Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0009443

Physical Location & Seq

Genomic Coordinates Forward (+)

8374126 .. 8400057

Gene Structure 25932 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0105300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4992 bp

ATGGCTTTCATGGCGGTTTTGGAGTCAGATCTTCGCGCTCTCTCCGCCGAGGCTCGGCGTCGCTACCCTGCTGTCAAAGACGGCGCTGAGCACGCAATTATAAAGCTCCGTTCTTTGTCAAGTCCTGGTGAGATTGCGCAGAATGAGGACATATTGAGAATCTTCCTGATGGCTTGTGAGGTTAAAACTGTGAAGTTGAGTGTTATTGGACTGTCTTGTCTACAAAAGCTTATATCCCATGATGCTGTTGCTTCATCAGCTCTGCACGAGATACTTTGTACATTGAAGGATCATGCTGAAATGACCGATGAGAGTGTTCAACTTAAGACCCTGCAGACTGTATTGATAATATTGCAGTCACCTTTACACCCTCAGAATGAGGACGATATGGCTCAAGCTCTTGGTATATGCCTTCGGCTTCTCGAAAATAGGTCCCCTGACAGTGTGCGCAATACTGCTGCAGCTACTTTCAGGCAAGCTGTAGCACTGATTTTTGATCATGTGGTTTGCGCTGAGACTCTTCCTGCCGGCAAGCTTAGTTCTGGAGGTTACATCTCTCGGACCAGTCCAGTTAGTGGTGACGTTAGTTGCAGCATAAATCTTTCAGAGTCTTTGGATGGATCTGTTTCTGGACGGTCATCATTGATGAGGGAGACACTAACTAAAGCTGGAAAGCTTGGGCTTCGTCTGCTTGAAGACCTGACAGCTCTTGCTGCAGGTGGATCTGCAATCTGGTTACGTGTCAGTTCTCTACAGCGGTCCTTTGCACTTGACATACTGGAGTTTGTTCTGTCCAACTATGTGGCTGTTTTCCGAACCTTGCTTCCTTATGAGCAGGTCCTGCGTTACCAGATATGTTCAATTCTAATGACCTCACTTCGTACAAATGCGGAGCTTGAAGGGGAAGCAGGAGAGCCGTCATTTCGACGCTTGGTCTTGCGGTCAGTTGCCCATATTATCCGGCTTTACAGTTCATCCCTTATCACTGAATGTGAGGTCTTCCTCAGTATGTTGGTGAAGGTCACATTTCTTGATTTGCCATTATGGCATCGTATTCTTGTTCTTGAGATCCTGAGGGGCTTTTGTGTGGAGGCAAGGACATTGCGGATTCTTTTCCAAAACTTTGATATGAATCCCAAGAACACCAATGTTGTGGAGGGCATGGTGAAAGCTCTTGCTAGAGTAGTTTCAAGTGTACAGGTTCAAGAGACTAGTGAAGAGAGCCTGGCAGCTGTTGCAGGGATGTTTAACAGCAAAGCTAAAGGAGTTGAGTGGAGCCTTGATAATGATGCATCCAATGCTGCAGTATTGGTTGCTAGTGAAGCTCATTGTATAACCTTGGCAGTTGAAGGTCTGCTCGGTGTTGTCTTCACAGTAGCTACATTGACGGATGAAGCAGTAGATTCCGGAGAGATTGAATCCCCCAGATGTGACTATGATCCACCTGCAAAGAAGACTGGAAATGCTGCTCTTCTCTGTCTCTCAATGGTTGATTCATTATGGTTGACGATACTAGATGCGTTCTCCTTTATTTTGTCAAGGTCACAAGGTGAGGCTATTGTGTTGGAAATACTGAAGGGATATCAGGCCTTCACCCAGGCATGCGGAGTTCTTGGTGCTGTAGAACCTTTGAACTCCTTTTTAGCATCACTTTGCAAATTTACAATCATTTTCCCCGTTGAAGCAGAAAAAAGGAGCATTACTTTACAATCTCCTGGGTCCAAACGGTCTGAACAAGTAGTTGATCAAAGGGAAAGTGTTGTTCTCACTCCTAAGAATGTCCAGGCCTTAAGAACTCTCTTCAACATTGCTCATAGATTACACAATGTGTTGGGCCCATCCTGGGTTTTGGTATTAGAAACCCTCGCAGCCCTAGACCGCGCAATCCATTCTCCGCATGCTACCACACAGGAGGTGTCCACGGCTGTGCCAAAACTTACAAGAGAATCATCTGGTCAATCCAGTGACTTAAATATTCTTTCATCCTTGAATTCTCAGCTGTTTGAGAGCTCAGCACTGATGCACATATCTGCAGTAAAATCCCTTCTTTGTGCACTGGGCCAACTGTCACAGCAATGCATGGCTGGGATTTCAAATGGATCTGTACCTGCTTCAAGTCAAAAAGTTGGAAACATAAACTTTTCAGTGGAGAGAATGATATCCATCCTAGTCAATAATCTACACAGAGTGGAGCCATTGTGGGATCAAGTTGTTGGCCACTTTCTTGAGCTTGCAGAAAATTCTAACCAGCATTTACGTAATATGGCCCTTGATGCATTAGATGAATCAATATGTGCTGTTTTAGGTTCAGACAAGTTCCCAGACAACACAACAAGCAGATTCAATGGCTCATCTCAGAGTATGGATACTGGGGTTACAGATTTGGGATCACTTGAGTGTGCTGTCATATCTCCACTAAGGGTTCTTTATCTTTCTACTGGTGTTGACTCACGTACTGGATCTTTGAAAATTCTTCTGCATGTTTTAGAGAGGCATGGGGAGAAATTACACTACAGTTGGCCAAATATTCTTGAAATGTTGAGGTCTGTAGCGGACTCTTCAGATAAGGAACTCATTACTCTGGGCTTTCAGTGCCTGCGGGTGATTATGAACGACGGACTTTCTACTATACCTGCAGACTGCCTTCAAGTATGTGTAGATGTGACTGGAGCATACAGTGCTCAAAAGACAGAGCTGAATATAAGTCTGACAGCAATAGGCCTCTTATGGACAACAACTGACTTTATTGTGAAAGCTCTAATCCATGGACCTGGGGCGGAGAAGAAAACAGGGATTTCTGATGTGCATCCTATTCTAAAGCAGTTGGATGGTGACATACCAAAAGAACAAACAATCAATGGCTCAGATAATGCCAATGAGCAAGTTCCCTCATTAACTATAGTTGACAGTGACAGGCTGCTTTTCTCTGTTTTCTCATTACTTCAAAAGCTTGGAGCCGATGAGAGGCCAGAGGTTAGAAATTCAGCGGTCAGGACATTGTTTCAGACACTTGGAAGTCACGGGCAAAAACTTTCGAAAAGCATGTGGGAAGATTGCCTTTGGAATTATGTGTTTCCTACACTAGATCGTGCTTCTCACATGGCTGCAACTTCATCGAAAGATGAATGGCATGGGAAAGAACTTGGAACTCGAGGAGGAAAAGCAGTTCATATGCTCATACATCACAGTCGCAACACAGCTCAGAAACAGTGGGATGAGACATTAGTACTTGTCCTTGGTGGTGTAGCCCGTATTCTACGCTCATTCTTTCCTTTTCTTAGAAGTTTAAGCAATTTTTGGTCAGGATGGGAGTCTTTGCTTTTATTTGTGAAGAATAGTGTATTAAATGGAAGCAAAGAGGTTGCGCTTGCTGCAATAAATTGCTTACAGACACCTATTCTTTCTCATTCTTCCAAGGGGAACTTGCCGATGCCTTATCTTGAATCAGTACTTGATGTTTACGAGCTTGTTCTTCAAAAGTCAACAAACCTGAGTGGAAATGCAGCCAGCAAGGTGAAGCAGGAGATTTTGCACAGTCTTGGGGAACTATATGTGCAAGCACAAAGGATGTTTGATGATCGGTTGTATACACAGTTGCTTGCAGTCATACGCTTGGCAATGAAACATGCCATAGTTGCCAACGATAACTGTGAAACTGAATATGGAAATGTTCCACCTGTACTACGTACTGTGCTTGAAATCATTCCAATGTTATGTCCAACTGAGCGCATTTCTTCAATGTGGCTTATTCTTCTTCGGGATTTATCTCAATTTCTGCCAAGACTGAATTCTACCGTACAAATTGAGGAAGATGATGCAGAGGAAGCTAGCACTAGTGACCGAGTTCCAGATACTCACTCGAAAATAAAACATGAAAGACCTAATGGGACGGCTTCGATGACTCCAGGAGTAGGAGATTCTCCTAGTTCTAGATTAAAGACATCCGTAACAACCTGCATTCCTAATTATATGTTTGCGGAAAAGCTTGTTCCCTTGTTGGTAGATCTTTTCCTACGGGCTCCAGCAGTTGAAAAGTATATCTTGTATCCTGAAATTATTCAAAGTCTTGGGAGGTGTATGACTACAAGAAGAGACAATCCAGATGGTTCTCTTTGGAGATTAGCTGTTGAAGGCTTCAATCGCATTCTTGTTGATGATGCCAGCAACTCGACTGTAAATGCTGCATCAGATTCAGGTGCTAGTAAGCCTGCAAGAACACGTATATGGAAGGAAGTTGCTGATGTTTATGAAGTATTCCTTGTGGGTTATTGTGGCCGAGCTCTTCCTTCTGATTCGTTCTCAACAGTGGATGTAAAAGCTGACGAGTCCCTTGAGATGACTATCTTGCACATTCTTGGCGACAAGATTTTGAAGTCACCAATTGATGCACCTATCGATATTTTGCAGCGTCTCGTTTCCACCTTGGACCGTTGTGCTTCACGTACTGGTTCTTTACCTGTTGATTTTGTGGAACGTATGCCTTCCCACTGCAGCAGGTTTTCCTTGATTTGCTTACAGAAGTTGTTTTCCTTGAGCAGTTATGACACCAAAGACCATGATTGGAATTCAGCGAGAGCTGAGGTGAGTAAAATTGCAATCATGGTACTGATGATGAGATGTGAATACATCTTAAGCAGATTTCTGAATGACGAAAATGATTTAGGTGGACGCCCATTGCCAGCAGCAAGGCTTGAAGAAATCATATATGTTCTTGAAGAGTTGGGCCAACTAGTAATTCATTCAGATACTGCATCCATTCTTCCCTTGCAACCATATTTGAAAGGTGCCCTATCGAGAGAAAAGAATCATGATAACCGTTTGCACCTTCTTGTTCTATTTCCATCCTTTTCTGAGCTCATAGTGTCAAGAGAAGCAAAAGTAAGAGCATCGGTGCAAGTCTTGTTTAGACTCATCAGCAAAGAATTGTCACTTGAAAGAGTTTCCCTTACCAGTCAAGCTGTGGAAGAATCTCAAAGGATACAGCAGTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004448 GO:0004449 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0006102 GO:0008144 GO:0008150 GO:0008152 GO:0008270 GO:0009060 GO:0009507 GO:0009536 GO:0009987 GO:0015980 GO:0016491 GO:0016614 GO:0016616 GO:0016999 GO:0017076 GO:0017144 GO:0019752 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0046872 GO:0046914 GO:0055114 GO:0071704 GO:0072350 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00020 ko01100 ko01110 ko01120 ko01130 ko01200 ko01210 ko01230 map00020 map01100 map01110 map01120 map01130 map01200 map01210 map01230

