Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0009443

Physical Location & Seq

Genomic Coordinates Reverse (-)

17627165 .. 17630730

Gene Structure 3566 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG196800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGGCTTCCCAGCTATTGAGGCGCGTAATCGGAAGCCGCTCCACCCACTTTCTCTCCGGCGCCGCGAATCCCTCCCCGACCTTGCTCTCATCGTCGTCTCCGGCAGCTAGGGTTTTCTCATCTACTTCCACTCCGATCACTGCCACCCTCTTCCCCGGGGACGGTATCGGCCCCGAGATCGCCGAGTCCGTCAAACAGATATTCAGAGAAGCTGAAGTCCCAATTGAATGGGAAGAGCACTATGTTGGGGAGCAAATAGATCCCAGGACTCAGAGTTTTCTGACATGGGAAAGTTTAGAGTCGGTACGAAGGAATAAGGTGGGCTTGAAAGGGCCGATGGCCACACCAATTGGGAAGGGTCATCGTTCATTGAATCTTACACTGAGGAAAGAACTGAATTTGTATGCAAATGTCAGACCTTGTTACAGCCTTCCTGGCTATAAGACTCGATATGATGATGTGGATCTTATCACTATCCGTGAGAATACGGAGGGGGAATACAGTGGACTTGAACATCAAGTGGTGAGAGGTGTTGTTGAGAGCCTCAAGATCATTACCCGTCAAGCTAGCTTGAGGGTGGCTGAGTATGCTTTTCATTATGCCAAGGCCCATGGAAGACAAAGAGTGTCTGCAATACACAAAGCAAATATAATGCAGAAAACCGACGGTCTTTTTCTCAAGTGTTGCCGCGAAGTTGCAGAGAAGTACCCTGATATAAAGTATGAGGAAGTTGTCATTGATAATTGCTGTATGATGCTTGTGAAGAATCCAGCACTTTTTGATGTGCTAGTGATGCCTAACCTCTATGGTGATATTATTAGTGACCTTTGCGCTGGGTTGATAGGGGGTTTGGGCTTAACACCAAGCTGCAATATTGGTGAGGGAGGTATTGCCCTTGCTGAAGCTGTACATGGATCGGCACCTGATATTGCTGGAAAGGTGAACATTCTTGAACCTTGTGAAGTTCAATATCCTACTACTGAGCACTGTCATGGATCCCATTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004448 GO:0004449 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0006102 GO:0008144 GO:0008150 GO:0008152 GO:0008270 GO:0009060 GO:0009507 GO:0009536 GO:0009987 GO:0015980 GO:0016491 GO:0016614 GO:0016616 GO:0016999 GO:0017076 GO:0017144 GO:0019752 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0046872 GO:0046914 GO:0055114 GO:0071704 GO:0072350 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00020 ko01100 ko01110 ko01120 ko01130 ko01200 ko01210 ko01230 map00020 map01100 map01110 map01120 map01130 map01200 map01210 map01230

Pfam Domains

Protein Families

Iso_dh

Protein Analysis

335

Amino Acids

36.74

Weight (kDa)

6.27

Isoelectric Point (pI)

