FvH4_6g16070

Isocitrate dehydrogenase (NAD

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
10112409 .. 10116114
3706 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g16070.t4

Sequence Viewer

Length: 1137 bp
ATGGCTTCCCAGCTATTGAGGCGCGTAATCGGAAGCCGCTCCACCACCCACTTTCTCTCCGGCGCCGCGAATCCTTTCCCGTCCTTACTCTCCTCCTCCTCGTCTCCCGCAGCTAGGGTTTTCTCTTCTACCTCCACTCCGATCACCGCCACCCTCTTCCCCGGCGACGGCATCGGCCCCGAGATCGCCGAGTCCGTCAAACAGATATTCAGAGAAGCTGAAGTCCCGATTCAATGGGAAGAACATTATGTTGGGGAGCAAATAGATCCCAGGACGCAGAGTTTTCTGACATGGGAAAGTTTGGAATCAGTACGGAGGAACAAGGTAGGCTTGAAAGGGCCAATGGCCACACCGATTGGGAAAGGTCATCGTTCTTTGAACCTTACACTAAGGAAAGAACTTAACTTGTATGCAAATGTCAGACCTTGTTACAGCCTTCCGGGCTACAAGACTCGTTATGATGATGTTGATCTTGTCACTATCCGTGAGAATACGGAGGGGGAATACAGTGGACTTGAACATCAAGTGGTGAGAGGTGTTGTTGAGAGCCTCAAGATCATTACCCGTCAAGCTAGTTTGAGGGTGGCCGAGTATGCTTTTCATTATGCCCAGGCCCATGGTAGAAAAAGAGTGTCTGCAATTCACAAAGCAAATATAATGCAGAAAACCGATGGCCTTTTTCTCAAGTGTTGCCGTGAGGTTGCAGAGAAGTACCCTGATATAGTATATGAGGAAGTTGTCATTGATAATTGCTGTATGATGCTTGTGAAAAATCCAGCACTTTTCGACGTGTTAGTGATGCCTAACCTATATGGTGATATTATTAGTGACCTTTGCGCTGGGTTGATAGGGGGTCTGGGCTTAACACCAAGCTGCAATATTGGTGAGGGAGGTATTGCCCTGGCTGAAGCTGTACATGGATCAGCACCTGATATCGCTGGAAAGAATTTGGCAAATCCGACTGCTCTGCTTTTGAGTGCTGTCACCATGCTTCGCCATTTGGAGCTCCATGATAAAGCTGATAGGATTCAGGATGCGATCCTGAAGACAATTGCAGAGGGCAAGTACCGTACAGCTGACCTTGGTGGCAAATCTACAACTACTGACTTCACACAAGCAATTATCGGTCATCTTTGA

Protein Analysis

379

Amino Acids

41.28

Weight (kDa)

6.84

Isoelectric Point (pI)