Pfam Domains

Protein Families

Iso_dh

Protein Analysis

1663

Amino Acids

183.01

Weight (kDa)

5.78

Isoelectric Point (pI)

46.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DCB	PF16213	3 - 169	1.3e-38	Mon2/Sec7/BIG1-like, dimerisation and cyclophilin-binding domain
Sec7-like_HUS	PF12783	229 - 384	7.6e-20	Mon2/Sec7/BIG1-like, HUS domain
Mon2_C	PF16206	872 - 1158	1.5e-49	C-terminal region of Mon2 protein
Mon2_C	PF16206	1322 - 1579	5.5e-15	C-terminal region of Mon2 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009443)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09810 AT5G03290
fragaria_vesca	FvH4_6g16070 FvH4_6g16070 FvH4_6g16070 FvH4_6g16070
malus_domestica	MD04G1096100.v1.1 MD12G1116100.v1.1
prunus_persica	Prupe.6G235200_v2.0.a1
pyrus_communis	pycom04g09100
rosa_chinensis	RchiOBHm_Chr3g0469901
rosa_laevigata	RLG00000024314
rosa_multiflora	Rmu_sc0009708.1_g000001
rosa_roxburghii	Rroxscaffold_6G00411380
rosa_rugosa	Rorug03G0105200 Rorug03G0105300 Rorug03G0105400
rosa_samantha	Rh3AG154300 Rh3BG178400 Rh3CG169000 Rh3DG196800
rosa_wichuraiana	Rw3G014530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	101
AarI	CACCTGC	2 cut(s)	707, 1453
AasI	GACNNNNNNGTC	1 cut(s)	216
Acc16I	TGCGCA	2 cut(s)	138, 449
Acc36I	ACCTGC	7 cut(s)	707, 826, 1453, 2116, 2641, 3962, 4485
AccB1I	GGYRCC	1 cut(s)	4784
AccB7I	CCANNNNNTGG	1 cut(s)	575
AccI	GTMKAC	2 cut(s)	220, 3587
AccII	CGCG	2 cut(s)	36, 1881
AccIII	TCCGGA	1 cut(s)	1406
AclWI	GGATC	9 cut(s)	297, 628, 730, 1063, 1433, 2107, 2211, 2395, 2467
AcoI	YGGCCR	3 cut(s)	2215, 2519, 4273
AcsI	RAATTY	7 cut(s)	1658, 1990, 2239, 2469, 2980, 3787, 4564
AcuI	CTGAAG	2 cut(s)	1595, 2544
AcyI	GRCGYC	2 cut(s)	58, 4669
AdeI	CACNNNGTG	3 cut(s)	1550, 1828, 2188
AfiI	CCNNNNNNNGG	5 cut(s)	54, 575, 1843, 2964, 3911
AflII	CTTAAG	3 cut(s)	323, 1789, 4630
AflIII	ACRYGT	2 cut(s)	739, 4217
AhdI	GACNNNNNGTC	1 cut(s)	932
AhlI	ACTAGT	3 cut(s)	1211, 3833, 4729
AjnI	CCWGG	8 cut(s)	124, 1224, 1596, 1714, 1782, 1841, 2770, 3904
AjuI	GAANNNNNNNTTGG	4 cut(s)	3772, 3804, 4719, 4751
AleI	CACNNNNGTG	2 cut(s)	1925, 2395
AloI	GAACNNNNNNTCC	4 cut(s)	808, 840, 3150, 3182
Alw21I	GWGCWC	6 cut(s)	93, 2012, 2056, 2683, 4282, 4857
Alw26I	GTCTC	7 cut(s)	509, 647, 1202, 1484, 3212, 4086, 4415
Alw44I	GTGCAC	1 cut(s)	2052
AlwI	GGATC	9 cut(s)	297, 628, 730, 1063, 1433, 2107, 2211, 2395, 2467
AlwNI	CAGNNNCTG	3 cut(s)	841, 2596, 4748
Ama87I	CYCGRG	1 cut(s)	3150
Aor13HI	TCCGGA	1 cut(s)	1406
ApaI	GGGCCC	1 cut(s)	1838
ApaLI	GTGCAC	1 cut(s)	2052
ApoI	RAATTY	7 cut(s)	1658, 1990, 2239, 2469, 2980, 3787, 4564
Asp700I	GAANNNNTTC	2 cut(s)	3702, 4056