47.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Iso_dh	PF00180	49 - 314	3.9e-87	Isocitrate/isopropylmalate dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009443)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09810 AT5G03290
fragaria_vesca	FvH4_6g16070 FvH4_6g16070 FvH4_6g16070 FvH4_6g16070
malus_domestica	MD04G1096100.v1.1 MD12G1116100.v1.1
prunus_persica	Prupe.6G235200_v2.0.a1
pyrus_communis	pycom04g09100
rosa_chinensis	RchiOBHm_Chr3g0469901
rosa_laevigata	RLG00000024314
rosa_multiflora	Rmu_sc0009708.1_g000001
rosa_roxburghii	Rroxscaffold_6G00411380
rosa_rugosa	Rorug03G0105200 Rorug03G0105300 Rorug03G0105400
rosa_samantha	Rh3AG154300 Rh3BG178400 Rh3CG169000 Rh3DG196800
rosa_wichuraiana	Rw3G014530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	59, 919
AccBSI	CCGCTC	1 cut(s)	39
AccII	CGCG	3 cut(s)	24, 65, 690
AciI	CCGC	3 cut(s)	37, 63, 688
AclWI	GGATC	5 cut(s)	254, 471, 922, 990, 1003
AcoI	YGGCCR	1 cut(s)	339
AcsI	RAATTY	1 cut(s)	397
AcuI	CTGAAG	2 cut(s)	234, 921
AcyI	GRCGYC	1 cut(s)	60
AfaI	GTAC	3 cut(s)	306, 707, 909
AfiI	CCNNNNNNNGG	1 cut(s)	161
AgsI	TTSAA	6 cut(s)	227, 328, 373, 512, 953, 968
AjnI	CCWGG	2 cut(s)	263, 433
AluBI	AGCT	7 cut(s)	13, 107, 212, 566, 570, 867, 905
AluI	AGCT	7 cut(s)	13, 107, 212, 566, 570, 867, 905
Alw21I	GWGCWC	2 cut(s)	240, 987
Alw26I	GTCTC	1 cut(s)	102
AlwI	GGATC	5 cut(s)	254, 471, 922, 990, 1003
Ama87I	CYCGRG	2 cut(s)	155, 173
AoxI	GGCC	4 cut(s)	169, 332, 339, 606
ApeKI	GCWGC	2 cut(s)	104, 867
ApoI	RAATTY	1 cut(s)	397
AspLEI	GCGC	3 cut(s)	24, 62, 833
AspS9I	GGNCC	3 cut(s)	170, 332, 607
AsuC2I	CCSGG	2 cut(s)	156, 157
AsuHPI	GGTGA	4 cut(s)	535, 821, 890, 952
AsuNHI	GCTAGC	1 cut(s)	566
AvaI	CYCGRG	2 cut(s)	155, 173
BalI	TGGCCA	1 cut(s)	341
BamHI	GGATCC	1 cut(s)	995
BanI	GGYRCC	2 cut(s)	59, 919
BbsI	GAAGAC	1 cut(s)	622
Bbv12I	GWGCWC	2 cut(s)	240, 987
BbvI	GCAGC	2 cut(s)	116, 854
BccI	CCATC	1 cut(s)	331
BciT130I	CCWGG	2 cut(s)	265, 435
BcnI	CCSGG	2 cut(s)	156, 157
BcoDI	GTCTC	1 cut(s)	102
BfaI	CTAG	3 cut(s)	108, 567, 788
BfoI	RGCGCY	1 cut(s)	63
BglI	GCCNNNNNGGC	1 cut(s)	435
BisI	GCNGC	5 cut(s)	37, 63, 105, 688, 868
BlsI	GCNGC	5 cut(s)	38, 64, 106, 689, 869
Bme1390I	CCNGG	4 cut(s)	156, 157, 265, 435
BmeT110I	CYCGRG	2 cut(s)	155, 173
BmgT120I	GGNCC	3 cut(s)	170, 332, 607
BmiI	GGNNCC	4 cut(s)	61, 172, 921, 997
BmrFI	CCNGG	4 cut(s)	156, 157, 265, 435
BmsI	GCATC	2 cut(s)	744, 783
BmtI	GCTAGC	1 cut(s)	570
BpiI	GAAGAC	1 cut(s)	622
BpuEI	CTTGAG	3 cut(s)	530, 592, 662
BpuMI	CCSGG	2 cut(s)	156, 157
BsaBI	GATNNNNATC	1 cut(s)	462
BsaHI	GRCGYC	1 cut(s)	60
