pycom04g09100

Isocitrate dehydrogenase (NAD

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
Physical Location & Seq
Reverse (-)
11380392 .. 11383287
2896 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g09100.1

Sequence Viewer

Length: 1215 bp
ATGGATTCCTATAATCTGTTTGATCATTTGGTTGTAAGAAGAAGACCAAAAGTTTCCGATCGCCAAATTACACACAATCAGCTGCAAATGGCTTCCCACATATTGAGGCGCGCCTCCAGCCACTTTCTCTCCGGTGCCGTCAACCCTGCCCATAGCTTGCTGTCGTCATCGTCCCCGTCGTCTCAGGCAGCTAGGGTTTTCTCCTCCGCTTCCACTCCGATCCGAGCCACCCTCTTCCCCGGCGACGGTATCGGCCCCGAGATTGCCGAGTCCGTCAAACAGGTGTTCAGAGAAGCTGACGTGCCAATTGAATGGGAAGAACATTATGTTGGGACCGAAATAGATCCGAGAACGCAGAGTTTCCTAACATGGGAAAGTTTAGAGTCAGTGCGGAAAAATGGGGTAGGCTTGAAAGGGCCAATGGCCACACCAATTGGGAAAGGTCATCGTTCCTTGAACCTTACTCTGAGGAAAGAACTTAATTTGTATGCAAATGTCAGGCCTTGTTACAGCCTTCCTGGCTACAAAACTCGATATGACAATGTCGATCTTATCACTATTCGTGAAAATACAGAGGGAGAGTATAGTGGACTTGAGCATCAAGTGGTGAGAGGTGTTGTTGAGAGCCTCAAGATCATCACCCGTCAGGCAAGCTTGAGGGTGGCTGAGTATGCTTTTCATTATGCTAAGGCCCATGGAAGAGAGAGAGTCTCTGCAATTCACAAAGCAAACATTATGCAGAAAACTGATGGTCTTTTTCTAAAGTGTTGTCGTGAGGTTGCAGAGAAGTACCCTGAAATCAAATATGAGGAAGTTGTCATTGATAATTGCTGTATGATGCTTGTGAAGAATCCAGCACTTTTTGATGTGCTAGTGATGCCTAACCTTTATGGTGATATTATAAGTGATCTTTGTGCTGGGTTGATAGGCGGTTTGGGCCTAACGCCAAGCTGCAATATTGGAGAGGGAGGCATCGCCCTTGCTGAAGCTGTACATGGTTCAGCACCTGATATTGCTGGAAAGAATTTGGCAAATCCGACCGCCCTGCTTTTAAGTGCTGTTACAATGCTACGCCATTTGGAGCTCCATGATAAAGCAGATCGATCCAAAATGCAATCCTCAGCACAATTGCAGAGGGGAAGTTCCGAACCGCTGACCTTGGTGGCTCTTCATCAACTTCTGACTTTACGCAGGCAATCGTCGATCGATCTTTGA

Protein Analysis

405

Amino Acids

44.56

Weight (kDa)

8.11

Isoelectric Point (pI)

