Rh3AG166900

Pistil-specific extensin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0015362
Physical Location & Seq
Reverse (-)
15427208 .. 15444072
16865 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG166900.1

Sequence Viewer

Length: 624 bp
ATGGCGATTCTGAAATATGCAGTAGTACTACTGATGATTGTATTGGGTTGCATCCATAATACAGTAGAAGCTTCGTTTAGTGAGGAACCAAAAGTCATACGTGTAGATGGGAAAGTACTATGCCAGGACTGCACCCAAGGTTGGAATGAATGGATTCATGGTGCCAGACCCATCAAAGGTGGTAAAGTATCTGTTACGTGTATGGATGAGAGAAGAAGAGTTGTGTACTATGGAAGCGATTTGACGGATGAGATGGGCCAGTTCGACTTGACCATAAACAAGTACACTATCCATGGTAGAGAACTCCAGGCTAATGGATGCTCGGTGAGGTTGGTGTCTTCCCCAGATGCTACTTGTAACGTTCTAACTGATTTTGCCGGTGGGCGTTCCGGAGTTAAGCTCCAACGCCCGAATTTGGTGTACCGGGATTTGGTCAAGTACACTCTTGGGACACCATCAACATTTTCTTCAGAGAATACCTCATCATCCTCATCATTAAATTCCCGGTCACTATGTATAACGTCTTCAAAATCTGGATCATCACTGTCAGATTCTTCACTTTCTTCGGCAAACCTTCTTCATTATAACTCTTTTCCCCATAAATCTAATGTCATATCTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pollen_Ole_e_I

Protein Analysis

207

Amino Acids

22.58

Weight (kDa)

8.46

Isoelectric Point (pI)