BsaJI	CCNNGG	6 cut(s)	154, 155, 156, 263, 603, 610
BsaXI	ACNNNNNCTCC	4 cut(s)	38, 68, 115, 145
Bsc4I	CCNNNNNNNGG	1 cut(s)	161
Bse8I	GATNNNNATC	1 cut(s)	462
BseBI	CCWGG	2 cut(s)	265, 435
BseDI	CCNNGG	6 cut(s)	154, 155, 156, 263, 603, 610
BseJI	GATNNNNATC	1 cut(s)	462
BseLI	CCNNNNNNNGG	1 cut(s)	161
BseMII	CTCAG	4 cut(s)	284, 374, 573, 972
BseXI	GCAGC	2 cut(s)	116, 854
BseYI	CCCAGC	2 cut(s)	9, 833
Bsh1236I	CGCG	3 cut(s)	24, 65, 690
BshFI	GGCC	4 cut(s)	171, 334, 341, 608
BshNI	GGYRCC	2 cut(s)	59, 919
BsiHKAI	GWGCWC	2 cut(s)	240, 987
BsiHKCI	CYCGRG	2 cut(s)	155, 173
BsiSI	CCGG	3 cut(s)	57, 101, 156
BslFI	GGGAC	2 cut(s)	173, 203
BslI	CCNNNNNNNGG	1 cut(s)	161
BsmAI	GTCTC	1 cut(s)	102
BsmBI	CGTCTC	1 cut(s)	102
BsmFI	GGGAC	2 cut(s)	173, 203
BsnI	GGCC	4 cut(s)	171, 334, 341, 608
BsoBI	CYCGRG	2 cut(s)	155, 173
Bsp1286I	GDGCHC	2 cut(s)	240, 987
Bsp1407I	TGTACA	1 cut(s)	907
Bsp143I	GATC	7 cut(s)	135, 177, 259, 463, 549, 914, 995
Bsp19I	CCATGG	1 cut(s)	610
BspACI	CCGC	3 cut(s)	37, 63, 688
BspANI	GGCC	4 cut(s)	171, 334, 341, 608
BspCNI	CTCAG	4 cut(s)	283, 375, 574, 973
BspFNI	CGCG	3 cut(s)	24, 65, 690
BspLI	GGNNCC	4 cut(s)	61, 172, 921, 997
BspOI	GCTAGC	1 cut(s)	570
BspPI	GGATC	5 cut(s)	254, 471, 922, 990, 1003
BspQI	GCTCTTC	1 cut(s)	228
BspT107I	GGYRCC	2 cut(s)	59, 919
BsrBI	CCGCTC	1 cut(s)	39
BsrGI	TGTACA	1 cut(s)	907
BssECI	CCNNGG	6 cut(s)	154, 155, 156, 263, 603, 610
BssMI	GATC	7 cut(s)	135, 177, 259, 463, 549, 914, 995
BssNI	GRCGYC	1 cut(s)	60
BssT1I	CCWWGG	2 cut(s)	603, 610
Bst2UI	CCWGG	2 cut(s)	265, 435
Bst4CI	ACNGT	4 cut(s)	164, 503, 668, 989
Bst6I	CTCTTC	2 cut(s)	155, 228
BstACI	GRCGYC	1 cut(s)	60
BstAUI	TGTACA	1 cut(s)	907
BstC8I	GCNNGC	1 cut(s)	568
BstDEI	CTNAG	4 cut(s)	270, 383, 582, 981
BstDSI	CCRYGG	1 cut(s)	610
BstFNI	CGCG	3 cut(s)	24, 65, 690
BstH2I	RGCGCY	1 cut(s)	63
BstHHI	GCGC	3 cut(s)	24, 62, 833
BstKTI	GATC	7 cut(s)	138, 180, 262, 466, 552, 917, 998
BstMAI	GTCTC	1 cut(s)	102
BstMBI	GATC	7 cut(s)	135, 177, 259, 463, 549, 914, 995
BstMWI	GCNNNNNNNGC	4 cut(s)	19, 435, 587, 793
BstNI	CCWGG	2 cut(s)	265, 435
BstSCI	CCNGG	4 cut(s)	154, 155, 263, 433
BstUI	CGCG	3 cut(s)	24, 65, 690
BstV1I	GCAGC	2 cut(s)	116, 854
BstV2I	GAAGAC	1 cut(s)	622
BstX2I	RGATCY	3 cut(s)	259, 463, 995
BstXI	CCANNNNNNTGG	1 cut(s)	228
BstYI	RGATCY	3 cut(s)	259, 463, 995
BsuRI	GGCC	4 cut(s)	171, 334, 341, 608
BtgI	CCRYGG	1 cut(s)	610
BtsI	GCAGTG	1 cut(s)	138
BtsIMutI	CAGTG	4 cut(s)	138, 380, 508, 985
Cac8I	GCNNGC	1 cut(s)	568
CfoI	GCGC	3 cut(s)	24, 62, 833
Cfr13I	GGNCC	3 cut(s)	170, 332, 607
Cfr9I	CCCGGG	1 cut(s)	155
