTAAG 1 cut(s) 674
VpaK11BI GGWCC 2 cut(s) 167, 329
XapI RAATTY 1 cut(s) 937
XspI CTAG 2 cut(s) 105, 261
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.