AspLEI	GCGC	8 cut(s)	38, 86, 139, 450, 512, 1883, 3367, 3729
AsuII	TTCGAA	1 cut(s)	3035
AsuNHI	GCTAGC	1 cut(s)	3827
AvaI	CYCGRG	1 cut(s)	3150
AvaII	GGWCC	7 cut(s)	432, 561, 759, 838, 1719, 2768, 4426
AxyI	CCTNAGG	1 cut(s)	1073
BaeGI	GKGCMC	3 cut(s)	1838, 2056, 4789
BaeI	ACNNNNGTAYC	3 cut(s)	2358, 2391, 4970
BalI	TGGCCA	2 cut(s)	2217, 2521
BanI	GGYRCC	1 cut(s)	4784
BanII	GRGCYC	5 cut(s)	1838, 2012, 4021, 4282, 4857
BarI	GAAGNNNNNNTAC	2 cut(s)	2028, 2060
BauI	CACGAG	1 cut(s)	266
BbsI	GAAGAC	4 cut(s)	702, 991, 1360, 1460
Bbv12I	GWGCWC	6 cut(s)	93, 2012, 2056, 2683, 4282, 4857
BbvCI	CCTCAGC	1 cut(s)	4578
BccI	CCATC	8 cut(s)	163, 611, 1846, 2171, 2822, 3300, 4097, 4849
BceAI	ACGGC	4 cut(s)	97, 901, 1938, 3906
BcgI	CGANNNNNNTGC	2 cut(s)	3096, 3130
BciT130I	CCWGG	8 cut(s)	126, 1226, 1598, 1716, 1784, 1843, 2772, 3906
BciVI	GTATCC	3 cut(s)	2359, 4056, 4971
BclI	TGATCA	2 cut(s)	496, 1744
BcoDI	GTCTC	7 cut(s)	509, 647, 1202, 1484, 3212, 4086, 4415
BcuI	ACTAGT	3 cut(s)	1211, 3833, 4729
BfoI	RGCGCY	1 cut(s)	87
BfrI	CTTAAG	3 cut(s)	323, 1789, 4630
BfuAI	ACCTGC	7 cut(s)	707, 826, 1453, 2116, 2641, 3962, 4485
BfuI	GTATCC	3 cut(s)	2359, 4056, 4971
BglI	GCCNNNNNGGC	1 cut(s)	1045
BglII	AGATCT	2 cut(s)	28, 4003
BlpI	GCTNAGC	2 cut(s)	87, 2011
BmcAI	AGTACT	2 cut(s)	3228, 3450
Bme1390I	CCNGG	8 cut(s)	126, 1226, 1598, 1716, 1784, 1843, 2772, 3906
Bme18I	GGWCC	7 cut(s)	432, 561, 759, 838, 1719, 2768, 4426
BmeRI	GACNNNNNGTC	1 cut(s)	932
BmeT110I	CYCGRG	1 cut(s)	3150
BmiI	GGNNCC	8 cut(s)	434, 1277, 1720, 1836, 2193, 2956, 4020, 4786
BmrFI	CCNGG	8 cut(s)	126, 1226, 1598, 1716, 1784, 1843, 2772, 3906
BmrI	ACTGGG	2 cut(s)	2066, 2379
BmtI	GCTAGC	1 cut(s)	3831
BmuI	ACTGGG	2 cut(s)	2066, 2379
BpiI	GAAGAC	4 cut(s)	702, 991, 1360, 1460
BpmI	CTGGAG	5 cut(s)	564, 800, 2688, 3888, 4005
Bpu10I	CCTNAGC	1 cut(s)	4578
Bpu1102I	GCTNAGC	2 cut(s)	87, 2011
Bpu14I	TTCGAA	1 cut(s)	3035
BpuEI	CTTGAG	6 cut(s)	378, 1085, 2246, 2414, 4352, 4552
Bsa29I	ATCGAT	1 cut(s)	4395
BsaAI	YACGTR	6 cut(s)	740, 2258, 2453, 3686, 4220, 4442
BsaBI	GATNNNNATC	4 cut(s)	1131, 2162, 2805, 4340
BsaHI	GRCGYC	2 cut(s)	58, 4669
BsaWI	WCCGGW	1 cut(s)	1406
BsaXI	ACNNNNNCTCC	2 cut(s)	2183, 2213
Bsc4I	CCNNNNNNNGG	5 cut(s)	54, 575, 1843, 2964, 3911
Bse118I	RCCGGY	1 cut(s)	527
Bse21I	CCTNAGG	1 cut(s)	1073
Bse3DI	GCAATG	5 cut(s)	1100, 1806, 2081, 3624, 4673
Bse8I	GATNNNNATC	4 cut(s)	1131, 2162, 2805, 4340
BseAI	TCCGGA	1 cut(s)	1406
BseBI	CCWGG	8 cut(s)	126, 1226, 1598, 1716, 1784, 1843, 2772, 3906
BseCI	ATCGAT	1 cut(s)	4395
BseJI	GATNNNNATC	4 cut(s)	1131, 2162, 2805, 4340
BseLI	CCNNNNNNNGG	5 cut(s)	54, 575, 1843, 2964, 3911