Csp6I	GTAC	3 cut(s)	305, 706, 908
CspCI	CAANNNNNGTGG	2 cut(s)	331, 366
CviAII	CATG	4 cut(s)	285, 611, 911, 992
CviQI	GTAC	3 cut(s)	305, 706, 908
DdeI	CTNAG	4 cut(s)	270, 383, 582, 981
DinI	GGCGCC	1 cut(s)	61
DpnI	GATC	7 cut(s)	137, 179, 261, 465, 551, 916, 997
DpnII	GATC	7 cut(s)	135, 177, 259, 463, 549, 914, 995
EaeI	YGGCCR	1 cut(s)	339
Eam1104I	CTCTTC	2 cut(s)	155, 228
EarI	CTCTTC	2 cut(s)	155, 228
Eco130I	CCWWGG	2 cut(s)	603, 610
Eco57I	CTGAAG	2 cut(s)	234, 921
Eco88I	CYCGRG	2 cut(s)	155, 173
EcoRII	CCWGG	2 cut(s)	263, 433
EcoT14I	CCWWGG	2 cut(s)	603, 610
EgeI	GGCGCC	1 cut(s)	61
EheI	GGCGCC	1 cut(s)	61
ErhI	CCWWGG	2 cut(s)	603, 610
Esp3I	CGTCTC	1 cut(s)	102
FaeI	CATG	4 cut(s)	288, 614, 914, 995
FalI	AAGNNNNNCTT	2 cut(s)	308, 340
FaqI	GGGAC	2 cut(s)	173, 203
FatI	CATG	4 cut(s)	284, 610, 910, 991
Fnu4HI	GCNGC	5 cut(s)	37, 63, 105, 688, 868
Fsp4HI	GCNGC	5 cut(s)	37, 63, 105, 688, 868
FspBI	CTAG	3 cut(s)	108, 567, 788
GlaI	GCGC	3 cut(s)	23, 61, 832
GluI	GCNGC	5 cut(s)	37, 63, 105, 688, 868
GsaI	CCCAGC	2 cut(s)	13, 837
HaeII	RGCGCY	1 cut(s)	63
HaeIII	GGCC	4 cut(s)	171, 334, 341, 608
HapII	CCGG	3 cut(s)	57, 101, 156
HhaI	GCGC	3 cut(s)	24, 62, 833
Hin1I	GRCGYC	1 cut(s)	60
Hin1II	CATG	4 cut(s)	288, 614, 914, 995
Hin6I	GCGC	3 cut(s)	22, 60, 831
HinP1I	GCGC	3 cut(s)	22, 60, 831
HinfI	GANTC	7 cut(s)	67, 185, 268, 299, 373, 445, 766
HpaII	CCGG	3 cut(s)	57, 101, 156
HphI	GGTGA	4 cut(s)	535, 821, 890, 952
Hpy166II	GTNNAC	2 cut(s)	506, 943
Hpy188I	TCNGA	6 cut(s)	32, 135, 206, 273, 282, 416
Hpy188III	TCNNGA	2 cut(s)	547, 950
Hpy8I	GTNNAC	2 cut(s)	506, 943
Hpy99I	CGWCG	2 cut(s)	97, 668
HpyAV	CCTTC	3 cut(s)	303, 349, 440
HpyCH4III	ACNGT	4 cut(s)	164, 503, 668, 989
HpyCH4V	TGCA	5 cut(s)	407, 632, 655, 698, 870
HpyF10VI	GCNNNNNNNGC	4 cut(s)	19, 435, 587, 793
HpyF3I	CTNAG	4 cut(s)	270, 383, 582, 981
Hsp92I	GRCGYC	1 cut(s)	60
Hsp92II	CATG	4 cut(s)	288, 614, 914, 995
HspAI	GCGC	3 cut(s)	22, 60, 831
KasI	GGCGCC	1 cut(s)	59
Kzo9I	GATC	7 cut(s)	135, 177, 259, 463, 549, 914, 995
LguI	GCTCTTC	1 cut(s)	228
LmnI	GCTCC	2 cut(s)	44, 250
Lsp1109I	GCAGC	2 cut(s)	116, 854
LweI	GCATC	2 cut(s)	744, 783
MaeI	CTAG	3 cut(s)	108, 567, 788
MaeIII	GTNAC	2 cut(s)	422, 821
MalI	GATC	7 cut(s)	137, 179, 261, 465, 551, 916, 997
MbiI	CCGCTC	1 cut(s)	39
MboI	GATC	7 cut(s)	135, 177, 259, 463, 549, 914, 995
MboII	GAAGA	4 cut(s)	142, 245, 627, 775
MfeI	CAATTG	2 cut(s)	222, 348
MflI	RGATCY	3 cut(s)	259, 463, 995
MhlI	GDGCHC	2 cut(s)	240, 987
MlsI	TGGCCA	1 cut(s)	341
MluCI	AATT	4 cut(s)	222, 348, 397, 742
MluNI	TGGCCA	1 cut(s)	341
Mly113I	GGCGCC	1 cut(s)	60
