FvH4_6g17250

Pistil-specific extensin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0015362
Physical Location & Seq
Reverse (-)
11199652 .. 11200969
1318 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g17250.t1

Sequence Viewer

Length: 675 bp
ATGCCAGAATGCTATGCACGTCTCAAGGAGTGCTCTCCCACACTAGTCATTGTGTTTCCATATATTTGTTTCCTCTCGGCTCTTAGTGAATGTCAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCTATGGCGATTATGAAATATGCAGCAGTAGTGTTCATGACTGTATTGGTTTGCATCCATAATACAGTAGAAGCTTCGTTTAGTGAGGAACCGAAAGTCATACGTGTAGATGGAAAAGTATTGTGCCAGGACTGCACCGAAGGTTGGAATGAATGGGTTCATGGTGCCAGACCCATCATAGGTGGTAAGGTATCTGTTACTTGTCTGGATGAAAGAAAAAGAGTTGTGTACTATGGAAGCGATTTGACGGATGAGACGGGCCAGTTTGAATTGACCATAAACAAGTACACAATCCATGGTAAAGAACTTCAAGCTAAACGATGCTCGGTGAGGTTGGTTTCTTCCCCAGATGCTACTTGTAACGTCCTAACTGATTTTGCCGGTGGACGCTCCGGGGTTAAGCTCCAACGCCCGAGTTCGGTGTACCGGGATTTGGTCAAATACACTCTTGGTCCATTCTACTATACCACTCCAATGTGTGAAGAGCCTGATACTCATGACAAGTCGACTGATGATGATGGCAAGGGAGGCAACTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pollen_Ole_e_I

Protein Analysis

225

Amino Acids

25.41

Weight (kDa)

5.89

Isoelectric Point (pI)

