Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0009443

Physical Location & Seq

Genomic Coordinates Reverse (-)

33866729 .. 33870195

Gene Structure 3467 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00411380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

ATGGCTTCCCAGCTATTGAGGCGCGTAATCGGAAGCCGCTCCTCCACCCACTTTCTCTCCGGCACCGCGAATCCCTGCCCGACCTTGCTCTCATCGTCGTCTCCGGCAGCTAGGGTTTTCTCGTCTACTTCCACTCCGATCACTGCCACGCTCTTCCCCGGCGACGGTATCGGCCCCGAGATCGCCGAGTCCGTCAAACAGATATTCAGAGAAGCTGAAGTCCCAATTGAATGGGAAGAGCACTATGTTGGGGAGCAAATAGATCCCAGGACTCAGAGTTTTCTGACATGGGAAAGTTTAGAGTCGGTACGAAGGAATAAGGTGGGCTTGAAAGGGCCGATGGCCACACCAATTGGGAAGGGTCATCGTTCATTGAACCTTACACTGAGGAAAGAATTGAATTTGTATGCAAATGTCAGACCTTGTTACAGCCTTCCTGGCTATAAGACTCGATATGATGATGTGGATCTTATCACTATCCGTGAGAATACGGAGGGGGAATACAGTGGACTTGAACATCAAGTGGTGAGAGGTGTTGTTGAGAGCCTCAAGATCATTACCCGTCAAGCTAGCTTGAGGGTGGCTGAGTATGCTTTTCATTATGCCAAGGCCCATGGAAGAGAAAGAGTGTCTGCAATACACAAAGCAAATATAATGCAGAAAACCGACGGTCTTTTTCTCAAGTGTTGCCGTGAAGTTGCAGAGAAGTACCCTGATATAAAGTATGAGGAAGTTGTCATTGATAATTGCTGTATGATGCTTGTGAAGAATCCAGCACTTTTTGATGTGCTAGTGATGCCTAACCTCTATGGTGATATTATTAGTGACCTTTGCGCTGGGTTGATAGGGGGTTTGGGCTTAACACCAAGCTGCAATATTGGTGAGGGAGGTATTGCCCTTGCTGAAGCTGTACATGGATCAGCACCTGATATTGCTGGAAAGAATTTGGCAAATCCAACTGCTCTGCTTTTGAGTGCTGTTACCATGCTTCGCCATTTGGAGCTCCATGATAAAGCTGATCGGATCCAGGATGCGATCCTGAAGACAATTGCAGAGGGCAAGTACCGTACTGCTGACCTTGGTGGCAAATCAACAACTACTGACTTTACACAAGCGATTTGTGATCATCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004448 GO:0004449 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0006102 GO:0008144 GO:0008150 GO:0008152 GO:0008270 GO:0009060 GO:0009507 GO:0009536 GO:0009987 GO:0015980 GO:0016491 GO:0016614 GO:0016616 GO:0016999 GO:0017076 GO:0017144 GO:0019752 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0046872 GO:0046914 GO:0055114 GO:0071704 GO:0072350 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00020 ko01100 ko01110 ko01120 ko01130 ko01200 ko01210 ko01230 map00020 map01100 map01110 map01120 map01130 map01200 map01210 map01230

Pfam Domains

Protein Families

Iso_dh

Protein Analysis

377

Amino Acids

41.27

Weight (kDa)

6.43

Isoelectric Point (pI)