BseMI	GCAATG	5 cut(s)	1100, 1806, 2081, 3624, 4673
BseRI	GAGGAG	1 cut(s)	3168
BseSI	GKGCMC	3 cut(s)	1838, 2056, 4789
BseYI	CCCAGC	1 cut(s)	2084
BsgI	GTGCAG	1 cut(s)	248
Bsh1236I	CGCG	2 cut(s)	36, 1881
BshNI	GGYRCC	1 cut(s)	4784
BshVI	ATCGAT	1 cut(s)	4395
BsiHKAI	GWGCWC	6 cut(s)	93, 2012, 2056, 2683, 4282, 4857
BsiHKCI	CYCGRG	1 cut(s)	3150
BsiSI	CCGG	3 cut(s)	528, 961, 1407
BslFI	GGGAC	3 cut(s)	418, 3901, 4312
BslI	CCNNNNNNNGG	5 cut(s)	54, 575, 1843, 2964, 3911
BsmAI	GTCTC	7 cut(s)	509, 647, 1202, 1484, 3212, 4086, 4415
BsmBI	CGTCTC	1 cut(s)	4415
BsmFI	GGGAC	3 cut(s)	418, 3901, 4312
BsmI	GAATGC	2 cut(s)	3957, 4143
BsoBI	CYCGRG	1 cut(s)	3150
Bsp119I	TTCGAA	1 cut(s)	3035
Bsp120I	GGGCCC	1 cut(s)	1834
Bsp1286I	GDGCHC	9 cut(s)	93, 1838, 2012, 2056, 2683, 4021, 4282, 4789, 4857
Bsp13I	TCCGGA	1 cut(s)	1406
Bsp1407I	TGTACA	2 cut(s)	278, 1195
Bsp1720I	GCTNAGC	2 cut(s)	87, 2011
Bsp19I	CCATGG	1 cut(s)	2764
BspDI	ATCGAT	1 cut(s)	4395
BspEI	TCCGGA	1 cut(s)	1406
BspFNI	CGCG	2 cut(s)	36, 1881
BspHI	TCATGA	1 cut(s)	4807
BspLI	GGNNCC	8 cut(s)	434, 1277, 1720, 1836, 2193, 2956, 4020, 4786
BspMAI	CTGCAG	7 cut(s)	336, 463, 718, 1306, 2035, 2638, 4493
BspMI	ACCTGC	7 cut(s)	707, 826, 1453, 2116, 2641, 3962, 4485
BspOI	GCTAGC	1 cut(s)	3831
BspPI	GGATC	9 cut(s)	297, 628, 730, 1063, 1433, 2107, 2211, 2395, 2467
BspQI	GCTCTTC	2 cut(s)	1476, 4287
BspT104I	TTCGAA	1 cut(s)	3035
BspT107I	GGYRCC	1 cut(s)	4784
BspTI	CTTAAG	3 cut(s)	323, 1789, 4630
BsrDI	GCAATG	5 cut(s)	1100, 1806, 2081, 3624, 4673
BsrFI	RCCGGY	1 cut(s)	527
BsrGI	TGTACA	2 cut(s)	278, 1195
BssAI	RCCGGY	1 cut(s)	527
BssNAI	GTATAC	1 cut(s)	3588
BssNI	GRCGYC	2 cut(s)	58, 4669
BssSI	CACGAG	1 cut(s)	266
BssT1I	CCWWGG	5 cut(s)	1338, 2764, 3235, 3414, 4422
Bst1107I	GTATAC	1 cut(s)	3588
Bst2BI	CACGAG	1 cut(s)	266
Bst2UI	CCWGG	8 cut(s)	126, 1226, 1598, 1716, 1784, 1843, 2772, 3906
Bst6I	CTCTTC	8 cut(s)	525, 1212, 1476, 1805, 2563, 4084, 4287, 4710
BstACI	GRCGYC	2 cut(s)	58, 4669
BstAFI	CTTAAG	3 cut(s)	323, 1789, 4630
BstAPI	GCANNNNNTGC	4 cut(s)	841, 1235, 1298, 2678
BstAUI	TGTACA	2 cut(s)	278, 1195
BstBAI	YACGTR	6 cut(s)	740, 2258, 2453, 3686, 4220, 4442
BstBI	TTCGAA	1 cut(s)	3035
BstDSI	CCRYGG	2 cut(s)	1920, 2764
BstFNI	CGCG	2 cut(s)	36, 1881
BstH2I	RGCGCY	1 cut(s)	87
BstHHI	GCGC	8 cut(s)	38, 86, 139, 450, 512, 1883, 3367, 3729
BstMAI	GTCTC	7 cut(s)	509, 647, 1202, 1484, 3212, 4086, 4415
BstNI	CCWGG	8 cut(s)	126, 1226, 1598, 1716, 1784, 1843, 2772, 3906
BstNSI	RCATGY	5 cut(s)	1605, 1901, 2483, 3046, 3629
BstSCI	CCNGG	8 cut(s)	124, 1224, 1596, 1714, 1782, 1841, 2770, 3904
