Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0009443

Physical Location & Seq

Genomic Coordinates Reverse (-)

23632217 .. 23634989

Gene Structure 2773 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G235200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGGCTTCCCACCTATTGAGGCGCGCCCTCGGAAGCCGCTCGACCCAGTTTCTCTCCGGCGCCGCGAATCCTAGCCCTAGCCTTCTATCCTCCTCATCACCGTCATCACAAGCAGCTAGGGTTTTCTCGTCTGATTCCACTCCGATCCGTGCCACTCTCTTCCCCGGCGATGGTATCGGCCCCGAGATCGCCGAGTCCGTCAAACAGGTATTCAGAGAAGCTGAAGTGCCAATTGAATGGGAAGAGCATTACGTTGGGGACCAAATTGATCCTAGAACTCAGAGTTTTCTAACATGGGAAAGTTTAGAATCGGTACGAAAGAACCGGGTAGGCTTGAAAGGGCCGATGGCCACACCAATTGGGAAAGGTCATCGTTCATTGAACCTTACTCTGAGGAAAGAACTTAATTTGTATGCAAATGTCAGGCCTTGTTACAGCCTTCCTGGATATAAAACTCGATATGACGATGTCAATCTTATCACTATTCGTGAAAATACAGAGGGGGAGTATAGTGGACTTGAACATCAAGTGGTGAGAGGTGTTGTTGAGAGCCTCAAGATTATAACCCGTCAGGCAAGCTTGAGGGTGGCTGAGTATGCTTTCCATTATGCCAAAACCCATGGAAGAGAGAGAGTGTCTGCGATACACAAAGCAAACATTATGCAGAAAACTGATGGTCTTTTTCTTAAGTGTTGTCGTGAGGTTGCAGAGAAGTACCCTGACATAAAATACGAGGAAGTCGTCATTGATAATTGCTGTATGATGCTTGTGAAGAATCCAGCACTTTTTGATGTGCTAGTCATGCCTAACCTCTATGGTGATATTATTAGTGACCTTTGTGCTGGGTTGATAGGGGGTTTGGGATTAACACCGAGTTGCAACATTGGTGAGGGAGGCATTGCCCTTGCTGAAGCTGTACATGGTTCAGCACCTGATATTGCTGGAAAGAACTTGGCAAATCCAACTGCTCTGCTTCTAAGTTCTGTTACAATGCTACGACATTTGGAGCTTCACGATAAAGCTGATCGGATCCAGAATGCAATCCTCAGCACAATTGCAGAGGGGAAGTTCCGAACAGCTGACCTTGGTGGCGCATCGTCAACTTCCGACTTTACGAAGGCAATCTGCGATCATCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004448 GO:0004449 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0006102 GO:0008144 GO:0008150 GO:0008152 GO:0008270 GO:0009060 GO:0009507 GO:0009536 GO:0009987 GO:0015980 GO:0016491 GO:0016614 GO:0016616 GO:0016999 GO:0017076 GO:0017144 GO:0019752 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0046872 GO:0046914 GO:0055114 GO:0071704 GO:0072350 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00020 ko01100 ko01110 ko01120 ko01130 ko01200 ko01210 ko01230 map00020 map01100 map01110 map01120 map01130 map01200 map01210 map01230

Pfam Domains

Protein Families

Iso_dh

Protein Analysis

380

Amino Acids

41.34

Weight (kDa)

6.61

Isoelectric Point (pI)