39.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Iso_dh PF00180 51 - 315 5.1e-87 Isocitrate/isopropylmalate dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 62
AccBSI CCGCTC 1 cut(s) 39
AccII CGCG 2 cut(s) 24, 68
AciI CCGC 4 cut(s) 37, 66, 108, 147
AclWI GGATC 3 cut(s) 260, 928, 1033
AcoI YGGCCR 2 cut(s) 345, 585
AcsI RAATTY 1 cut(s) 946
AcuI CTGAAG 3 cut(s) 240, 927, 1064
AcyI GRCGYC 1 cut(s) 63
AfaI GTAC 5 cut(s) 312, 713, 915, 1067, 1072
AfiI CCNNNNNNNGG 2 cut(s) 114, 167
AflIII ACRYGT 1 cut(s) 789
AgsI TTSAA 4 cut(s) 233, 334, 379, 518
AjiI CACGTC 1 cut(s) 790
AjnI CCWGG 3 cut(s) 269, 609, 900
AjuI GAANNNNNNNTTGG 2 cut(s) 234, 266
AluBI AGCT 9 cut(s) 13, 113, 218, 572, 873, 911, 1006, 1019, 1076
AluI AGCT 9 cut(s) 13, 113, 218, 572, 873, 911, 1006, 1019, 1076
Alw21I GWGCWC 1 cut(s) 1008
Alw26I GTCTC 1 cut(s) 108
AlwI GGATC 3 cut(s) 260, 928, 1033
AlwNI CAGNNNCTG 1 cut(s) 929
Ama87I CYCGRG 1 cut(s) 179
AoxI GGCC 6 cut(s) 175, 338, 345, 585, 612, 673
ApeKI GCWGC 2 cut(s) 110, 873
ApoI RAATTY 1 cut(s) 946
Asp700I GAANNNNTTC 1 cut(s) 74
AspLEI GCGC 3 cut(s) 24, 65, 839
AspS9I GGNCC 3 cut(s) 176, 338, 613
AsuC2I CCSGG 2 cut(s) 162, 441
AsuHPI GGTGA 5 cut(s) 136, 541, 827, 896, 976
AvaI CYCGRG 1 cut(s) 179
BalI TGGCCA 1 cut(s) 347
BanI GGYRCC 1 cut(s) 62
BanII GRGCYC 1 cut(s) 1008
BbsI GAAGAC 1 cut(s) 1052
Bbv12I GWGCWC 1 cut(s) 1008
BbvI GCAGC 2 cut(s) 122, 860
BccI CCATC 1 cut(s) 665
BceAI ACGGC 2 cut(s) 184, 678
BcgI CGANNNNNNTGC 2 cut(s) 949, 983
BciT130I CCWGG 3 cut(s) 271, 611, 902
BcnI CCSGG 2 cut(s) 162, 441
BcoDI GTCTC 1 cut(s) 108
BfaI CTAG 2 cut(s) 114, 573
BfoI RGCGCY 1 cut(s) 66
BglI GCCNNNNNGGC 1 cut(s) 441
BisI GCNGC 4 cut(s) 37, 66, 111, 874
BlsI GCNGC 4 cut(s) 38, 67, 112, 875
Bme1390I CCNGG 5 cut(s) 162, 271, 441, 611, 902
BmeT110I CYCGRG 1 cut(s) 179
BmgBI CACGTC 1 cut(s) 790
BmgT120I GGNCC 3 cut(s) 176, 338, 613
BmiI GGNNCC 2 cut(s) 64, 178
BmrFI CCNGG 5 cut(s) 162, 271, 441, 611, 902
BmsI GCATC 4 cut(s) 180, 750, 789, 1024
BpiI GAAGAC 1 cut(s) 1052
BpuEI CTTGAG 2 cut(s) 536, 668
BpuMI CCSGG 2 cut(s) 162, 441
BsaBI GATNNNNATC 1 cut(s) 468
BsaHI GRCGYC 1 cut(s) 63
BsaJI CCNNGG 6 cut(s) 160, 269, 609, 616, 900, 1081
BsaXI ACNNNNNCTCC 4 cut(s) 41, 71, 121, 151
Bsc4I CCNNNNNNNGG 2 cut(s) 114, 167
Bse8I GATNNNNATC 1 cut(s) 468
BseBI CCWGG 3 cut(s) 271, 611, 902
BseDI CCNNGG 6 cut(s) 160, 269, 609, 616, 900, 1081
BseGI GGATG 1 cut(s) 1039
BseJI GATNNNNATC 1 cut(s) 468
BseLI CCNNNNNNNGG 2 cut(s) 114, 167
BseRI GAGGAG 3 cut(s) 82, 85, 88
BseXI GCAGC 2 cut(s) 122, 860