39.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Iso_dh	PF00180	50 - 373	1.4e-108	Isocitrate/isopropylmalate dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009443)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09810 AT5G03290
fragaria_vesca	FvH4_6g16070 FvH4_6g16070 FvH4_6g16070 FvH4_6g16070
malus_domestica	MD04G1096100.v1.1 MD12G1116100.v1.1
prunus_persica	Prupe.6G235200_v2.0.a1
pyrus_communis	pycom04g09100
rosa_chinensis	RchiOBHm_Chr3g0469901
rosa_laevigata	RLG00000024314
rosa_multiflora	Rmu_sc0009708.1_g000001
rosa_roxburghii	Rroxscaffold_6G00411380
rosa_rugosa	Rorug03G0105200 Rorug03G0105300 Rorug03G0105400
rosa_samantha	Rh3AG154300 Rh3BG178400 Rh3CG169000 Rh3DG196800
rosa_wichuraiana	Rw3G014530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	62
AccBSI	CCGCTC	1 cut(s)	39
AccI	GTMKAC	1 cut(s)	125
AccII	CGCG	2 cut(s)	24, 68
AciI	CCGC	2 cut(s)	37, 66
AclWI	GGATC	6 cut(s)	257, 474, 925, 1018, 1030, 1031
AcoI	YGGCCR	1 cut(s)	342
AcsI	RAATTY	2 cut(s)	400, 943
AcuI	CTGAAG	3 cut(s)	237, 924, 1061
AfaI	GTAC	5 cut(s)	309, 710, 912, 1064, 1069
AfiI	CCNNNNNNNGG	1 cut(s)	164
AgsI	TTSAA	5 cut(s)	230, 331, 376, 400, 515
AjnI	CCWGG	3 cut(s)	266, 436, 1026
AluBI	AGCT	9 cut(s)	13, 110, 215, 569, 573, 870, 908, 1003, 1016
AluI	AGCT	9 cut(s)	13, 110, 215, 569, 573, 870, 908, 1003, 1016
Alw21I	GWGCWC	2 cut(s)	243, 1005
Alw26I	GTCTC	1 cut(s)	105
AlwI	GGATC	6 cut(s)	257, 474, 925, 1018, 1030, 1031
AlwNI	CAGNNNCTG	1 cut(s)	926
Ama87I	CYCGRG	1 cut(s)	176
AoxI	GGCC	4 cut(s)	172, 335, 342, 609
ApeKI	GCWGC	2 cut(s)	107, 870
ApoI	RAATTY	2 cut(s)	400, 943
AspLEI	GCGC	2 cut(s)	24, 836
AspS9I	GGNCC	3 cut(s)	173, 335, 610
AsuC2I	CCSGG	1 cut(s)	159
AsuHPI	GGTGA	3 cut(s)	538, 824, 893
AsuNHI	GCTAGC	1 cut(s)	569
AvaI	CYCGRG	1 cut(s)	176
BalI	TGGCCA	1 cut(s)	344
BamHI	GGATCC	1 cut(s)	1023
BanI	GGYRCC	1 cut(s)	62
BanII	GRGCYC	1 cut(s)	1005
BbsI	GAAGAC	1 cut(s)	1049
Bbv12I	GWGCWC	2 cut(s)	243, 1005
BbvI	GCAGC	2 cut(s)	119, 857
BccI	CCATC	1 cut(s)	334
BceAI	ACGGC	1 cut(s)	675
BciT130I	CCWGG	3 cut(s)	268, 438, 1028
BclI	TGATCA	1 cut(s)	1123
BcnI	CCSGG	1 cut(s)	159
BcoDI	GTCTC	1 cut(s)	105
BfaI	CTAG	3 cut(s)	111, 570, 791
BglI	GCCNNNNNGGC	1 cut(s)	438
BisI	GCNGC	3 cut(s)	37, 108, 871
BlsI	GCNGC	3 cut(s)	38, 109, 872
Bme1390I	CCNGG	4 cut(s)	159, 268, 438, 1028
BmeT110I	CYCGRG	1 cut(s)	176
BmgT120I	GGNCC	3 cut(s)	173, 335, 610
BmiI	GGNNCC	3 cut(s)	64, 175, 1025
BmrFI	CCNGG	4 cut(s)	159, 268, 438, 1028