50.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pollen_Ole_e_1 PF01190 35 - 131 7.4e-25 Pollen protein Ole e 1 like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015362)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G09925
fragaria_vesca FvH4_6g17250
malus_domestica MD12G1102700.v1.1 MD14G1096900.v1.1
prunus_persica Prupe.7G122800_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0471351
rosa_laevigata RLG00000024184
rosa_multiflora Rmu_sc0006582.1_g000024 Rmu_sc0010513.1_g000008
rosa_roxburghii Rroxscaffold_6G00410040
rosa_rugosa Rorug03G0117300
rosa_samantha Rh3AG166900 Rh3BG192300 Rh3CG182600 Rh3DG183500
rosa_wichuraiana Rw3G015700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 585
AccB1I GGYRCC 1 cut(s) 161
AccIII TCCGGA 1 cut(s) 389
AclI AACGTT 1 cut(s) 360
AclWI GGATC 1 cut(s) 544
AcsI RAATTY 2 cut(s) 412, 499
AcuI CTGAAG 1 cut(s) 453
AfaI GTAC 6 cut(s) 27, 117, 227, 284, 422, 440
AfiI CCNNNNNNNGG 4 cut(s) 141, 176, 415, 430
AflIII ACRYGT 2 cut(s) 100, 197
AgsI TTSAA 1 cut(s) 528
AjnI CCWGG 2 cut(s) 123, 306
AluBI AGCT 2 cut(s) 71, 400
AluI AGCT 2 cut(s) 71, 400
AlwI GGATC 1 cut(s) 544
Aor13HI TCCGGA 1 cut(s) 389
AoxI GGCC 1 cut(s) 256
ApoI RAATTY 2 cut(s) 412, 499
Asp700I GAANNNNTTC 1 cut(s) 153
AspS9I GGNCC 1 cut(s) 256
AsuC2I CCSGG 2 cut(s) 425, 505
AsuHPI GGTGA 1 cut(s) 337
BanI GGYRCC 1 cut(s) 161
BarI GAAGNNNNNNTAC 2 cut(s) 508, 540
BbsI GAAGAC 2 cut(s) 330, 516
BccI CCATC 4 cut(s) 101, 179, 247, 463
BciT130I CCWGG 2 cut(s) 125, 308
BcnI CCSGG 2 cut(s) 425, 505
BmcAI AGTACT 2 cut(s) 27, 117
Bme1390I CCNGG 4 cut(s) 125, 308, 425, 505
BmgT120I GGNCC 1 cut(s) 256
BmiI GGNNCC 2 cut(s) 87, 163
BmrFI CCNGG 4 cut(s) 125, 308, 425, 505
BmsI GCATC 3 cut(s) 60, 308, 337
BpiI GAAGAC 2 cut(s) 330, 516
BplI GAGNNNNNCTC 4 cut(s) 384, 416, 464, 496
BpmI CTGGAG 1 cut(s) 290
BpuMI CCSGG 2 cut(s) 425, 505
BsaAI YACGTR 2 cut(s) 101, 198
BsaJI CCNNGG 2 cut(s) 136, 292
BsaWI WCCGGW 1 cut(s) 389
Bsc4I CCNNNNNNNGG 4 cut(s) 141, 176, 415, 430
Bse118I RCCGGY 1 cut(s) 377
Bse1I ACTGG 1 cut(s) 259
BseAI TCCGGA 1 cut(s) 389
BseBI CCWGG 2 cut(s) 125, 308
BseDI CCNNGG 2 cut(s) 136, 292
BseGI GGATG 5 cut(s) 51, 211, 253, 323, 485
BseLI CCNNNNNNNGG 4 cut(s) 141, 176, 415, 430
BseNI ACTGG 1 cut(s) 259
BsgI GTGCAG 1 cut(s) 115
BshFI GGCC 1 cut(s) 258
BshNI GGYRCC 1 cut(s) 161
BsiSI CCGG 4 cut(s) 378, 390, 424, 505
BslFI GGGAC 1 cut(s) 463
BslI CCNNNNNNNGG 4 cut(s) 141, 176, 415, 430
BsmFI GGGAC 1 cut(s) 463
BsnI GGCC 1 cut(s) 258
Bsp13I TCCGGA 1 cut(s) 389
Bsp143I GATC 1 cut(s) 536
Bsp19I CCATGG 1 cut(s) 292
BspANI GGCC 1 cut(s) 258
BspEI TCCGGA 1 cut(s) 389
BspLI GGNNCC 2 cut(s) 87, 163
BspPI GGATC 1 cut(s) 544
BspT107I GGYRCC 1 cut(s) 161
BsrFI RCCGGY 1 cut(s) 377
BsrI ACTGG 1 cut(s) 259
BssAI RCCGGY 1 cut(s) 377
BssECI CCNNGG 2 cut(s) 136, 292
BssMI GATC 1 cut(s) 536
BssT1I CCWWGG 2 cut(s) 136, 292
Bst2UI CCWGG 2 cut(s) 125, 308
Bst4CI ACNGT 2 cut(s) 64, 546
Bst6I CTCTTC 1 cut(s) 211
BstBAI YACGTR 2 cut(s) 101, 198
BstDSI CCRYGG 1 cut(s) 292
BstF5I GGATG 5 cut(s) 51, 211, 253, 323, 485
BstKTI GATC 1 cut(s) 539
BstMBI GATC 1 cut(s) 536
BstMWI GCNNNNNNNGC 1 cut(s) 129
BstNI CCWGG 2 cut(s) 125, 308
BstSCI CCNGG 4 cut(s) 123, 306, 423, 503
BstV2I GAAGAC 2 cut(s) 330, 516
BstXI CCANNNNNNTGG 1 cut(s) 314
BsuRI GGCC 1 cut(s) 258
BtgI CCRYGG 1 cut(s) 292