40.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009443)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09810 AT5G03290
fragaria_vesca	FvH4_6g16070 FvH4_6g16070 FvH4_6g16070 FvH4_6g16070
malus_domestica	MD04G1096100.v1.1 MD12G1116100.v1.1
prunus_persica	Prupe.6G235200_v2.0.a1
pyrus_communis	pycom04g09100
rosa_chinensis	RchiOBHm_Chr3g0469901
rosa_laevigata	RLG00000024314
rosa_multiflora	Rmu_sc0009708.1_g000001
rosa_roxburghii	Rroxscaffold_6G00411380
rosa_rugosa	Rorug03G0105200 Rorug03G0105300 Rorug03G0105400
rosa_samantha	Rh3AG154300 Rh3BG178400 Rh3CG169000 Rh3DG196800
rosa_wichuraiana	Rw3G014530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	563
AccB1I	GGYRCC	1 cut(s)	59
AccBSI	CCGCTC	1 cut(s)	39
AccII	CGCG	2 cut(s)	24, 65
AciI	CCGC	2 cut(s)	37, 63
AclWI	GGATC	4 cut(s)	139, 263, 1024, 1037
AcoI	YGGCCR	1 cut(s)	348
AcuI	CTGAAG	2 cut(s)	243, 930
AcyI	GRCGYC	1 cut(s)	60
AfaI	GTAC	3 cut(s)	315, 716, 918
AfiI	CCNNNNNNNGG	1 cut(s)	170
AflII	CTTAAG	1 cut(s)	686
AgsI	TTSAA	4 cut(s)	236, 337, 382, 521
AjnI	CCWGG	1 cut(s)	442
AluBI	AGCT	7 cut(s)	116, 221, 579, 914, 1009, 1022, 1079
AluI	AGCT	7 cut(s)	116, 221, 579, 914, 1009, 1022, 1079
AlwI	GGATC	4 cut(s)	139, 263, 1024, 1037
AlwNI	CAGNNNCTG	1 cut(s)	932
Ama87I	CYCGRG	1 cut(s)	182
AoxI	GGCC	4 cut(s)	178, 341, 348, 425
ApeKI	GCWGC	1 cut(s)	113
AscI	GGCGCGCC	1 cut(s)	22
AspLEI	GCGC	4 cut(s)	24, 26, 62, 1094
AspS9I	GGNCC	3 cut(s)	179, 259, 341
AsuC2I	CCSGG	2 cut(s)	165, 326
AsuHPI	GGTGA	4 cut(s)	90, 544, 830, 899
AvaI	CYCGRG	1 cut(s)	182
AvaII	GGWCC	1 cut(s)	259
BalI	TGGCCA	1 cut(s)	350
BamHI	GGATCC	1 cut(s)	1029
BanI	GGYRCC	1 cut(s)	59
BbvCI	CCTCAGC	1 cut(s)	1046
BbvI	GCAGC	1 cut(s)	125
BccI	CCATC	3 cut(s)	164, 340, 668
BciT130I	CCWGG	1 cut(s)	444
BcnI	CCSGG	2 cut(s)	165, 326
BfaI	CTAG	5 cut(s)	72, 78, 117, 273, 797
BfoI	RGCGCY	1 cut(s)	63
BfrI	CTTAAG	1 cut(s)	686
BisI	GCNGC	3 cut(s)	37, 63, 114
BlsI	GCNGC	3 cut(s)	38, 64, 115
Bme1390I	CCNGG	3 cut(s)	165, 326, 444
Bme18I	GGWCC	1 cut(s)	259
BmeT110I	CYCGRG	1 cut(s)	182
BmgT120I	GGNCC	3 cut(s)	179, 259, 341