MlyI	GAGTC	4 cut(s)	194, 262, 308, 439
Mox20I	TGGCCA	1 cut(s)	341
MscI	TGGCCA	1 cut(s)	341
MseI	TTAA	1 cut(s)	857
MslI	CAYNNNNRTG	1 cut(s)	990
Msp20I	TGGCCA	1 cut(s)	341
MspI	CCGG	3 cut(s)	57, 101, 156
MspR9I	CCNGG	4 cut(s)	156, 157, 265, 435
MunI	CAATTG	2 cut(s)	222, 348
MvaI	CCWGG	2 cut(s)	265, 435
MvnI	CGCG	3 cut(s)	24, 65, 690
MwoI	GCNNNNNNNGC	4 cut(s)	19, 435, 587, 793
NarI	GGCGCC	1 cut(s)	60
NciI	CCSGG	2 cut(s)	156, 157
NcoI	CCATGG	1 cut(s)	610
NdeII	GATC	7 cut(s)	135, 177, 259, 463, 549, 914, 995
NheI	GCTAGC	1 cut(s)	566
NlaIII	CATG	4 cut(s)	288, 614, 914, 995
NlaIV	GGNNCC	4 cut(s)	61, 172, 921, 997
NmeAIII	GCCGAG	1 cut(s)	208
NmuCI	GTSAC	1 cut(s)	821
PciSI	GCTCTTC	1 cut(s)	228
PcsI	WCGNNNNNNNCGW	1 cut(s)	186
PfeI	GAWTC	3 cut(s)	67, 373, 766
PkrI	GCNGC	5 cut(s)	38, 64, 106, 689, 869
PleI	GAGTC	4 cut(s)	193, 262, 307, 439
PluTI	GGCGCC	1 cut(s)	63
PpsI	GAGTC	4 cut(s)	193, 262, 307, 439
Psp6I	CCWGG	2 cut(s)	263, 433
PspFI	CCCAGC	2 cut(s)	9, 833
PspGI	CCWGG	2 cut(s)	263, 433
PspN4I	GGNNCC	4 cut(s)	61, 172, 921, 997
PspPI	GGNCC	3 cut(s)	170, 332, 607
PsuI	RGATCY	3 cut(s)	259, 463, 995
RsaI	GTAC	3 cut(s)	306, 707, 909
RsaNI	GTAC	3 cut(s)	305, 706, 908
RseI	CAYNNNNRTG	1 cut(s)	990
SapI	GCTCTTC	1 cut(s)	228
SaqAI	TTAA	1 cut(s)	857
SatI	GCNGC	5 cut(s)	37, 63, 105, 688, 868
Sau3AI	GATC	7 cut(s)	135, 177, 259, 463, 549, 914, 995
Sau96I	GGNCC	3 cut(s)	170, 332, 607
SchI	GAGTC	4 cut(s)	194, 262, 308, 439
ScrFI	CCNGG	4 cut(s)	156, 157, 265, 435
SduI	GDGCHC	2 cut(s)	240, 987
SfaNI	GCATC	2 cut(s)	744, 783
SfoI	GGCGCC	1 cut(s)	61
SmaI	CCCGGG	1 cut(s)	157
SmiMI	CAYNNNNRTG	1 cut(s)	990
SmlI	CTYRAG	3 cut(s)	545, 571, 677
SmoI	CTYRAG	3 cut(s)	545, 571, 677
Sse9I	AATT	4 cut(s)	222, 348, 397, 742
SsiI	CCGC	3 cut(s)	37, 63, 688
SspDI	GGCGCC	1 cut(s)	59
SspI	AATATT	1 cut(s)	874
SspMI	CTAG	3 cut(s)	108, 567, 788
StyD4I	CCNGG	4 cut(s)	154, 155, 263, 433
StyI	CCWWGG	2 cut(s)	603, 610
TaaI	ACNGT	4 cut(s)	164, 503, 668, 989
TaqI	TCGA	1 cut(s)	448
TasI	AATT	4 cut(s)	222, 348, 397, 742
TatI	WGTACW	1 cut(s)	907
TauI	GCSGC	3 cut(s)	39, 65, 690
TfiI	GAWTC	3 cut(s)	67, 373, 766
Tru1I	TTAA	1 cut(s)	857
Tru9I	TTAA	1 cut(s)	857
TscAI	CASTG	4 cut(s)	145, 387, 508, 992
TseFI	GTSAC	1 cut(s)	821
TseI	GCWGC	2 cut(s)	104, 867
Tsp45I	GTSAC	1 cut(s)	821
TspDTI	ATGAA	2 cut(s)	357, 584
TspGWI	ACGGA	3 cut(s)	178, 467, 503
TspMI	CCCGGG	1 cut(s)	155
TspRI	CASTG	4 cut(s)	145, 387, 508, 992
XapI	RAATTY	1 cut(s)	397
XmaI	CCCGGG	1 cut(s)	155
XspI	CTAG	3 cut(s)	108, 567, 788

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.