42.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pollen_Ole_e_1 PF01190 81 - 177 1.5e-24 Pollen protein Ole e 1 like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015362)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G09925
fragaria_vesca FvH4_6g17250
malus_domestica MD12G1102700.v1.1 MD14G1096900.v1.1
prunus_persica Prupe.7G122800_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0471351
rosa_laevigata RLG00000024184
rosa_multiflora Rmu_sc0006582.1_g000024 Rmu_sc0010513.1_g000008
rosa_roxburghii Rroxscaffold_6G00410040
rosa_rugosa Rorug03G0117300
rosa_samantha Rh3AG166900 Rh3BG192300 Rh3CG182600 Rh3DG183500
rosa_wichuraiana Rw3G015700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 299
AccI GTMKAC 1 cut(s) 641
AfaI GTAC 3 cut(s) 365, 422, 560
AfiI CCNNNNNNNGG 4 cut(s) 279, 314, 553, 568
AflIII ACRYGT 1 cut(s) 238
AgsI TTSAA 2 cut(s) 404, 446
AhlI ACTAGT 1 cut(s) 43
AjiI CACGTC 1 cut(s) 20
AjnI CCWGG 1 cut(s) 261
AluBI AGCT 4 cut(s) 137, 209, 449, 538
AluI AGCT 4 cut(s) 137, 209, 449, 538
Alw21I GWGCWC 1 cut(s) 35
Alw26I GTCTC 2 cut(s) 26, 383
Ama87I CYCGRG 1 cut(s) 547
AoxI GGCC 1 cut(s) 394
ApeKI GCWGC 1 cut(s) 158
Asp700I GAANNNNTTC 1 cut(s) 291
AspS9I GGNCC 2 cut(s) 394, 587
AsuC2I CCSGG 2 cut(s) 529, 563
AsuHPI GGTGA 1 cut(s) 475
AvaI CYCGRG 1 cut(s) 547
AvaII GGWCC 1 cut(s) 587
BanI GGYRCC 1 cut(s) 299
Bbv12I GWGCWC 1 cut(s) 35
BbvI GCAGC 1 cut(s) 170
BccI CCATC 3 cut(s) 239, 317, 647
BciT130I CCWGG 1 cut(s) 263
BcnI CCSGG 2 cut(s) 529, 563
BcoDI GTCTC 2 cut(s) 26, 383
BcuI ACTAGT 1 cut(s) 43
BfaI CTAG 1 cut(s) 44
BisI GCNGC 1 cut(s) 159
BlsI GCNGC 1 cut(s) 160
Bme1390I CCNGG 3 cut(s) 263, 529, 563
Bme18I GGWCC 1 cut(s) 587
BmeT110I CYCGRG 1 cut(s) 547
BmgBI CACGTC 1 cut(s) 20
BmgT120I GGNCC 2 cut(s) 394, 587
BmiI GGNNCC 2 cut(s) 225, 301
BmrFI CCNGG 3 cut(s) 263, 529, 563
BmsI GCATC 3 cut(s) 198, 446, 475
BpuEI CTTGAG 1 cut(s) 8
BpuMI CCSGG 2 cut(s) 529, 563
BsaAI YACGTR 1 cut(s) 239
BsaJI CCNNGG 2 cut(s) 430, 528
Bsc4I CCNNNNNNNGG 4 cut(s) 279, 314, 553, 568
Bse118I RCCGGY 1 cut(s) 515
Bse1I ACTGG 1 cut(s) 397
BseBI CCWGG 1 cut(s) 263
BseDI CCNNGG 2 cut(s) 430, 528
BseGI GGATG 3 cut(s) 189, 349, 391
BseLI CCNNNNNNNGG 4 cut(s) 279, 314, 553, 568
BseNI ACTGG 1 cut(s) 397
BseXI GCAGC 1 cut(s) 170
BsgI GTGCAG 1 cut(s) 253
BshFI GGCC 1 cut(s) 396
BshNI GGYRCC 1 cut(s) 299
BsiHKAI GWGCWC 1 cut(s) 35
BsiHKCI CYCGRG 1 cut(s) 547
BsiSI CCGG 3 cut(s) 516, 528, 562
BslI CCNNNNNNNGG 4 cut(s) 279, 314, 553, 568
BsmAI GTCTC 2 cut(s) 26, 383
BsmBI CGTCTC 2 cut(s) 26, 383
BsmI GAATGC 1 cut(s) 14
BsnI GGCC 1 cut(s) 396
BsoBI CYCGRG 1 cut(s) 547
Bsp1286I GDGCHC 1 cut(s) 35
Bsp19I CCATGG 1 cut(s) 430
BspANI GGCC 1 cut(s) 396
BspHI TCATGA 2 cut(s) 171, 631
BspLI GGNNCC 2 cut(s) 225, 301
BspQI GCTCTTC 1 cut(s) 612
BspT107I GGYRCC 1 cut(s) 299
BsrFI RCCGGY 1 cut(s) 515
BsrI ACTGG 1 cut(s) 397
BssAI RCCGGY 1 cut(s) 515
BssECI CCNNGG 2 cut(s) 430, 528
BssT1I CCWWGG 1 cut(s) 430
Bst2UI CCWGG 1 cut(s) 263
Bst4CI ACNGT 2 cut(s) 178, 202
Bst6I CTCTTC 1 cut(s) 612
BstBAI YACGTR 1 cut(s) 239
BstDEI CTNAG 1 cut(s) 83
BstDSI CCRYGG 1 cut(s) 430
BstF5I GGATG 3 cut(s) 189, 349, 391
BstMAI GTCTC 2 cut(s) 26, 383
BstMWI GCNNNNNNNGC 2 cut(s) 267, 663
BstNI CCWGG 1 cut(s) 263
BstSCI CCNGG 3 cut(s) 261, 527, 561
BstV1I GCAGC 1 cut(s) 170
BsuRI GGCC 1 cut(s) 396
BtgI CCRYGG 1 cut(s) 430