BmiI	GGNNCC	4 cut(s)	61, 181, 260, 1031
BmrFI	CCNGG	3 cut(s)	165, 326, 444
BmrI	ACTGGG	1 cut(s)	40
BmsI	GCATC	2 cut(s)	753, 1103
BmuI	ACTGGG	1 cut(s)	40
Bpu10I	CCTNAGC	1 cut(s)	1046
BpuEI	CTTGAG	2 cut(s)	539, 601
BpuMI	CCSGG	2 cut(s)	165, 326
BsaBI	GATNNNNATC	1 cut(s)	471
BsaHI	GRCGYC	1 cut(s)	60
BsaJI	CCNNGG	4 cut(s)	28, 163, 619, 1084
Bsc4I	CCNNNNNNNGG	1 cut(s)	170
Bse1I	ACTGG	1 cut(s)	46
Bse3DI	GCAATG	1 cut(s)	897
Bse8I	GATNNNNATC	1 cut(s)	471
BseBI	CCWGG	1 cut(s)	444
BseDI	CCNNGG	4 cut(s)	28, 163, 619, 1084
BseJI	GATNNNNATC	1 cut(s)	471
BseLI	CCNNNNNNNGG	1 cut(s)	170
BseMI	GCAATG	1 cut(s)	897
BseMII	CTCAG	4 cut(s)	293, 383, 582, 1060
BseNI	ACTGG	1 cut(s)	46
BsePI	GCGCGC	1 cut(s)	22
BseRI	GAGGAG	1 cut(s)	82
BseXI	GCAGC	1 cut(s)	125
BseYI	CCCAGC	1 cut(s)	842
Bsh1236I	CGCG	2 cut(s)	24, 65
BshFI	GGCC	4 cut(s)	180, 343, 350, 427
BshNI	GGYRCC	1 cut(s)	59
BsiHKCI	CYCGRG	1 cut(s)	182
BsiSI	CCGG	3 cut(s)	57, 165, 325
BslFI	GGGAC	1 cut(s)	272
BslI	CCNNNNNNNGG	1 cut(s)	170
BsmFI	GGGAC	1 cut(s)	272
BsmI	GAATGC	1 cut(s)	1042
BsnI	GGCC	4 cut(s)	180, 343, 350, 427
BsoBI	CYCGRG	1 cut(s)	182
Bsp1407I	TGTACA	1 cut(s)	916
Bsp143I	GATC	6 cut(s)	144, 186, 268, 1024, 1029, 1129
Bsp19I	CCATGG	1 cut(s)	619
BspACI	CCGC	2 cut(s)	37, 63
BspANI	GGCC	4 cut(s)	180, 343, 350, 427
BspCNI	CTCAG	4 cut(s)	292, 384, 583, 1059
BspFNI	CGCG	2 cut(s)	24, 65
BspLI	GGNNCC	4 cut(s)	61, 181, 260, 1031
BspPI	GGATC	4 cut(s)	139, 263, 1024, 1037
BspQI	GCTCTTC	1 cut(s)	237
BspT107I	GGYRCC	1 cut(s)	59
BspTI	CTTAAG	1 cut(s)	686
BsrBI	CCGCTC	1 cut(s)	39
BsrDI	GCAATG	1 cut(s)	897
BsrGI	TGTACA	1 cut(s)	916
BsrI	ACTGG	1 cut(s)	46
BssECI	CCNNGG	4 cut(s)	28, 163, 619, 1084
BssHII	GCGCGC	1 cut(s)	22
BssMI	GATC	6 cut(s)	144, 186, 268, 1024, 1029, 1129
BssNI	GRCGYC	1 cut(s)	60
BssT1I	CCWWGG	2 cut(s)	619, 1084
Bst2UI	CCWGG	1 cut(s)	444
Bst4CI	ACNGT	1 cut(s)	102
Bst6I	CTCTTC	3 cut(s)	164, 237, 619
BstACI	GRCGYC	1 cut(s)	60
BstAFI	CTTAAG	1 cut(s)	686
BstAUI	TGTACA	1 cut(s)	916
BstC8I	GCNNGC	2 cut(s)	24, 577
BstDEI	CTNAG	5 cut(s)	279, 392, 591, 977, 1046