51.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Iso_dh PF00180 77 - 368 6e-98 Isocitrate/isopropylmalate dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 902
AccB1I GGYRCC 1 cut(s) 134
AccII CGCG 1 cut(s) 111
AciI CCGC 5 cut(s) 207, 391, 930, 1041, 1151
AclWI GGATC 3 cut(s) 214, 338, 1098
AcoI YGGCCR 1 cut(s) 423
AcsI RAATTY 1 cut(s) 1024
AcuI CTGAAG 1 cut(s) 1005
AfaI GTAC 2 cut(s) 791, 993
AfiI CCNNNNNNNGG 2 cut(s) 245, 370
AgsI TTSAA 3 cut(s) 311, 412, 457
AjiI CACGTC 1 cut(s) 301
AjnI CCWGG 1 cut(s) 517
AjuI GAANNNNNNNTTGG 2 cut(s) 312, 344
AluBI AGCT 8 cut(s) 82, 156, 191, 296, 654, 951, 989, 1084
AluI AGCT 8 cut(s) 82, 156, 191, 296, 654, 951, 989, 1084
Alw21I GWGCWC 1 cut(s) 1086
Alw26I GTCTC 2 cut(s) 186, 715
AlwI GGATC 3 cut(s) 214, 338, 1098
AlwNI CAGNNNCTG 1 cut(s) 1007
Ama87I CYCGRG 1 cut(s) 257
AoxI GGCC 6 cut(s) 253, 416, 423, 500, 690, 937
ApeKI GCWGC 3 cut(s) 82, 188, 951
ApoI RAATTY 1 cut(s) 1024
AscI GGCGCGCC 1 cut(s) 109
AspLEI GCGC 2 cut(s) 111, 113
AspS9I GGNCC 5 cut(s) 254, 333, 416, 691, 937
AsuC2I CCSGG 1 cut(s) 240
AsuHPI GGTGA 3 cut(s) 619, 631, 905
AvaI CYCGRG 1 cut(s) 257
AvaII GGWCC 1 cut(s) 333
BalI TGGCCA 1 cut(s) 425
BanI GGYRCC 1 cut(s) 134
BanII GRGCYC 1 cut(s) 1086
BbsI GAAGAC 1 cut(s) 49
Bbv12I GWGCWC 1 cut(s) 1086
BbvCI CCTCAGC 1 cut(s) 1120
BbvI GCAGC 3 cut(s) 69, 200, 938
BccI CCATC 1 cut(s) 743
BceAI ACGGC 1 cut(s) 122
BcgI CGANNNNNNTGC 2 cut(s) 1027, 1061
BciT130I CCWGG 1 cut(s) 519
BclI TGATCA 1 cut(s) 22
BcnI CCSGG 1 cut(s) 240
BcoDI GTCTC 2 cut(s) 186, 715
BfaI CTAG 2 cut(s) 192, 872
BglI GCCNNNNNGGC 1 cut(s) 519
BisI GCNGC 3 cut(s) 83, 189, 952
BlsI GCNGC 3 cut(s) 84, 190, 953
Bme1390I CCNGG 2 cut(s) 240, 519
Bme18I GGWCC 1 cut(s) 333
BmeT110I CYCGRG 1 cut(s) 257
BmgBI CACGTC 1 cut(s) 301
BmgT120I GGNCC 5 cut(s) 254, 333, 416, 691, 937
BmiI GGNNCC 3 cut(s) 136, 256, 334
BmrFI CCNGG 2 cut(s) 240, 519
BmsI GCATC 4 cut(s) 607, 828, 867, 981
BpiI GAAGAC 1 cut(s) 49
BplI GAGNNNNNCTC 4 cut(s) 216, 248, 695, 727
BpmI CTGGAG 1 cut(s) 100
Bpu10I CCTNAGC 2 cut(s) 687, 1120
BpuEI CTTGAG 3 cut(s) 614, 614, 676
BpuMI CCSGG 1 cut(s) 240
Bsa29I ATCGAT 2 cut(s) 1102, 1206
BsaJI CCNNGG 3 cut(s) 238, 694, 1158
BsaWI WCCGGW 1 cut(s) 131
BsaXI ACNNNNNCTCC 2 cut(s) 113, 143
Bsc4I CCNNNNNNNGG 2 cut(s) 245, 370
BseBI CCWGG 1 cut(s) 519
BseCI ATCGAT 2 cut(s) 1102, 1206
BseDI CCNNGG 3 cut(s) 238, 694, 1158
BseLI CCNNNNNNNGG 2 cut(s) 245, 370
BseMII CTCAG 4 cut(s) 197, 458, 657, 1134