BstSLI	GKGCMC	3 cut(s)	1838, 2056, 4789
BstSNI	TACGTA	2 cut(s)	2258, 3686
BstUI	CGCG	2 cut(s)	36, 1881
BstV2I	GAAGAC	4 cut(s)	702, 991, 1360, 1460
BstX2I	RGATCY	7 cut(s)	28, 620, 722, 1068, 2099, 2459, 4003
BstXI	CCANNNNNNTGG	3 cut(s)	802, 1153, 2771
BstYI	RGATCY	7 cut(s)	28, 620, 722, 1068, 2099, 2459, 4003
BstZ17I	GTATAC	1 cut(s)	3588
Bsu15I	ATCGAT	1 cut(s)	4395
Bsu36I	CCTNAGG	1 cut(s)	1073
BsuI	GTATCC	3 cut(s)	2359, 4056, 4971
BsuTUI	ATCGAT	1 cut(s)	4395
BtgI	CCRYGG	2 cut(s)	1920, 2764
BtsI	GCAGTG	1 cut(s)	4486
BveI	ACCTGC	7 cut(s)	707, 826, 1453, 2116, 2641, 3962, 4485
CaiI	CAGNNNCTG	3 cut(s)	841, 2596, 4748
CciI	TCATGA	1 cut(s)	4807
CfoI	GCGC	8 cut(s)	38, 86, 139, 450, 512, 1883, 3367, 3729
Cfr10I	RCCGGY	1 cut(s)	527
ClaI	ATCGAT	1 cut(s)	4395
CseI	GACGC	4 cut(s)	47, 936, 4397, 4677
DraIII	CACNNNGTG	3 cut(s)	1550, 1828, 2188
DrdI	GACNNNNNNGTC	1 cut(s)	216
DriI	GACNNNNNGTC	1 cut(s)	932
DseDI	GACNNNNNNGTC	1 cut(s)	216
EaeI	YGGCCR	3 cut(s)	2215, 2519, 4273
Eam1104I	CTCTTC	8 cut(s)	525, 1212, 1476, 1805, 2563, 4084, 4287, 4710
Eam1105I	GACNNNNNGTC	1 cut(s)	932
EarI	CTCTTC	8 cut(s)	525, 1212, 1476, 1805, 2563, 4084, 4287, 4710
EciI	GGCGGA	2 cut(s)	34, 2792
Ecl136II	GAGCTC	3 cut(s)	2010, 4280, 4855
Eco105I	TACGTA	2 cut(s)	2258, 3686
Eco130I	CCWWGG	5 cut(s)	1338, 2764, 3235, 3414, 4422
Eco147I	AGGCCT	3 cut(s)	1589, 1787, 2721
Eco24I	GRGCYC	5 cut(s)	1838, 2012, 4021, 4282, 4857
Eco32I	GATATC	2 cut(s)	1583, 2160
Eco47I	GGWCC	7 cut(s)	432, 561, 759, 838, 1719, 2768, 4426
Eco53kI	GAGCTC	3 cut(s)	2010, 4280, 4855
Eco57I	CTGAAG	2 cut(s)	1595, 2544
Eco81I	CCTNAGG	1 cut(s)	1073
Eco88I	CYCGRG	1 cut(s)	3150
EcoICRI	GAGCTC	3 cut(s)	2010, 4280, 4855
EcoO109I	RGGNCCY	2 cut(s)	432, 838
EcoRI	GAATTC	3 cut(s)	1990, 3787, 4564
EcoRII	CCWGG	8 cut(s)	124, 1224, 1596, 1714, 1782, 1841, 2770, 3904
EcoRV	GATATC	2 cut(s)	1583, 2160
EcoT14I	CCWWGG	5 cut(s)	1338, 2764, 3235, 3414, 4422
EcoT22I	ATGCAT	3 cut(s)	1294, 2081, 2278
EcoT38I	GRGCYC	5 cut(s)	1838, 2012, 4021, 4282, 4857
ErhI	CCWWGG	5 cut(s)	1338, 2764, 3235, 3414, 4422
Esp3I	CGTCTC	1 cut(s)	4415
FalI	AAGNNNNNCTT	8 cut(s)	3042, 3074, 3407, 3439, 4025, 4057, 4242, 4274
FaqI	GGGAC	3 cut(s)	418, 3901, 4312
FauI	CCCGC	1 cut(s)	2592
FauNDI	CATATG	1 cut(s)	3171
FbaI	TGATCA	2 cut(s)	496, 1744
FblI	GTMKAC	2 cut(s)	220, 3587
FriOI	GRGCYC	5 cut(s)	1838, 2012, 4021, 4282, 4857
FspI	TGCGCA	2 cut(s)	138, 449
GlaI	GCGC	8 cut(s)	37, 85, 138, 449, 511, 1882, 3366, 3728
GsaI	CCCAGC	1 cut(s)	2088
GsuI	CTGGAG	5 cut(s)	564, 800, 2688, 3888, 4005
HaeII	RGCGCY	1 cut(s)	87
HapII	CCGG	3 cut(s)	528, 961, 1407
HgaI	GACGC	4 cut(s)	47, 936, 4397, 4677