BstDSI	CCRYGG	1 cut(s)	619
BstFNI	CGCG	2 cut(s)	24, 65
BstH2I	RGCGCY	1 cut(s)	63
BstHHI	GCGC	4 cut(s)	24, 26, 62, 1094
BstKTI	GATC	6 cut(s)	147, 189, 271, 1027, 1032, 1132
BstMBI	GATC	6 cut(s)	144, 186, 268, 1024, 1029, 1129
BstMWI	GCNNNNNNNGC	2 cut(s)	596, 802
BstNI	CCWGG	1 cut(s)	444
BstSCI	CCNGG	3 cut(s)	163, 324, 442
BstUI	CGCG	2 cut(s)	24, 65
BstV1I	GCAGC	1 cut(s)	125
BstX2I	RGATCY	1 cut(s)	1029
BstXI	CCANNNNNNTGG	1 cut(s)	237
BstYI	RGATCY	1 cut(s)	1029
BsuRI	GGCC	4 cut(s)	180, 343, 350, 427
BtgI	CCRYGG	1 cut(s)	619
BtgZI	GCGATG	1 cut(s)	183
Cac8I	GCNNGC	2 cut(s)	24, 577
CaiI	CAGNNNCTG	1 cut(s)	932
CfoI	GCGC	4 cut(s)	24, 26, 62, 1094
Cfr13I	GGNCC	3 cut(s)	179, 259, 341
Csp6I	GTAC	3 cut(s)	314, 715, 917
CspCI	CAANNNNNGTGG	2 cut(s)	340, 375
CviAII	CATG	4 cut(s)	294, 620, 802, 920
CviQI	GTAC	3 cut(s)	314, 715, 917
DdeI	CTNAG	5 cut(s)	279, 392, 591, 977, 1046
DinI	GGCGCC	1 cut(s)	61
DpnI	GATC	6 cut(s)	146, 188, 270, 1026, 1031, 1131
DpnII	GATC	6 cut(s)	144, 186, 268, 1024, 1029, 1129
EaeI	YGGCCR	1 cut(s)	348
Eam1104I	CTCTTC	3 cut(s)	164, 237, 619
EarI	CTCTTC	3 cut(s)	164, 237, 619
Eco130I	CCWWGG	2 cut(s)	619, 1084
Eco147I	AGGCCT	1 cut(s)	427
Eco47I	GGWCC	1 cut(s)	259
Eco57I	CTGAAG	2 cut(s)	243, 930
Eco88I	CYCGRG	1 cut(s)	182
EcoRII	CCWGG	1 cut(s)	442
EcoT14I	CCWWGG	2 cut(s)	619, 1084
EgeI	GGCGCC	1 cut(s)	61
EheI	GGCGCC	1 cut(s)	61
ErhI	CCWWGG	2 cut(s)	619, 1084
FaeI	CATG	4 cut(s)	297, 623, 805, 923
FaqI	GGGAC	1 cut(s)	272
FatI	CATG	4 cut(s)	293, 619, 801, 919
Fnu4HI	GCNGC	3 cut(s)	37, 63, 114
Fsp4HI	GCNGC	3 cut(s)	37, 63, 114
FspBI	CTAG	5 cut(s)	72, 78, 117, 273, 797
GlaI	GCGC	4 cut(s)	23, 25, 61, 1093
GluI	GCNGC	3 cut(s)	37, 63, 114
GsaI	CCCAGC	1 cut(s)	846
HaeII	RGCGCY	1 cut(s)	63
HaeIII	GGCC	4 cut(s)	180, 343, 350, 427
HapII	CCGG	3 cut(s)	57, 165, 325
HhaI	GCGC	4 cut(s)	24, 26, 62, 1094
Hin1I	GRCGYC	1 cut(s)	60
Hin1II	CATG	4 cut(s)	297, 623, 805, 923
Hin6I	GCGC	4 cut(s)	22, 24, 60, 1092
HinP1I	GCGC	4 cut(s)	22, 24, 60, 1092
HincII	GTYRAC	1 cut(s)	1101
HindII	GTYRAC	1 cut(s)	1101