BmsI	GCATC	3 cut(s)	747, 786, 1021
BmtI	GCTAGC	1 cut(s)	573
BpiI	GAAGAC	1 cut(s)	1049
BpuEI	CTTGAG	3 cut(s)	533, 595, 665
BpuMI	CCSGG	1 cut(s)	159
BsaBI	GATNNNNATC	1 cut(s)	465
BsaJI	CCNNGG	5 cut(s)	157, 266, 606, 613, 1078
BsaXI	ACNNNNNCTCC	4 cut(s)	41, 71, 118, 148
Bsc4I	CCNNNNNNNGG	1 cut(s)	164
Bse8I	GATNNNNATC	1 cut(s)	465
BseBI	CCWGG	3 cut(s)	268, 438, 1028
BseDI	CCNNGG	5 cut(s)	157, 266, 606, 613, 1078
BseGI	GGATG	1 cut(s)	1036
BseJI	GATNNNNATC	1 cut(s)	465
BseLI	CCNNNNNNNGG	1 cut(s)	164
BseMII	CTCAG	3 cut(s)	287, 377, 576
BseRI	GAGGAG	1 cut(s)	31
BseXI	GCAGC	2 cut(s)	119, 857
BseYI	CCCAGC	2 cut(s)	9, 836
Bsh1236I	CGCG	2 cut(s)	24, 68
BshFI	GGCC	4 cut(s)	174, 337, 344, 611
BshNI	GGYRCC	1 cut(s)	62
BsiHKAI	GWGCWC	2 cut(s)	243, 1005
BsiHKCI	CYCGRG	1 cut(s)	176
BsiSI	CCGG	3 cut(s)	60, 104, 159
BslFI	GGGAC	1 cut(s)	206
BslI	CCNNNNNNNGG	1 cut(s)	164
BsmAI	GTCTC	1 cut(s)	105
BsmBI	CGTCTC	1 cut(s)	105
BsmFI	GGGAC	1 cut(s)	206
BsnI	GGCC	4 cut(s)	174, 337, 344, 611
BsoBI	CYCGRG	1 cut(s)	176
Bsp1286I	GDGCHC	2 cut(s)	243, 1005
Bsp1407I	TGTACA	1 cut(s)	910
Bsp19I	CCATGG	1 cut(s)	613
BspACI	CCGC	2 cut(s)	37, 66
BspANI	GGCC	4 cut(s)	174, 337, 344, 611
BspCNI	CTCAG	3 cut(s)	286, 378, 577
BspFNI	CGCG	2 cut(s)	24, 68
BspLI	GGNNCC	3 cut(s)	64, 175, 1025
BspOI	GCTAGC	1 cut(s)	573
BspPI	GGATC	6 cut(s)	257, 474, 925, 1018, 1030, 1031
BspQI	GCTCTTC	2 cut(s)	158, 231
BspT107I	GGYRCC	1 cut(s)	62
BsrBI	CCGCTC	1 cut(s)	39
BsrGI	TGTACA	1 cut(s)	910
BssECI	CCNNGG	5 cut(s)	157, 266, 606, 613, 1078
BssT1I	CCWWGG	3 cut(s)	606, 613, 1078
Bst2UI	CCWGG	3 cut(s)	268, 438, 1028
Bst4CI	ACNGT	4 cut(s)	167, 506, 671, 1067
Bst6I	CTCTTC	3 cut(s)	158, 231, 613
BstAUI	TGTACA	1 cut(s)	910
BstC8I	GCNNGC	1 cut(s)	571
BstDEI	CTNAG	3 cut(s)	273, 386, 585
BstDSI	CCRYGG	1 cut(s)	613
BstF5I	GGATG	1 cut(s)	1036
BstFNI	CGCG	2 cut(s)	24, 68
BstHHI	GCGC	2 cut(s)	24, 836
BstMAI	GTCTC	1 cut(s)	105
BstMWI	GCNNNNNNNGC	4 cut(s)	19, 438, 590, 796
BstNI	CCWGG	3 cut(s)	268, 438, 1028
BstSCI	CCNGG	4 cut(s)	157, 266, 436, 1026
BstUI	CGCG	2 cut(s)	24, 68
BstV1I	GCAGC	2 cut(s)	119, 857
BstV2I	GAAGAC	1 cut(s)	1049
BstX2I	RGATCY	3 cut(s)	262, 466, 1023
BstXI	CCANNNNNNTGG	1 cut(s)	231
BstYI	RGATCY	3 cut(s)	262, 466, 1023
BsuRI	GGCC	4 cut(s)	174, 337, 344, 611
BtgI	CCRYGG	1 cut(s)	613
BtsCI	GGATG	1 cut(s)	1036
BtsI	GCAGTG	1 cut(s)	141
BtsIMutI	CAGTG	3 cut(s)	141, 383, 511
Cac8I	GCNNGC	1 cut(s)	571
CaiI	CAGNNNCTG	1 cut(s)	926
CfoI	GCGC	2 cut(s)	24, 836