BseYI CCCAGC 2 cut(s) 9, 839
Bsh1236I CGCG 2 cut(s) 24, 68
BshFI GGCC 6 cut(s) 177, 340, 347, 587, 614, 675
BshNI GGYRCC 1 cut(s) 62
BsiHKAI GWGCWC 1 cut(s) 1008
BsiHKCI CYCGRG 1 cut(s) 179
BsiSI CCGG 3 cut(s) 60, 162, 440
BslFI GGGAC 1 cut(s) 209
BslI CCNNNNNNNGG 2 cut(s) 114, 167
BsmAI GTCTC 1 cut(s) 108
BsmBI CGTCTC 1 cut(s) 108
BsmFI GGGAC 1 cut(s) 209
BsnI GGCC 6 cut(s) 177, 340, 347, 587, 614, 675
BsoBI CYCGRG 1 cut(s) 179
Bsp1286I GDGCHC 1 cut(s) 1008
Bsp1407I TGTACA 1 cut(s) 913
Bsp143I GATC 7 cut(s) 141, 183, 265, 469, 555, 920, 1038
Bsp19I CCATGG 1 cut(s) 616
BspACI CCGC 4 cut(s) 37, 66, 108, 147
BspANI GGCC 6 cut(s) 177, 340, 347, 587, 614, 675
BspFNI CGCG 2 cut(s) 24, 68
BspLI GGNNCC 2 cut(s) 64, 178
BspPI GGATC 3 cut(s) 260, 928, 1033
BspT107I GGYRCC 1 cut(s) 62
BsrBI CCGCTC 1 cut(s) 39
BsrGI TGTACA 1 cut(s) 913
BssECI CCNNGG 6 cut(s) 160, 269, 609, 616, 900, 1081
BssMI GATC 7 cut(s) 141, 183, 265, 469, 555, 920, 1038
BssNI GRCGYC 1 cut(s) 63
BssT1I CCWWGG 2 cut(s) 616, 1081
Bst2UI CCWGG 3 cut(s) 271, 611, 902
Bst4CI ACNGT 2 cut(s) 509, 1070
Bst6I CTCTTC 2 cut(s) 130, 161
BstACI GRCGYC 1 cut(s) 63
BstAUI TGTACA 1 cut(s) 913
BstDEI CTNAG 1 cut(s) 389
BstDSI CCRYGG 1 cut(s) 616
BstF5I GGATG 1 cut(s) 1039
BstFNI CGCG 2 cut(s) 24, 68
BstH2I RGCGCY 1 cut(s) 66
BstHHI GCGC 3 cut(s) 24, 65, 839
BstKTI GATC 7 cut(s) 144, 186, 268, 472, 558, 923, 1041
BstMAI GTCTC 1 cut(s) 108
BstMBI GATC 7 cut(s) 141, 183, 265, 469, 555, 920, 1038
BstMWI GCNNNNNNNGC 3 cut(s) 19, 441, 593
BstNI CCWGG 3 cut(s) 271, 611, 902
BstSCI CCNGG 5 cut(s) 160, 269, 439, 609, 900
BstUI CGCG 2 cut(s) 24, 68
BstV1I GCAGC 2 cut(s) 122, 860
BstV2I GAAGAC 1 cut(s) 1052
BstX2I RGATCY 1 cut(s) 265
BstXI CCANNNNNNTGG 1 cut(s) 617
BstYI RGATCY 1 cut(s) 265
BsuRI GGCC 6 cut(s) 177, 340, 347, 587, 614, 675
BtgI CCRYGG 1 cut(s) 616
BtrI CACGTC 1 cut(s) 790
BtsCI GGATG 1 cut(s) 1039
BtsIMutI CAGTG 1 cut(s) 514
CaiI CAGNNNCTG 1 cut(s) 929
CfoI GCGC 3 cut(s) 24, 65, 839
Cfr13I GGNCC 3 cut(s) 176, 338, 613
CseI GACGC 1 cut(s) 283
Csp6I GTAC 5 cut(s) 311, 712, 914, 1066, 1071
CspCI CAANNNNNGTGG 2 cut(s) 337, 372
CviAII CATG 5 cut(s) 291, 617, 917, 988, 1010
CviQI GTAC 5 cut(s) 311, 712, 914, 1066, 1071
DdeI CTNAG 1 cut(s) 389
DinI GGCGCC 1 cut(s) 64
DpnI GATC 7 cut(s) 143, 185, 267, 471, 557, 922, 1040
DpnII GATC 7 cut(s) 141, 183, 265, 469, 555, 920, 1038
EaeI YGGCCR 2 cut(s) 345, 585
Eam1104I CTCTTC 2 cut(s) 130, 161
EarI CTCTTC 2 cut(s) 130, 161
Ecl136II GAGCTC 1 cut(s) 1006
Eco130I CCWWGG 2 cut(s) 616, 1081
