AT3G09925

pollen Ole e 1 allergen and extensin family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0015362
Physical Location & Seq
Reverse (-)
3051609 .. 3052850
1242 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G09925.1

Sequence Viewer

Length: 516 bp
ATGGCGCAGAGGATCACAACATTGGTTCTGCTAATAGAGATATTGTTTCTGGTGAGTTGTGTGACTCATATCACTACGACAGCAGCGTATAACAATGGAGATAAGATTCACGTCGCCGGAAAAGTAATGTGTCAAGATTGTTCTCTGAACTACGACGAATGGATCAACGGTTCTGAACCCATCAAAGGGGCAGTGGTATCAATCACTTGTATGGACGAAAGGAGAAGAGTGAGCTACTATGGCAGCGATTTGACCGATGAGAGAGGCCAGTTCGATCTAATGGTCAACAAAGTCCTCTCCCACGGCAAGGTTCTCAAGCCTCAACTTTGTAATGTCCGGCTCGTGTCTTCTCCGGACCTGTCATGTAACATTCCCACCAATTTTGGGAACGGTCAAACCGGAGTGAAGCTAGTTCGACCATTCACAGTTTTCAGGGATCTGGTTAAGTATGTGGTTGGACCATTTTATTATACCACGCCAATGTGTGAGACGCCTAAATTTGAAAACAACTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pollen_Ole_e_I

Protein Analysis

171

Amino Acids

19.21

Weight (kDa)

7.56

Isoelectric Point (pI)