HindIII	AAGCTT	1 cut(s)	577
HinfI	GANTC	5 cut(s)	67, 134, 194, 308, 775
HpaII	CCGG	3 cut(s)	57, 165, 325
HphI	GGTGA	4 cut(s)	90, 544, 830, 899
Hpy166II	GTNNAC	2 cut(s)	515, 1101
Hpy188I	TCNGA	9 cut(s)	32, 133, 144, 215, 282, 393, 1029, 1073, 1108
Hpy188III	TCNNGA	5 cut(s)	488, 556, 698, 1013, 1033
Hpy8I	GTNNAC	2 cut(s)	515, 1101
HpyAV	CCTTC	3 cut(s)	92, 449, 1111
HpyCH4III	ACNGT	1 cut(s)	102
HpyCH4IV	ACGT	1 cut(s)	252
HpyCH4V	TGCA	6 cut(s)	416, 664, 707, 879, 1040, 1058
HpyF10VI	GCNNNNNNNGC	2 cut(s)	596, 802
HpyF3I	CTNAG	5 cut(s)	279, 392, 591, 977, 1046
HpySE526I	ACGT	1 cut(s)	252
Hsp92I	GRCGYC	1 cut(s)	60
Hsp92II	CATG	4 cut(s)	297, 623, 805, 923
HspAI	GCGC	4 cut(s)	22, 24, 60, 1092
KasI	GGCGCC	1 cut(s)	59
Kzo9I	GATC	6 cut(s)	144, 186, 268, 1024, 1029, 1129
LguI	GCTCTTC	1 cut(s)	237
LmnI	GCTCC	1 cut(s)	1006
Lsp1109I	GCAGC	1 cut(s)	125
LweI	GCATC	2 cut(s)	753, 1103
MaeI	CTAG	5 cut(s)	72, 78, 117, 273, 797
MaeII	ACGT	1 cut(s)	252
MaeIII	GTNAC	3 cut(s)	431, 830, 985
MalI	GATC	6 cut(s)	146, 188, 270, 1026, 1031, 1131
MbiI	CCGCTC	1 cut(s)	39
MboI	GATC	6 cut(s)	144, 186, 268, 1024, 1029, 1129
MboII	GAAGA	4 cut(s)	151, 254, 636, 784
MfeI	CAATTG	3 cut(s)	231, 357, 1053
MflI	RGATCY	1 cut(s)	1029
MlsI	TGGCCA	1 cut(s)	350
MluCI	AATT	6 cut(s)	231, 264, 357, 406, 751, 1053
MluNI	TGGCCA	1 cut(s)	350
Mly113I	GGCGCC	1 cut(s)	60
MlyI	GAGTC	1 cut(s)	203
MmeI	TCCRAC	2 cut(s)	986, 1131
Mox20I	TGGCCA	1 cut(s)	350
MscI	TGGCCA	1 cut(s)	350
MseI	TTAA	3 cut(s)	405, 687, 866
Msp20I	TGGCCA	1 cut(s)	350
MspA1I	CMGCKG	1 cut(s)	1079
MspCI	CTTAAG	1 cut(s)	686
MspI	CCGG	3 cut(s)	57, 165, 325
MspR9I	CCNGG	3 cut(s)	165, 326, 444
MunI	CAATTG	3 cut(s)	231, 357, 1053
Mva1269I	GAATGC	1 cut(s)	1042
MvaI	CCWGG	1 cut(s)	444
MvnI	CGCG	2 cut(s)	24, 65
MwoI	GCNNNNNNNGC	2 cut(s)	596, 802
NarI	GGCGCC	1 cut(s)	60
NciI	CCSGG	2 cut(s)	165, 326
NcoI	CCATGG	1 cut(s)	619
NdeII	GATC	6 cut(s)	144, 186, 268, 1024, 1029, 1129
NlaIII	CATG	4 cut(s)	297, 623, 805, 923
NlaIV	GGNNCC	4 cut(s)	61, 181, 260, 1031
NmeAIII	GCCGAG	1 cut(s)	217