Eco24I GRGCYC 1 cut(s) 1008
Eco32I GATATC 1 cut(s) 934
Eco53kI GAGCTC 1 cut(s) 1006
Eco57I CTGAAG 3 cut(s) 240, 927, 1064
Eco88I CYCGRG 1 cut(s) 179
EcoICRI GAGCTC 1 cut(s) 1006
EcoRII CCWGG 3 cut(s) 269, 609, 900
EcoRV GATATC 1 cut(s) 934
EcoT14I CCWWGG 2 cut(s) 616, 1081
EcoT38I GRGCYC 1 cut(s) 1008
EgeI GGCGCC 1 cut(s) 64
EheI GGCGCC 1 cut(s) 64
ErhI CCWWGG 2 cut(s) 616, 1081
Esp3I CGTCTC 1 cut(s) 108
FaeI CATG 5 cut(s) 294, 620, 920, 991, 1013
FalI AAGNNNNNCTT 2 cut(s) 314, 346
FaqI GGGAC 1 cut(s) 209
FatI CATG 5 cut(s) 290, 616, 916, 987, 1009
FauI CCCGC 1 cut(s) 115
Fnu4HI GCNGC 4 cut(s) 37, 66, 111, 874
FokI GGATG 1 cut(s) 1046
FriOI GRGCYC 1 cut(s) 1008
Fsp4HI GCNGC 4 cut(s) 37, 66, 111, 874
FspBI CTAG 2 cut(s) 114, 573
GlaI GCGC 3 cut(s) 23, 64, 838
GluI GCNGC 4 cut(s) 37, 66, 111, 874
GsaI CCCAGC 2 cut(s) 13, 843
HaeII RGCGCY 1 cut(s) 66
HaeIII GGCC 6 cut(s) 177, 340, 347, 587, 614, 675
HapII CCGG 3 cut(s) 60, 162, 440
HgaI GACGC 1 cut(s) 283
HhaI GCGC 3 cut(s) 24, 65, 839
Hin1I GRCGYC 1 cut(s) 63
Hin1II CATG 5 cut(s) 294, 620, 920, 991, 1013
Hin6I GCGC 3 cut(s) 22, 63, 837
HinP1I GCGC 3 cut(s) 22, 63, 837
HinfI GANTC 6 cut(s) 70, 191, 229, 305, 451, 1027
HpaII CCGG 3 cut(s) 60, 162, 440
HphI GGTGA 5 cut(s) 136, 541, 827, 896, 976
Hpy166II GTNNAC 1 cut(s) 512
Hpy188I TCNGA 6 cut(s) 32, 141, 212, 288, 422, 960
Hpy188III TCNNGA 4 cut(s) 226, 553, 1031, 1042
Hpy8I GTNNAC 1 cut(s) 512
Hpy99I CGWCG 2 cut(s) 170, 791
HpyAV CCTTC 1 cut(s) 446
HpyCH4III ACNGT 2 cut(s) 509, 1070
HpyCH4IV ACGT 1 cut(s) 789
HpyCH4V TGCA 6 cut(s) 413, 638, 661, 704, 876, 1055
HpyF10VI GCNNNNNNNGC 3 cut(s) 19, 441, 593
HpyF3I CTNAG 1 cut(s) 389
HpySE526I ACGT 1 cut(s) 789
Hsp92I GRCGYC 1 cut(s) 63
Hsp92II CATG 5 cut(s) 294, 620, 920, 991, 1013
HspAI GCGC 3 cut(s) 22, 63, 837
KasI GGCGCC 1 cut(s) 62
Kzo9I GATC 7 cut(s) 141, 183, 265, 469, 555, 920, 1038
LmnI GCTCC 4 cut(s) 44, 256, 1003, 1011
Lsp1109I GCAGC 2 cut(s) 122, 860
LweI GCATC 4 cut(s) 180, 750, 789, 1024
MaeI CTAG 2 cut(s) 114, 573
MaeII ACGT 1 cut(s) 789
MaeIII GTNAC 4 cut(s) 428, 475, 827, 982
MalI GATC 7 cut(s) 143, 185, 267, 471, 557, 922, 1040
MbiI CCGCTC 1 cut(s) 39
MboI GATC 7 cut(s) 141, 183, 265, 469, 555, 920, 1038
MboII GAAGA 4 cut(s) 117, 148, 251, 1057
MfeI CAATTG 1 cut(s) 1050
MflI RGATCY 1 cut(s) 265
MhlI GDGCHC 1 cut(s) 1008
MlsI TGGCCA 1 cut(s) 347
MluCI AATT 5 cut(s) 639, 748, 946, 1050, 1119
MluNI TGGCCA 1 cut(s) 347
Mly113I GGCGCC 1 cut(s) 63
MlyI GAGTC 2 cut(s) 200, 445
MmeI TCCRAC 1 cut(s) 983
Mox20I TGGCCA 1 cut(s) 347