BtsCI GGATG 5 cut(s) 51, 211, 253, 323, 485
BtsIMutI CAGTG 1 cut(s) 542
Cfr10I RCCGGY 1 cut(s) 377
Cfr13I GGNCC 1 cut(s) 256
Csp6I GTAC 6 cut(s) 26, 116, 226, 283, 421, 439
CviAII CATG 2 cut(s) 158, 293
CviJI RGCY 4 cut(s) 71, 258, 311, 400
CviKI_1 RGCY 4 cut(s) 71, 258, 311, 400
CviQI GTAC 6 cut(s) 26, 116, 226, 283, 421, 439
DpnI GATC 1 cut(s) 538
DpnII GATC 1 cut(s) 536
Eam1104I CTCTTC 1 cut(s) 211
EarI CTCTTC 1 cut(s) 211
Eco130I CCWWGG 2 cut(s) 136, 292
Eco57I CTGAAG 1 cut(s) 453
EcoRII CCWGG 2 cut(s) 123, 306
EcoT14I CCWWGG 2 cut(s) 136, 292
ErhI CCWWGG 2 cut(s) 136, 292
FaeI CATG 2 cut(s) 161, 296
FaqI GGGAC 1 cut(s) 463
FatI CATG 2 cut(s) 157, 292
FokI GGATG 5 cut(s) 38, 218, 260, 330, 472
GsuI CTGGAG 1 cut(s) 290
HaeIII GGCC 1 cut(s) 258
HapII CCGG 4 cut(s) 378, 390, 424, 505
Hin1II CATG 2 cut(s) 161, 296
HindIII AAGCTT 1 cut(s) 69
HinfI GANTC 3 cut(s) 7, 154, 551
HpaII CCGG 4 cut(s) 378, 390, 424, 505
HphI GGTGA 1 cut(s) 337
Hpy166II GTNNAC 4 cut(s) 226, 285, 421, 441
Hpy188I TCNGA 3 cut(s) 12, 472, 550
Hpy188III TCNNGA 2 cut(s) 390, 534
Hpy8I GTNNAC 4 cut(s) 226, 285, 421, 441
HpyAV CCTTC 1 cut(s) 584
HpyCH4III ACNGT 2 cut(s) 64, 546
HpyCH4IV ACGT 4 cut(s) 100, 197, 360, 521
HpyCH4V TGCA 3 cut(s) 20, 51, 132
HpyF10VI GCNNNNNNNGC 1 cut(s) 129
HpySE526I ACGT 4 cut(s) 100, 197, 360, 521
Hsp92II CATG 2 cut(s) 161, 296
Kpn2I TCCGGA 1 cut(s) 389
Kzo9I GATC 1 cut(s) 536
LmnI GCTCC 1 cut(s) 405
LweI GCATC 3 cut(s) 60, 308, 337
MaeII ACGT 4 cut(s) 100, 197, 360, 521
MaeIII GTNAC 3 cut(s) 193, 356, 507
MalI GATC 1 cut(s) 538
MboI GATC 1 cut(s) 536
MboII GAAGA 8 cut(s) 225, 228, 330, 459, 516, 546, 555, 569
MluCI AATT 2 cut(s) 412, 499
MmeI TCCRAC 2 cut(s) 122, 427
MnlI CCTC 4 cut(s) 76, 321, 490, 499
MroI TCCGGA 1 cut(s) 389
MroXI GAANNNNTTC 1 cut(s) 153
MseI TTAA 2 cut(s) 396, 497
MspI CCGG 4 cut(s) 378, 390, 424, 505
MspR9I CCNGG 4 cut(s) 125, 308, 425, 505
MvaI CCWGG 2 cut(s) 125, 308
MwoI GCNNNNNNNGC 1 cut(s) 129
NciI CCSGG 2 cut(s) 425, 505
NcoI CCATGG 1 cut(s) 292
NdeII GATC 1 cut(s) 536
NlaIII CATG 2 cut(s) 161, 296
NlaIV GGNNCC 2 cut(s) 87, 163
NmuCI GTSAC 1 cut(s) 507
PdmI GAANNNNTTC 1 cut(s) 153
PfeI GAWTC 3 cut(s) 7, 154, 551
Ppu21I YACGTR 2 cut(s) 101, 198
PsiI TTATAA 1 cut(s) 585
Psp1406I AACGTT 1 cut(s) 360
Psp6I CCWGG 2 cut(s) 123, 306
PspGI CCWGG 2 cut(s) 123, 306
PspN4I GGNNCC 2 cut(s) 87, 163
PspPI GGNCC 1 cut(s) 256
RsaI GTAC 6 cut(s) 27, 117, 227, 284, 422, 440
RsaNI GTAC 6 cut(s) 26, 116, 226, 283, 421, 439
SaqAI TTAA 2 cut(s) 396, 497
Sau3AI GATC 1 cut(s) 536
Sau96I GGNCC 1 cut(s) 256
ScaI AGTACT 2 cut(s) 27, 117
ScrFI CCNGG 4 cut(s) 125, 308, 425, 505
SfaNI GCATC 3 cut(s) 60, 308, 337
Sse9I AATT 2 cut(s) 412, 499
StyD4I CCNGG 4 cut(s) 123, 306, 423, 503
StyI CCWWGG 2 cut(s) 136, 292
TaaI ACNGT 2 cut(s) 64, 546
TaiI ACGT 4 cut(s) 103, 200, 363, 524
TaqI TCGA 1 cut(s) 264
TasI AATT 2 cut(s) 412, 499
TatI WGTACW 5 cut(s) 25, 115, 225, 282, 438
TfiI GAWTC 3 cut(s) 7, 154, 551
Tru1I TTAA 2 cut(s) 396, 497
Tru9I TTAA 2 cut(s) 396, 497
TscAI CASTG 1 cut(s) 549
TseFI GTSAC 1 cut(s) 507
Tsp45I GTSAC 1 cut(s) 507
TspDTI ATGAA 3 cut(s) 146, 162, 569
TspGWI ACGGA 1 cut(s) 260
TspRI CASTG 1 cut(s) 549
XapI RAATTY 2 cut(s) 412, 499
XmnI GAANNNNTTC 1 cut(s) 153
ZrmI AGTACT 2 cut(s) 27, 117
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.