NmuCI	GTSAC	1 cut(s)	830
PalAI	GGCGCGCC	1 cut(s)	22
PauI	GCGCGC	1 cut(s)	22
PceI	AGGCCT	1 cut(s)	427
PciSI	GCTCTTC	1 cut(s)	237
PcsI	WCGNNNNNNNCGW	2 cut(s)	195, 738
PctI	GAATGC	1 cut(s)	1042
PfeI	GAWTC	4 cut(s)	67, 134, 308, 775
PflFI	GACNNNGTC	1 cut(s)	467
PfoI	TCCNGGA	1 cut(s)	442
PkrI	GCNGC	3 cut(s)	38, 64, 115
PleI	GAGTC	1 cut(s)	202
PluTI	GGCGCC	1 cut(s)	63
PpsI	GAGTC	1 cut(s)	202
PsiI	TTATAA	1 cut(s)	563
Psp6I	CCWGG	1 cut(s)	442
PspFI	CCCAGC	1 cut(s)	842
PspGI	CCWGG	1 cut(s)	442
PspN4I	GGNNCC	4 cut(s)	61, 181, 260, 1031
PspPI	GGNCC	3 cut(s)	179, 259, 341
PstNI	CAGNNNCTG	1 cut(s)	932
PsuI	RGATCY	1 cut(s)	1029
PsyI	GACNNNGTC	1 cut(s)	467
PteI	GCGCGC	1 cut(s)	22
PvuII	CAGCTG	1 cut(s)	1079
RsaI	GTAC	3 cut(s)	315, 716, 918
RsaNI	GTAC	3 cut(s)	314, 715, 917
SapI	GCTCTTC	1 cut(s)	237
SaqAI	TTAA	3 cut(s)	405, 687, 866
SatI	GCNGC	3 cut(s)	37, 63, 114
Sau3AI	GATC	6 cut(s)	144, 186, 268, 1024, 1029, 1129
Sau96I	GGNCC	3 cut(s)	179, 259, 341
SchI	GAGTC	1 cut(s)	203
ScrFI	CCNGG	3 cut(s)	165, 326, 444
SfaNI	GCATC	2 cut(s)	753, 1103
SfoI	GGCGCC	1 cut(s)	61
SgsI	GGCGCGCC	1 cut(s)	22
SinI	GGWCC	1 cut(s)	259
SmlI	CTYRAG	3 cut(s)	554, 580, 686
SmoI	CTYRAG	3 cut(s)	554, 580, 686
Sse9I	AATT	6 cut(s)	231, 264, 357, 406, 751, 1053
SseBI	AGGCCT	1 cut(s)	427
SsiI	CCGC	2 cut(s)	37, 63
SspDI	GGCGCC	1 cut(s)	59
SspMI	CTAG	5 cut(s)	72, 78, 117, 273, 797
StuI	AGGCCT	1 cut(s)	427
StyD4I	CCNGG	3 cut(s)	163, 324, 442
StyI	CCWWGG	2 cut(s)	619, 1084
TaaI	ACNGT	1 cut(s)	102
TaiI	ACGT	1 cut(s)	255
TaqI	TCGA	2 cut(s)	41, 457
TasI	AATT	6 cut(s)	231, 264, 357, 406, 751, 1053
TatI	WGTACW	1 cut(s)	916
TauI	GCSGC	2 cut(s)	39, 65
TfiI	GAWTC	4 cut(s)	67, 134, 308, 775
Tru1I	TTAA	3 cut(s)	405, 687, 866
Tru9I	TTAA	3 cut(s)	405, 687, 866
TseFI	GTSAC	1 cut(s)	830
TseI	GCWGC	1 cut(s)	113
Tsp45I	GTSAC	1 cut(s)	830
TspDTI	ATGAA	1 cut(s)	366
TspGWI	ACGGA	2 cut(s)	137, 187
Tth111I	GACNNNGTC	1 cut(s)	467
Vha464I	CTTAAG	1 cut(s)	686
VpaK11BI	GGWCC	1 cut(s)	259
XspI	CTAG	5 cut(s)	72, 78, 117, 273, 797

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.