BsePI GCGCGC 1 cut(s) 109
BseRI GAGGAG 1 cut(s) 193
BseXI GCAGC 3 cut(s) 69, 200, 938
BseYI CCCAGC 1 cut(s) 917
Bsh1236I CGCG 1 cut(s) 111
Bsh1285I CGRYCG 3 cut(s) 61, 1041, 1206
BshFI GGCC 6 cut(s) 255, 418, 425, 502, 692, 939
BshNI GGYRCC 1 cut(s) 134
BshVI ATCGAT 2 cut(s) 1102, 1206
BsiEI CGRYCG 3 cut(s) 61, 1041, 1206
BsiHKAI GWGCWC 1 cut(s) 1086
BsiHKCI CYCGRG 1 cut(s) 257
BsiSI CCGG 2 cut(s) 132, 240
BslFI GGGAC 2 cut(s) 157, 346
BslI CCNNNNNNNGG 2 cut(s) 245, 370
BsmAI GTCTC 2 cut(s) 186, 715
BsmBI CGTCTC 1 cut(s) 186
BsmFI GGGAC 2 cut(s) 157, 346
BsnI GGCC 6 cut(s) 255, 418, 425, 502, 692, 939
BsoBI CYCGRG 1 cut(s) 257
Bsp1286I GDGCHC 1 cut(s) 1086
Bsp1407I TGTACA 1 cut(s) 991
Bsp19I CCATGG 1 cut(s) 694
BspACI CCGC 5 cut(s) 207, 391, 930, 1041, 1151
BspANI GGCC 6 cut(s) 255, 418, 425, 502, 692, 939
BspCNI CTCAG 4 cut(s) 196, 459, 658, 1133
BspDI ATCGAT 2 cut(s) 1102, 1206
BspFNI CGCG 1 cut(s) 111
BspLI GGNNCC 3 cut(s) 136, 256, 334
BspPI GGATC 3 cut(s) 214, 338, 1098
BspQI GCTCTTC 1 cut(s) 1173
BspT107I GGYRCC 1 cut(s) 134
BsrGI TGTACA 1 cut(s) 991
BssECI CCNNGG 3 cut(s) 238, 694, 1158
BssHII GCGCGC 1 cut(s) 109
BssT1I CCWWGG 2 cut(s) 694, 1158
Bst2UI CCWGG 1 cut(s) 519
Bst4CI ACNGT 1 cut(s) 248
Bst6I CTCTTC 3 cut(s) 239, 694, 1173
BstAUI TGTACA 1 cut(s) 991
BstC8I GCNNGC 4 cut(s) 111, 158, 652, 1193
BstDEI CTNAG 5 cut(s) 183, 467, 666, 687, 1120
BstDSI CCRYGG 1 cut(s) 694
BstFNI CGCG 1 cut(s) 111
BstHHI GCGC 2 cut(s) 111, 113
BstMAI GTCTC 2 cut(s) 186, 715
BstMCI CGRYCG 3 cut(s) 61, 1041, 1206
BstMWI GCNNNNNNNGC 5 cut(s) 117, 519, 671, 877, 936
BstNI CCWGG 1 cut(s) 519
BstSCI CCNGG 2 cut(s) 238, 517
BstUI CGCG 1 cut(s) 111
BstV1I GCAGC 3 cut(s) 69, 200, 938
BstV2I GAAGAC 1 cut(s) 49
BstX2I RGATCY 1 cut(s) 343
BstXI CCANNNNNNTGG 1 cut(s) 312
BstYI RGATCY 1 cut(s) 343
Bsu15I ATCGAT 2 cut(s) 1102, 1206
BsuRI GGCC 6 cut(s) 255, 418, 425, 502, 692, 939
BsuTUI ATCGAT 2 cut(s) 1102, 1206
BtgI CCRYGG 1 cut(s) 694
BtgZI GCGATG 1 cut(s) 958
BtrI CACGTC 1 cut(s) 301
BtsIMutI CAGTG 1 cut(s) 393
Cac8I GCNNGC 4 cut(s) 111, 158, 652, 1193
CaiI CAGNNNCTG 1 cut(s) 1007
CfoI GCGC 2 cut(s) 111, 113
Cfr13I GGNCC 5 cut(s) 254, 333, 416, 691, 937
ClaI ATCGAT 2 cut(s) 1102, 1206
Csp6I GTAC 2 cut(s) 790, 992
CspCI CAANNNNNGTGG 2 cut(s) 415, 450
CviAII CATG 4 cut(s) 369, 695, 995, 1088
CviQI GTAC 2 cut(s) 790, 992
DdeI CTNAG 5 cut(s) 183, 467, 666, 687, 1120
EaeI YGGCCR 1 cut(s) 423