MroXI GAANNNNTTC 1 cut(s) 74
MscI TGGCCA 1 cut(s) 347
MseI TTAA 2 cut(s) 402, 863
Msp20I TGGCCA 1 cut(s) 347
MspA1I CMGCKG 1 cut(s) 1076
MspI CCGG 3 cut(s) 60, 162, 440
MspR9I CCNGG 5 cut(s) 162, 271, 441, 611, 902
MunI CAATTG 1 cut(s) 1050
MvaI CCWGG 3 cut(s) 271, 611, 902
MvnI CGCG 2 cut(s) 24, 68
MwoI GCNNNNNNNGC 3 cut(s) 19, 441, 593
NarI GGCGCC 1 cut(s) 63
NciI CCSGG 2 cut(s) 162, 441
NcoI CCATGG 1 cut(s) 616
NdeII GATC 7 cut(s) 141, 183, 265, 469, 555, 920, 1038
NlaIII CATG 5 cut(s) 294, 620, 920, 991, 1013
NlaIV GGNNCC 2 cut(s) 64, 178
NmeAIII GCCGAG 2 cut(s) 214, 613
NmuCI GTSAC 3 cut(s) 475, 827, 982
PcsI WCGNNNNNNNCGW 1 cut(s) 192
PdmI GAANNNNTTC 1 cut(s) 74
PfeI GAWTC 4 cut(s) 70, 229, 305, 1027
PkrI GCNGC 4 cut(s) 38, 67, 112, 875
PleI GAGTC 2 cut(s) 199, 445
PluTI GGCGCC 1 cut(s) 66
PpsI GAGTC 2 cut(s) 199, 445
Psp124BI GAGCTC 1 cut(s) 1008
Psp6I CCWGG 3 cut(s) 269, 609, 900
PspFI CCCAGC 2 cut(s) 9, 839
PspGI CCWGG 3 cut(s) 269, 609, 900
PspN4I GGNNCC 2 cut(s) 64, 178
PspPI GGNCC 3 cut(s) 176, 338, 613
PstNI CAGNNNCTG 1 cut(s) 929
PsuI RGATCY 1 cut(s) 265
PvuII CAGCTG 1 cut(s) 1076
RsaI GTAC 5 cut(s) 312, 713, 915, 1067, 1072
RsaNI GTAC 5 cut(s) 311, 712, 914, 1066, 1071
SacI GAGCTC 1 cut(s) 1008
SaqAI TTAA 2 cut(s) 402, 863
SatI GCNGC 4 cut(s) 37, 66, 111, 874
Sau3AI GATC 7 cut(s) 141, 183, 265, 469, 555, 920, 1038
Sau96I GGNCC 3 cut(s) 176, 338, 613
SchI GAGTC 2 cut(s) 200, 445
ScrFI CCNGG 5 cut(s) 162, 271, 441, 611, 902
SduI GDGCHC 1 cut(s) 1008
SfaNI GCATC 4 cut(s) 180, 750, 789, 1024
SfoI GGCGCC 1 cut(s) 64
SmlI CTYRAG 2 cut(s) 551, 683
SmoI CTYRAG 2 cut(s) 551, 683
Sse9I AATT 5 cut(s) 639, 748, 946, 1050, 1119
SsiI CCGC 4 cut(s) 37, 66, 108, 147
SspDI GGCGCC 1 cut(s) 62
SspI AATATT 1 cut(s) 880
SspMI CTAG 2 cut(s) 114, 573
SstI GAGCTC 1 cut(s) 1008
StyD4I CCNGG 5 cut(s) 160, 269, 439, 609, 900
StyI CCWWGG 2 cut(s) 616, 1081
TaaI ACNGT 2 cut(s) 509, 1070
TaiI ACGT 1 cut(s) 792
TaqI TCGA 1 cut(s) 786
TaqII GACCGA 1 cut(s) 1115
TasI AATT 5 cut(s) 639, 748, 946, 1050, 1119
TatI WGTACW 1 cut(s) 913
TauI GCSGC 2 cut(s) 39, 68
TfiI GAWTC 4 cut(s) 70, 229, 305, 1027
Tru1I TTAA 2 cut(s) 402, 863
Tru9I TTAA 2 cut(s) 402, 863
TscAI CASTG 1 cut(s) 514
TseFI GTSAC 3 cut(s) 475, 827, 982
TseI GCWGC 2 cut(s) 110, 873
Tsp45I GTSAC 3 cut(s) 475, 827, 982
TspDTI ATGAA 1 cut(s) 590
TspGWI ACGGA 4 cut(s) 184, 328, 473, 509
TspRI CASTG 1 cut(s) 514
XapI RAATTY 1 cut(s) 946
XmnI GAANNNNTTC 1 cut(s) 74
XspI CTAG 2 cut(s) 114, 573
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.