HhaI	GCGC	8 cut(s)	38, 86, 139, 450, 512, 1883, 3367, 3729
Hin1I	GRCGYC	2 cut(s)	58, 4669
Hin6I	GCGC	8 cut(s)	36, 84, 137, 448, 510, 1881, 3365, 3727
HinP1I	GCGC	8 cut(s)	36, 84, 137, 448, 510, 1881, 3365, 3727
HincII	GTYRAC	4 cut(s)	1506, 2446, 2905, 3483
HindII	GTYRAC	4 cut(s)	1506, 2446, 2905, 3483
HindIII	AAGCTT	5 cut(s)	227, 533, 674, 2948, 3983
HpaII	CCGG	3 cut(s)	528, 961, 1407
Hpy99I	CGWCG	3 cut(s)	63, 930, 2618
HpyCH4IV	ACGT	8 cut(s)	582, 739, 2257, 2452, 3685, 4219, 4441, 4474
HpySE526I	ACGT	8 cut(s)	582, 739, 2257, 2452, 3685, 4219, 4441, 4474
Hsp92I	GRCGYC	2 cut(s)	58, 4669
HspAI	GCGC	8 cut(s)	36, 84, 137, 448, 510, 1881, 3365, 3727
Kpn2I	TCCGGA	1 cut(s)	1406
KroI	GCCGGC	1 cut(s)	527
KroNI	GCCGGC	1 cut(s)	529
Ksp22I	TGATCA	2 cut(s)	496, 1744
LguI	GCTCTTC	2 cut(s)	1476, 4287
LmnI	GCTCC	8 cut(s)	111, 892, 1275, 1695, 2191, 2669, 2954, 4024
MaeII	ACGT	8 cut(s)	582, 739, 2257, 2452, 3685, 4219, 4441, 4474
MfeI	CAATTG	1 cut(s)	4380
MflI	RGATCY	7 cut(s)	28, 620, 722, 1068, 2099, 2459, 4003
MhlI	GDGCHC	9 cut(s)	93, 1838, 2012, 2056, 2683, 4021, 4282, 4789, 4857
MlsI	TGGCCA	2 cut(s)	2217, 2521
MluNI	TGGCCA	2 cut(s)	2217, 2521
MlyI	GAGTC	9 cut(s)	32, 511, 617, 2441, 2549, 3320, 3895, 4334, 4902
MmeI	TCCRAC	5 cut(s)	819, 1545, 2107, 2805, 3743
Mox20I	TGGCCA	2 cut(s)	2217, 2521
Mph1103I	ATGCAT	3 cut(s)	1294, 2081, 2278
MroI	TCCGGA	1 cut(s)	1406
MroNI	GCCGGC	1 cut(s)	527
MroXI	GAANNNNTTC	2 cut(s)	3702, 4056
MscI	TGGCCA	2 cut(s)	2217, 2521
MslI	CAYNNNNRTG	5 cut(s)	1925, 2074, 2395, 3707, 4222
Msp20I	TGGCCA	2 cut(s)	2217, 2521
MspA1I	CMGCKG	4 cut(s)	757, 1232, 1999, 2987
MspCI	CTTAAG	3 cut(s)	323, 1789, 4630
MspI	CCGG	3 cut(s)	528, 961, 1407
MspR9I	CCNGG	8 cut(s)	126, 1226, 1598, 1716, 1784, 1843, 2772, 3906
MunI	CAATTG	1 cut(s)	4380
Mva1269I	GAATGC	2 cut(s)	3957, 4143
MvaI	CCWGG	8 cut(s)	126, 1226, 1598, 1716, 1784, 1843, 2772, 3906
MvnI	CGCG	2 cut(s)	36, 1881
NaeI	GCCGGC	1 cut(s)	529
NcoI	CCATGG	1 cut(s)	2764
NdeI	CATATG	1 cut(s)	3171
NgoMIV	GCCGGC	1 cut(s)	527
NheI	GCTAGC	1 cut(s)	3827
NlaIV	GGNNCC	8 cut(s)	434, 1277, 1720, 1836, 2193, 2956, 4020, 4786
NmeAIII	GCCGAG	3 cut(s)	34, 73, 4301
NsbI	TGCGCA	2 cut(s)	138, 449
NsiI	ATGCAT	3 cut(s)	1294, 2081, 2278
NspI	RCATGY	5 cut(s)	1605, 1901, 2483, 3046, 3629
NspV	TTCGAA	1 cut(s)	3035
OliI	CACNNNNGTG	2 cut(s)	1925, 2395
PaeI	GCATGC	2 cut(s)	1605, 1901
PaeR7I	CTCGAG	1 cut(s)	3150
PagI	TCATGA	1 cut(s)	4807
PaqCI	CACCTGC	2 cut(s)	707, 1453
PceI	AGGCCT	3 cut(s)	1589, 1787, 2721
PciSI	GCTCTTC	2 cut(s)	1476, 4287
PctI	GAATGC	2 cut(s)	3957, 4143
PdiI	GCCGGC	1 cut(s)	529
PdmI	GAANNNNTTC	2 cut(s)	3702, 4056