Cfr13I	GGNCC	3 cut(s)	173, 335, 610
Csp6I	GTAC	5 cut(s)	308, 709, 911, 1063, 1068
CspCI	CAANNNNNGTGG	2 cut(s)	334, 369
CviAII	CATG	5 cut(s)	288, 614, 914, 985, 1007
CviQI	GTAC	5 cut(s)	308, 709, 911, 1063, 1068
DdeI	CTNAG	3 cut(s)	273, 386, 585
EaeI	YGGCCR	1 cut(s)	342
Eam1104I	CTCTTC	3 cut(s)	158, 231, 613
EarI	CTCTTC	3 cut(s)	158, 231, 613
Ecl136II	GAGCTC	1 cut(s)	1003
Eco130I	CCWWGG	3 cut(s)	606, 613, 1078
Eco24I	GRGCYC	1 cut(s)	1005
Eco53kI	GAGCTC	1 cut(s)	1003
Eco57I	CTGAAG	3 cut(s)	237, 924, 1061
Eco88I	CYCGRG	1 cut(s)	176
EcoICRI	GAGCTC	1 cut(s)	1003
EcoRII	CCWGG	3 cut(s)	266, 436, 1026
EcoT14I	CCWWGG	3 cut(s)	606, 613, 1078
EcoT38I	GRGCYC	1 cut(s)	1005
ErhI	CCWWGG	3 cut(s)	606, 613, 1078
Esp3I	CGTCTC	1 cut(s)	105
FaeI	CATG	5 cut(s)	291, 617, 917, 988, 1010
FalI	AAGNNNNNCTT	2 cut(s)	311, 343
FaqI	GGGAC	1 cut(s)	206
FatI	CATG	5 cut(s)	287, 613, 913, 984, 1006
FbaI	TGATCA	1 cut(s)	1123
FblI	GTMKAC	1 cut(s)	125
Fnu4HI	GCNGC	3 cut(s)	37, 108, 871
FokI	GGATG	1 cut(s)	1043
FriOI	GRGCYC	1 cut(s)	1005
Fsp4HI	GCNGC	3 cut(s)	37, 108, 871
FspBI	CTAG	3 cut(s)	111, 570, 791
GlaI	GCGC	2 cut(s)	23, 835
GluI	GCNGC	3 cut(s)	37, 108, 871
GsaI	CCCAGC	2 cut(s)	13, 840
HaeIII	GGCC	4 cut(s)	174, 337, 344, 611
HapII	CCGG	3 cut(s)	60, 104, 159
HhaI	GCGC	2 cut(s)	24, 836
Hin1II	CATG	5 cut(s)	291, 617, 917, 988, 1010
Hin6I	GCGC	2 cut(s)	22, 834
HinP1I	GCGC	2 cut(s)	22, 834
HinfI	GANTC	6 cut(s)	70, 188, 271, 302, 448, 769
HpaII	CCGG	3 cut(s)	60, 104, 159
HphI	GGTGA	3 cut(s)	538, 824, 893
Hpy166II	GTNNAC	2 cut(s)	126, 509
Hpy188I	TCNGA	8 cut(s)	32, 138, 209, 276, 285, 419, 1023, 1133
Hpy188III	TCNNGA	2 cut(s)	550, 1039
Hpy8I	GTNNAC	2 cut(s)	126, 509
Hpy99I	CGWCG	3 cut(s)	100, 167, 671
HpyAV	CCTTC	3 cut(s)	306, 352, 443
HpyCH4III	ACNGT	4 cut(s)	167, 506, 671, 1067
HpyCH4V	TGCA	6 cut(s)	410, 635, 658, 701, 873, 1052
HpyF10VI	GCNNNNNNNGC	4 cut(s)	19, 438, 590, 796
HpyF3I	CTNAG	3 cut(s)	273, 386, 585
Hsp92II	CATG	5 cut(s)	291, 617, 917, 988, 1010
HspAI	GCGC	2 cut(s)	22, 834
Ksp22I	TGATCA	1 cut(s)	1123
LguI	GCTCTTC	2 cut(s)	158, 231
LmnI	GCTCC	4 cut(s)	44, 253, 1000, 1008
Lsp1109I	GCAGC	2 cut(s)	119, 857
LweI	GCATC	3 cut(s)	747, 786, 1021
MaeI	CTAG	3 cut(s)	111, 570, 791
MaeIII	GTNAC	3 cut(s)	425, 824, 979
MbiI	CCGCTC	1 cut(s)	39
MboII	GAAGA	5 cut(s)	145, 248, 630, 778, 1054
MfeI	CAATTG	3 cut(s)	225, 351, 1047
MflI	RGATCY	3 cut(s)	262, 466, 1023
MhlI	GDGCHC	2 cut(s)	243, 1005
MlsI	TGGCCA	1 cut(s)	344
MluCI	AATT	7 cut(s)	225, 351, 395, 400, 745, 943, 1047