Eam1104I CTCTTC 3 cut(s) 239, 694, 1173
EarI CTCTTC 3 cut(s) 239, 694, 1173
Ecl136II GAGCTC 1 cut(s) 1084
Eco130I CCWWGG 2 cut(s) 694, 1158
Eco147I AGGCCT 1 cut(s) 502
Eco24I GRGCYC 1 cut(s) 1086
Eco47I GGWCC 1 cut(s) 333
Eco53kI GAGCTC 1 cut(s) 1084
Eco57I CTGAAG 1 cut(s) 1005
Eco88I CYCGRG 1 cut(s) 257
EcoICRI GAGCTC 1 cut(s) 1084
EcoRII CCWGG 1 cut(s) 517
EcoT14I CCWWGG 2 cut(s) 694, 1158
EcoT38I GRGCYC 1 cut(s) 1086
ErhI CCWWGG 2 cut(s) 694, 1158
Esp3I CGTCTC 1 cut(s) 186
FaeI CATG 4 cut(s) 372, 698, 998, 1091
FaqI GGGAC 2 cut(s) 157, 346
FatI CATG 4 cut(s) 368, 694, 994, 1087
FbaI TGATCA 1 cut(s) 22
Fnu4HI GCNGC 3 cut(s) 83, 189, 952
FriOI GRGCYC 1 cut(s) 1086
Fsp4HI GCNGC 3 cut(s) 83, 189, 952
FspBI CTAG 2 cut(s) 192, 872
GlaI GCGC 2 cut(s) 110, 112
GluI GCNGC 3 cut(s) 83, 189, 952
GsaI CCCAGC 1 cut(s) 921
GsuI CTGGAG 1 cut(s) 100
HaeIII GGCC 6 cut(s) 255, 418, 425, 502, 692, 939
HapII CCGG 2 cut(s) 132, 240
HhaI GCGC 2 cut(s) 111, 113
Hin1II CATG 4 cut(s) 372, 698, 998, 1091
Hin6I GCGC 2 cut(s) 109, 111
HinP1I GCGC 2 cut(s) 109, 111
HincII GTYRAC 1 cut(s) 142
HindII GTYRAC 1 cut(s) 142
HindIII AAGCTT 1 cut(s) 652
HinfI GANTC 5 cut(s) 5, 269, 383, 708, 850
HpaII CCGG 2 cut(s) 132, 240
HphI GGTGA 3 cut(s) 619, 631, 905
Hpy166II GTNNAC 2 cut(s) 142, 590
Hpy188I TCNGA 9 cut(s) 58, 219, 224, 290, 348, 468, 1038, 1147, 1182
Hpy188III TCNNGA 3 cut(s) 563, 631, 773
Hpy8I GTNNAC 2 cut(s) 142, 590
Hpy99I CGWCG 3 cut(s) 181, 248, 1204
HpyAV CCTTC 1 cut(s) 524
HpyCH4III ACNGT 1 cut(s) 248
HpyCH4IV ACGT 1 cut(s) 300
HpyCH4V TGCA 8 cut(s) 85, 491, 716, 739, 782, 954, 1114, 1132
HpyF10VI GCNNNNNNNGC 5 cut(s) 117, 519, 671, 877, 936
HpyF3I CTNAG 5 cut(s) 183, 467, 666, 687, 1120
HpySE526I ACGT 1 cut(s) 300
Hsp92II CATG 4 cut(s) 372, 698, 998, 1091
HspAI GCGC 2 cut(s) 109, 111
Ksp22I TGATCA 1 cut(s) 22
LguI GCTCTTC 1 cut(s) 1173
LmnI GCTCC 2 cut(s) 1081, 1089
Lsp1109I GCAGC 3 cut(s) 69, 200, 938
LweI GCATC 4 cut(s) 607, 828, 867, 981
MaeI CTAG 2 cut(s) 192, 872
MaeII ACGT 1 cut(s) 300
MaeIII GTNAC 2 cut(s) 506, 1060
MboII GAAGA 7 cut(s) 51, 54, 226, 329, 711, 859, 1160
MfeI CAATTG 3 cut(s) 306, 432, 1127
MflI RGATCY 1 cut(s) 343
MhlI GDGCHC 1 cut(s) 1086
MlsI TGGCCA 1 cut(s) 425
MluCI AATT 8 cut(s) 66, 306, 432, 481, 717, 826, 1024, 1127
MluNI TGGCCA 1 cut(s) 425
MlyI GAGTC 3 cut(s) 278, 392, 717
MmeI TCCRAC 1 cut(s) 1061
Mox20I TGGCCA 1 cut(s) 425
MscI TGGCCA 1 cut(s) 425
MseI TTAA 2 cut(s) 480, 1052
Msp20I TGGCCA 1 cut(s) 425