PflMI	CCANNNNNTGG	1 cut(s)	575
PfoI	TCCNGGA	1 cut(s)	3904
PleI	GAGTC	9 cut(s)	31, 511, 616, 2441, 2549, 3319, 3895, 4333, 4902
PpsI	GAGTC	9 cut(s)	31, 511, 616, 2441, 2549, 3319, 3895, 4333, 4902
Ppu21I	YACGTR	6 cut(s)	740, 2258, 2453, 3686, 4220, 4442
PpuMI	RGGWCCY	2 cut(s)	432, 838
PsiI	TTATAA	1 cut(s)	101
Psp124BI	GAGCTC	3 cut(s)	2012, 4282, 4857
Psp5II	RGGWCCY	2 cut(s)	432, 838
Psp6I	CCWGG	8 cut(s)	124, 1224, 1596, 1714, 1782, 1841, 2770, 3904
PspFI	CCCAGC	1 cut(s)	2084
PspGI	CCWGG	8 cut(s)	124, 1224, 1596, 1714, 1782, 1841, 2770, 3904
PspN4I	GGNNCC	8 cut(s)	434, 1277, 1720, 1836, 2193, 2956, 4020, 4786
PspOMI	GGGCCC	1 cut(s)	1834
PspPPI	RGGWCCY	2 cut(s)	432, 838
PspXI	VCTCGAGB	1 cut(s)	3150
PstI	CTGCAG	7 cut(s)	336, 463, 718, 1306, 2035, 2638, 4493
PstNI	CAGNNNCTG	3 cut(s)	841, 2596, 4748
PsuI	RGATCY	7 cut(s)	28, 620, 722, 1068, 2099, 2459, 4003
PvuII	CAGCTG	2 cut(s)	1232, 1999
RseI	CAYNNNNRTG	5 cut(s)	1925, 2074, 2395, 3707, 4222
SacI	GAGCTC	3 cut(s)	2012, 4282, 4857
SapI	GCTCTTC	2 cut(s)	1476, 4287
ScaI	AGTACT	2 cut(s)	3228, 3450
SchI	GAGTC	9 cut(s)	32, 511, 617, 2441, 2549, 3320, 3895, 4334, 4902
ScrFI	CCNGG	8 cut(s)	126, 1226, 1598, 1716, 1784, 1843, 2772, 3906
SduI	GDGCHC	9 cut(s)	93, 1838, 2012, 2056, 2683, 4021, 4282, 4789, 4857
Sfr274I	CTCGAG	1 cut(s)	3150
SfuI	TTCGAA	1 cut(s)	3035
SinI	GGWCC	7 cut(s)	432, 561, 759, 838, 1719, 2768, 4426
SlaI	CTCGAG	1 cut(s)	3150
SmiMI	CAYNNNNRTG	5 cut(s)	1925, 2074, 2395, 3707, 4222
SnaBI	TACGTA	2 cut(s)	2258, 3686
SpeI	ACTAGT	3 cut(s)	1211, 3833, 4729
SphI	GCATGC	2 cut(s)	1605, 1901
SseBI	AGGCCT	3 cut(s)	1589, 1787, 2721
SspI	AATATT	3 cut(s)	351, 1975, 2527
SstI	GAGCTC	3 cut(s)	2012, 4282, 4857
StuI	AGGCCT	3 cut(s)	1589, 1787, 2721
StyD4I	CCNGG	8 cut(s)	124, 1224, 1596, 1714, 1782, 1841, 2770, 3904
StyI	CCWWGG	5 cut(s)	1338, 2764, 3235, 3414, 4422
TaiI	ACGT	8 cut(s)	585, 742, 2260, 2455, 3688, 4222, 4444, 4477
TaqII	GACCGA	2 cut(s)	320, 3855
TatI	WGTACW	5 cut(s)	278, 1195, 3226, 3448, 3679
TspGWI	ACGGA	4 cut(s)	98, 1403, 2631, 3934
Van91I	CCANNNNNTGG	1 cut(s)	575
Vha464I	CTTAAG	3 cut(s)	323, 1789, 4630
VneI	GTGCAC	1 cut(s)	2052
VpaK11BI	GGWCC	7 cut(s)	432, 561, 759, 838, 1719, 2768, 4426
XapI	RAATTY	7 cut(s)	1658, 1990, 2239, 2469, 2980, 3787, 4564
XbaI	TCTAGA	1 cut(s)	3929
XceI	RCATGY	5 cut(s)	1605, 1901, 2483, 3046, 3629
XcmI	CCANNNNNNNNNTGG	1 cut(s)	4957
XhoI	CTCGAG	1 cut(s)	3150
XmiI	GTMKAC	2 cut(s)	220, 3587
XmnI	GAANNNNTTC	2 cut(s)	3702, 4056
ZrmI	AGTACT	2 cut(s)	3228, 3450
Zsp2I	ATGCAT	3 cut(s)	1294, 2081, 2278

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.