MluNI	TGGCCA	1 cut(s)	344
MlyI	GAGTC	4 cut(s)	197, 265, 311, 442
MmeI	TCCRAC	1 cut(s)	980
Mox20I	TGGCCA	1 cut(s)	344
MscI	TGGCCA	1 cut(s)	344
MseI	TTAA	1 cut(s)	860
Msp20I	TGGCCA	1 cut(s)	344
MspI	CCGG	3 cut(s)	60, 104, 159
MspR9I	CCNGG	4 cut(s)	159, 268, 438, 1028
MunI	CAATTG	3 cut(s)	225, 351, 1047
MvaI	CCWGG	3 cut(s)	268, 438, 1028
MvnI	CGCG	2 cut(s)	24, 68
MwoI	GCNNNNNNNGC	4 cut(s)	19, 438, 590, 796
NciI	CCSGG	1 cut(s)	159
NcoI	CCATGG	1 cut(s)	613
NheI	GCTAGC	1 cut(s)	569
NlaIII	CATG	5 cut(s)	291, 617, 917, 988, 1010
NlaIV	GGNNCC	3 cut(s)	64, 175, 1025
NmeAIII	GCCGAG	1 cut(s)	211
NmuCI	GTSAC	1 cut(s)	824
PciSI	GCTCTTC	2 cut(s)	158, 231
PcsI	WCGNNNNNNNCGW	1 cut(s)	189
PfeI	GAWTC	2 cut(s)	70, 769
PfoI	TCCNGGA	1 cut(s)	1026
PkrI	GCNGC	3 cut(s)	38, 109, 872
PleI	GAGTC	4 cut(s)	196, 265, 310, 442
PpsI	GAGTC	4 cut(s)	196, 265, 310, 442
Psp124BI	GAGCTC	1 cut(s)	1005
Psp6I	CCWGG	3 cut(s)	266, 436, 1026
PspFI	CCCAGC	2 cut(s)	9, 836
PspGI	CCWGG	3 cut(s)	266, 436, 1026
PspN4I	GGNNCC	3 cut(s)	64, 175, 1025
PspPI	GGNCC	3 cut(s)	173, 335, 610
PstNI	CAGNNNCTG	1 cut(s)	926
PsuI	RGATCY	3 cut(s)	262, 466, 1023
RsaI	GTAC	5 cut(s)	309, 710, 912, 1064, 1069
RsaNI	GTAC	5 cut(s)	308, 709, 911, 1063, 1068
SacI	GAGCTC	1 cut(s)	1005
SapI	GCTCTTC	2 cut(s)	158, 231
SaqAI	TTAA	1 cut(s)	860
SatI	GCNGC	3 cut(s)	37, 108, 871
Sau96I	GGNCC	3 cut(s)	173, 335, 610
SchI	GAGTC	4 cut(s)	197, 265, 311, 442
ScrFI	CCNGG	4 cut(s)	159, 268, 438, 1028
SduI	GDGCHC	2 cut(s)	243, 1005
SfaNI	GCATC	3 cut(s)	747, 786, 1021
SmlI	CTYRAG	3 cut(s)	548, 574, 680
SmoI	CTYRAG	3 cut(s)	548, 574, 680
Sse9I	AATT	7 cut(s)	225, 351, 395, 400, 745, 943, 1047
SsiI	CCGC	2 cut(s)	37, 66
SspI	AATATT	1 cut(s)	877
SspMI	CTAG	3 cut(s)	111, 570, 791
SstI	GAGCTC	1 cut(s)	1005
StyD4I	CCNGG	4 cut(s)	157, 266, 436, 1026
StyI	CCWWGG	3 cut(s)	606, 613, 1078
TaaI	ACNGT	4 cut(s)	167, 506, 671, 1067
TaqI	TCGA	1 cut(s)	451
TasI	AATT	7 cut(s)	225, 351, 395, 400, 745, 943, 1047
TatI	WGTACW	1 cut(s)	910
TauI	GCSGC	1 cut(s)	39
TfiI	GAWTC	2 cut(s)	70, 769
Tru1I	TTAA	1 cut(s)	860
Tru9I	TTAA	1 cut(s)	860
TscAI	CASTG	3 cut(s)	148, 390, 511
TseFI	GTSAC	1 cut(s)	824
TseI	GCWGC	2 cut(s)	107, 870
Tsp45I	GTSAC	1 cut(s)	824
TspDTI	ATGAA	2 cut(s)	360, 587
TspGWI	ACGGA	3 cut(s)	181, 470, 506
TspRI	CASTG	3 cut(s)	148, 390, 511
XapI	RAATTY	2 cut(s)	400, 943
XmiI	GTMKAC	1 cut(s)	125
XspI	CTAG	3 cut(s)	111, 570, 791

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.