33.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pollen_Ole_e_1 PF01190 38 - 134 1.9e-24 Pollen protein Ole e 1 like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015362)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G09925
fragaria_vesca FvH4_6g17250
malus_domestica MD12G1102700.v1.1 MD14G1096900.v1.1
prunus_persica Prupe.7G122800_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0471351
rosa_laevigata RLG00000024184
rosa_multiflora Rmu_sc0006582.1_g000024 Rmu_sc0010513.1_g000008
rosa_roxburghii Rroxscaffold_6G00410040
rosa_rugosa Rorug03G0117300
rosa_samantha Rh3AG166900 Rh3BG192300 Rh3CG182600 Rh3DG183500
rosa_wichuraiana Rw3G015700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 352
AclWI GGATC 3 cut(s) 20, 170, 444
AcsI RAATTY 1 cut(s) 497
AcyI GRCGYC 1 cut(s) 491
AfiI CCNNNNNNNGG 4 cut(s) 185, 186, 307, 384
AgsI TTSAA 1 cut(s) 503
AjiI CACGTC 1 cut(s) 112
AloI GAACNNNNNNTCC 2 cut(s) 154, 186
AluBI AGCT 2 cut(s) 234, 409
AluI AGCT 2 cut(s) 234, 409
Alw26I GTCTC 1 cut(s) 482
AlwI GGATC 3 cut(s) 20, 170, 444
Aor13HI TCCGGA 1 cut(s) 352
AoxI GGCC 1 cut(s) 265
ApeKI GCWGC 2 cut(s) 83, 243
ApoI RAATTY 1 cut(s) 497
AspLEI GCGC 1 cut(s) 7
AspS9I GGNCC 2 cut(s) 355, 458
AsuHPI GGTGA 1 cut(s) 64
AvaII GGWCC 2 cut(s) 355, 458
BauI CACGAG 1 cut(s) 341
BbsI GAAGAC 1 cut(s) 339
BbvI GCAGC 2 cut(s) 95, 255
BccI CCATC 1 cut(s) 188
BceAI ACGGC 1 cut(s) 319
BcoDI GTCTC 1 cut(s) 482
BfaI CTAG 1 cut(s) 410
BisI GCNGC 2 cut(s) 84, 244
BlsI GCNGC 2 cut(s) 85, 245
Bme18I GGWCC 2 cut(s) 355, 458
BmgBI CACGTC 1 cut(s) 112
BmgT120I GGNCC 2 cut(s) 355, 458
BpiI GAAGAC 1 cut(s) 339
BpuEI CTTGAG 1 cut(s) 299
BsaHI GRCGYC 1 cut(s) 491
BsaJI CCNNGG 1 cut(s) 301
BsaWI WCCGGW 2 cut(s) 352, 398
Bsc4I CCNNNNNNNGG 4 cut(s) 185, 186, 307, 384
Bse1I ACTGG 1 cut(s) 268
BseAI TCCGGA 1 cut(s) 352
BseDI CCNNGG 1 cut(s) 301
BseLI CCNNNNNNNGG 4 cut(s) 185, 186, 307, 384
BseNI ACTGG 1 cut(s) 268
BseXI GCAGC 2 cut(s) 95, 255
BshFI GGCC 1 cut(s) 267
BsiSI CCGG 4 cut(s) 117, 337, 353, 399
BslI CCNNNNNNNGG 4 cut(s) 185, 186, 307, 384
BsmAI GTCTC 1 cut(s) 482
BsmBI CGTCTC 1 cut(s) 482
BsnI GGCC 1 cut(s) 267
Bsp13I TCCGGA 1 cut(s) 352
Bsp143I GATC 4 cut(s) 12, 162, 274, 436
BspANI GGCC 1 cut(s) 267
BspEI TCCGGA 1 cut(s) 352
BspPI GGATC 3 cut(s) 20, 170, 444
BsrI ACTGG 1 cut(s) 268
BssECI CCNNGG 1 cut(s) 301
BssMI GATC 4 cut(s) 12, 162, 274, 436
BssNI GRCGYC 1 cut(s) 491
BssSI CACGAG 1 cut(s) 341
Bst2BI CACGAG 1 cut(s) 341
Bst4CI ACNGT 3 cut(s) 170, 392, 427
Bst6I CTCTTC 1 cut(s) 220
BstACI GRCGYC 1 cut(s) 491
BstDSI CCRYGG 1 cut(s) 301
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 4 cut(s) 15, 165, 277, 439
BstMAI GTCTC 1 cut(s) 482
BstMBI GATC 4 cut(s) 12, 162, 274, 436
BstMWI GCNNNNNNNGC 1 cut(s) 240
BstV1I GCAGC 2 cut(s) 95, 255
BstV2I GAAGAC 1 cut(s) 339
BstX2I RGATCY 1 cut(s) 436
BstYI RGATCY 1 cut(s) 436
BsuRI GGCC 1 cut(s) 267
BtgI CCRYGG 1 cut(s) 301
BtrI CACGTC 1 cut(s) 112
BtsI GCAGTG 1 cut(s) 198
BtsIMutI CAGTG 1 cut(s) 198
CfoI GCGC 1 cut(s) 7
Cfr13I GGNCC 2 cut(s) 355, 458
CseI GACGC 1 cut(s) 499