MspA1I CMGCKG 2 cut(s) 82, 1153
MspI CCGG 2 cut(s) 132, 240
MspR9I CCNGG 2 cut(s) 240, 519
MunI CAATTG 3 cut(s) 306, 432, 1127
MvaI CCWGG 1 cut(s) 519
MvnI CGCG 1 cut(s) 111
MwoI GCNNNNNNNGC 5 cut(s) 117, 519, 671, 877, 936
NciI CCSGG 1 cut(s) 240
NcoI CCATGG 1 cut(s) 694
NlaIII CATG 4 cut(s) 372, 698, 998, 1091
NlaIV GGNNCC 3 cut(s) 136, 256, 334
NmeAIII GCCGAG 1 cut(s) 292
PalAI GGCGCGCC 1 cut(s) 109
PauI GCGCGC 1 cut(s) 109
PceI AGGCCT 1 cut(s) 502
PciSI GCTCTTC 1 cut(s) 1173
PcsI WCGNNNNNNNCGW 1 cut(s) 176
PfeI GAWTC 2 cut(s) 5, 850
PflFI GACNNNGTC 1 cut(s) 542
PkrI GCNGC 3 cut(s) 84, 190, 953
Ple19I CGATCG 2 cut(s) 61, 1206
PleI GAGTC 3 cut(s) 277, 391, 716
PpsI GAGTC 3 cut(s) 277, 391, 716
PsiI TTATAA 1 cut(s) 902
Psp124BI GAGCTC 1 cut(s) 1086
Psp6I CCWGG 1 cut(s) 517
PspFI CCCAGC 1 cut(s) 917
PspGI CCWGG 1 cut(s) 517
PspN4I GGNNCC 3 cut(s) 136, 256, 334
PspPI GGNCC 5 cut(s) 254, 333, 416, 691, 937
PstNI CAGNNNCTG 1 cut(s) 1007
PsuI RGATCY 1 cut(s) 343
PsyI GACNNNGTC 1 cut(s) 542
PteI GCGCGC 1 cut(s) 109
PvuI CGATCG 2 cut(s) 61, 1206
PvuII CAGCTG 1 cut(s) 82
RsaI GTAC 2 cut(s) 791, 993
RsaNI GTAC 2 cut(s) 790, 992
SacI GAGCTC 1 cut(s) 1086
SapI GCTCTTC 1 cut(s) 1173
SaqAI TTAA 2 cut(s) 480, 1052
SatI GCNGC 3 cut(s) 83, 189, 952
Sau96I GGNCC 5 cut(s) 254, 333, 416, 691, 937
SchI GAGTC 3 cut(s) 278, 392, 717
ScrFI CCNGG 2 cut(s) 240, 519
SduI GDGCHC 1 cut(s) 1086
SfaNI GCATC 4 cut(s) 607, 828, 867, 981
SgsI GGCGCGCC 1 cut(s) 109
SinI GGWCC 1 cut(s) 333
SmlI CTYRAG 3 cut(s) 593, 629, 655
SmoI CTYRAG 3 cut(s) 593, 629, 655
Sse9I AATT 8 cut(s) 66, 306, 432, 481, 717, 826, 1024, 1127
SseBI AGGCCT 1 cut(s) 502
SsiI CCGC 5 cut(s) 207, 391, 930, 1041, 1151
SspI AATATT 1 cut(s) 958
SspMI CTAG 2 cut(s) 192, 872
SstI GAGCTC 1 cut(s) 1086
StuI AGGCCT 1 cut(s) 502
StyD4I CCNGG 2 cut(s) 238, 517
StyI CCWWGG 2 cut(s) 694, 1158
TaaI ACNGT 1 cut(s) 248
TaiI ACGT 1 cut(s) 303
TaqI TCGA 5 cut(s) 532, 546, 1102, 1202, 1206
TaqII GACCGA 1 cut(s) 350
TasI AATT 8 cut(s) 66, 306, 432, 481, 717, 826, 1024, 1127
TatI WGTACW 1 cut(s) 991
TfiI GAWTC 2 cut(s) 5, 850
Tru1I TTAA 2 cut(s) 480, 1052
Tru9I TTAA 2 cut(s) 480, 1052
TscAI CASTG 1 cut(s) 393
TseI GCWGC 3 cut(s) 82, 188, 951
TspDTI ATGAA 2 cut(s) 668, 1160
TspGWI ACGGA 1 cut(s) 262
TspRI CASTG 1 cut(s) 393
Tth111I GACNNNGTC 1 cut(s) 542
VpaK11BI GGWCC 1 cut(s) 333
XapI RAATTY 1 cut(s) 1024
XspI CTAG 2 cut(s) 192, 872
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.