CspCI CAANNNNNGTGG 2 cut(s) 364, 399
CviAII CATG 1 cut(s) 363
CviJI RGCY 5 cut(s) 234, 267, 319, 340, 409
CviKI_1 RGCY 5 cut(s) 234, 267, 319, 340, 409
DpnI GATC 4 cut(s) 14, 164, 276, 438
DpnII GATC 4 cut(s) 12, 162, 274, 436
Eam1104I CTCTTC 1 cut(s) 220
EarI CTCTTC 1 cut(s) 220
Eco47I GGWCC 2 cut(s) 355, 458
Esp3I CGTCTC 1 cut(s) 482
FaeI CATG 1 cut(s) 366
FaiI YATR 7 cut(s) 69, 90, 212, 240, 364, 450, 471
FatI CATG 1 cut(s) 362
Fnu4HI GCNGC 2 cut(s) 84, 244
Fsp4HI GCNGC 2 cut(s) 84, 244
FspBI CTAG 1 cut(s) 410
GlaI GCGC 1 cut(s) 6
GluI GCNGC 2 cut(s) 84, 244
HaeIII GGCC 1 cut(s) 267
HapII CCGG 4 cut(s) 117, 337, 353, 399
HgaI GACGC 1 cut(s) 499
HhaI GCGC 1 cut(s) 7
Hin1I GRCGYC 1 cut(s) 491
Hin1II CATG 1 cut(s) 366
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HincII GTYRAC 1 cut(s) 286
HindII GTYRAC 1 cut(s) 286
HinfI GANTC 2 cut(s) 64, 106
HpaII CCGG 4 cut(s) 117, 337, 353, 399
HphI GGTGA 1 cut(s) 64
Hpy166II GTNNAC 1 cut(s) 286
Hpy188I TCNGA 2 cut(s) 147, 175
Hpy188III TCNNGA 2 cut(s) 134, 353
Hpy8I GTNNAC 1 cut(s) 286
Hpy99I CGWCG 2 cut(s) 116, 158
HpyCH4III ACNGT 3 cut(s) 170, 392, 427
HpyCH4IV ACGT 1 cut(s) 111
HpyF10VI GCNNNNNNNGC 1 cut(s) 240
HpySE526I ACGT 1 cut(s) 111
Hsp92I GRCGYC 1 cut(s) 491
Hsp92II CATG 1 cut(s) 366
HspAI GCGC 1 cut(s) 5
Kpn2I TCCGGA 1 cut(s) 352
Kzo9I GATC 4 cut(s) 12, 162, 274, 436
LpnPI CCDG 9 cut(s) 35, 130, 281, 350, 366, 371, 412, 418, 425
Lsp1109I GCAGC 2 cut(s) 95, 255
MaeI CTAG 1 cut(s) 410
MaeII ACGT 1 cut(s) 111
MaeIII GTNAC 2 cut(s) 61, 365
MalI GATC 4 cut(s) 14, 164, 276, 438
MboI GATC 4 cut(s) 12, 162, 274, 436
MboII GAAGA 2 cut(s) 237, 339
MflI RGATCY 1 cut(s) 436
MluCI AATT 2 cut(s) 379, 497
MlyI GAGTC 1 cut(s) 58
MmeI TCCRAC 1 cut(s) 436
MnlI CCTC 4 cut(s) 3, 257, 305, 330
MroI TCCGGA 1 cut(s) 352
MseI TTAA 1 cut(s) 444
MslI CAYNNNNRTG 2 cut(s) 209, 479
MspI CCGG 4 cut(s) 117, 337, 353, 399
MwoI GCNNNNNNNGC 1 cut(s) 240
NdeII GATC 4 cut(s) 12, 162, 274, 436
NlaIII CATG 1 cut(s) 366
NmuCI GTSAC 1 cut(s) 61
PcsI WCGNNNNNNNCGW 1 cut(s) 83
PfeI GAWTC 1 cut(s) 106
PkrI GCNGC 2 cut(s) 85, 245
PleI GAGTC 1 cut(s) 58
PpsI GAGTC 1 cut(s) 58
PspPI GGNCC 2 cut(s) 355, 458
PsuI RGATCY 1 cut(s) 436
RseI CAYNNNNRTG 2 cut(s) 209, 479
SaqAI TTAA 1 cut(s) 444
SatI GCNGC 2 cut(s) 84, 244
Sau3AI GATC 4 cut(s) 12, 162, 274, 436
Sau96I GGNCC 2 cut(s) 355, 458
SchI GAGTC 1 cut(s) 58
SetI ASST 5 cut(s) 114, 236, 312, 360, 411
SinI GGWCC 2 cut(s) 355, 458
SmiMI CAYNNNNRTG 2 cut(s) 209, 479
SmlI CTYRAG 1 cut(s) 314
SmoI CTYRAG 1 cut(s) 314
Sse9I AATT 2 cut(s) 379, 497
SspMI CTAG 1 cut(s) 410
TaaI ACNGT 3 cut(s) 170, 392, 427
TaiI ACGT 1 cut(s) 114
TaqI TCGA 2 cut(s) 273, 415
TaqII GACCGA 1 cut(s) 269
TasI AATT 2 cut(s) 379, 497
TfiI GAWTC 1 cut(s) 106
Tru1I TTAA 1 cut(s) 444
Tru9I TTAA 1 cut(s) 444
TscAI CASTG 1 cut(s) 198
TseFI GTSAC 1 cut(s) 61
TseI GCWGC 2 cut(s) 83, 243
Tsp45I GTSAC 1 cut(s) 61
TspRI CASTG 1 cut(s) 198
VpaK11BI GGWCC 2 cut(s) 355, 458
XapI RAATTY 1 cut(s) 497
XspI CTAG 1 cut(s) 410
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.