BtrI CACGTC 1 cut(s) 20
BtsCI GGATG 3 cut(s) 189, 349, 391
CciI TCATGA 2 cut(s) 171, 631
Cfr10I RCCGGY 1 cut(s) 515
Cfr13I GGNCC 2 cut(s) 394, 587
CseI GACGC 1 cut(s) 531
Csp6I GTAC 3 cut(s) 364, 421, 559
CviAII CATG 4 cut(s) 172, 296, 431, 632
CviJI RGCY 7 cut(s) 80, 137, 209, 396, 449, 538, 622
CviKI_1 RGCY 7 cut(s) 80, 137, 209, 396, 449, 538, 622
CviQI GTAC 3 cut(s) 364, 421, 559
DdeI CTNAG 1 cut(s) 83
Eam1104I CTCTTC 1 cut(s) 612
EarI CTCTTC 1 cut(s) 612
Eco130I CCWWGG 1 cut(s) 430
Eco47I GGWCC 1 cut(s) 587
Eco88I CYCGRG 1 cut(s) 547
EcoRII CCWGG 1 cut(s) 261
EcoT14I CCWWGG 1 cut(s) 430
ErhI CCWWGG 1 cut(s) 430
Esp3I CGTCTC 2 cut(s) 26, 383
FaeI CATG 4 cut(s) 175, 299, 434, 635
FatI CATG 4 cut(s) 171, 295, 430, 631
FblI GTMKAC 1 cut(s) 641
Fnu4HI GCNGC 1 cut(s) 159
FokI GGATG 3 cut(s) 176, 356, 398
Fsp4HI GCNGC 1 cut(s) 159
FspBI CTAG 1 cut(s) 44
GluI GCNGC 1 cut(s) 159
HaeIII GGCC 1 cut(s) 396
HapII CCGG 3 cut(s) 516, 528, 562
HgaI GACGC 1 cut(s) 531
Hin1II CATG 4 cut(s) 175, 299, 434, 635
HincII GTYRAC 1 cut(s) 642
HindII GTYRAC 1 cut(s) 642
HindIII AAGCTT 1 cut(s) 207
HpaII CCGG 3 cut(s) 516, 528, 562
HphI GGTGA 1 cut(s) 475
Hpy166II GTNNAC 5 cut(s) 364, 423, 521, 559, 642
Hpy188I TCNGA 1 cut(s) 96
Hpy188III TCNNGA 3 cut(s) 172, 341, 632
Hpy8I GTNNAC 5 cut(s) 364, 423, 521, 559, 642
HpyAV CCTTC 1 cut(s) 269
HpyCH4III ACNGT 2 cut(s) 178, 202
HpyCH4IV ACGT 3 cut(s) 19, 238, 498
HpyCH4V TGCA 4 cut(s) 17, 158, 189, 270
HpyF10VI GCNNNNNNNGC 2 cut(s) 267, 663
HpyF3I CTNAG 1 cut(s) 83
HpySE526I ACGT 3 cut(s) 19, 238, 498
Hsp92II CATG 4 cut(s) 175, 299, 434, 635
LguI GCTCTTC 1 cut(s) 612
LmnI GCTCC 2 cut(s) 530, 543
Lsp1109I GCAGC 1 cut(s) 170
LweI GCATC 3 cut(s) 198, 446, 475
MaeI CTAG 1 cut(s) 44
MaeII ACGT 3 cut(s) 19, 238, 498
MaeIII GTNAC 2 cut(s) 331, 494
MboII GAAGA 2 cut(s) 468, 629
MhlI GDGCHC 1 cut(s) 35
MluCI AATT 1 cut(s) 404
MmeI TCCRAC 2 cut(s) 260, 565
MnlI CCTC 4 cut(s) 83, 214, 459, 656
MroXI GAANNNNTTC 1 cut(s) 291
MseI TTAA 1 cut(s) 534
MslI CAYNNNNRTG 1 cut(s) 608
MspI CCGG 3 cut(s) 516, 528, 562
MspR9I CCNGG 3 cut(s) 263, 529, 563
Mva1269I GAATGC 1 cut(s) 14
MvaI CCWGG 1 cut(s) 263
MwoI GCNNNNNNNGC 2 cut(s) 267, 663
NciI CCSGG 2 cut(s) 529, 563
NcoI CCATGG 1 cut(s) 430
NlaIII CATG 4 cut(s) 175, 299, 434, 635
NlaIV GGNNCC 2 cut(s) 225, 301
NmeAIII GCCGAG 1 cut(s) 56
PagI TCATGA 2 cut(s) 171, 631
PciSI GCTCTTC 1 cut(s) 612
PctI GAATGC 1 cut(s) 14
PdmI GAANNNNTTC 1 cut(s) 291
PkrI GCNGC 1 cut(s) 160
Ppu21I YACGTR 1 cut(s) 239
Psp6I CCWGG 1 cut(s) 261
PspGI CCWGG 1 cut(s) 261
PspN4I GGNNCC 2 cut(s) 225, 301
PspPI GGNCC 2 cut(s) 394, 587
RsaI GTAC 3 cut(s) 365, 422, 560
RsaNI GTAC 3 cut(s) 364, 421, 559
RseI CAYNNNNRTG 1 cut(s) 608
SalI GTCGAC 1 cut(s) 640
SapI GCTCTTC 1 cut(s) 612
SaqAI TTAA 1 cut(s) 534
SatI GCNGC 1 cut(s) 159
Sau96I GGNCC 2 cut(s) 394, 587
ScrFI CCNGG 3 cut(s) 263, 529, 563
SduI GDGCHC 1 cut(s) 35
SfaNI GCATC 3 cut(s) 198, 446, 475
SinI GGWCC 1 cut(s) 587
SmiMI CAYNNNNRTG 1 cut(s) 608
SmlI CTYRAG 1 cut(s) 23
SmoI CTYRAG 1 cut(s) 23
SpeI ACTAGT 1 cut(s) 43
Sse9I AATT 1 cut(s) 404
SspMI CTAG 1 cut(s) 44
StyD4I CCNGG 3 cut(s) 261, 527, 561
StyI CCWWGG 1 cut(s) 430
TaaI ACNGT 2 cut(s) 178, 202
TaiI ACGT 3 cut(s) 22, 241, 501
TaqI TCGA 1 cut(s) 641
TasI AATT 1 cut(s) 404
TatI WGTACW 2 cut(s) 363, 420
Tru1I TTAA 1 cut(s) 534
Tru9I TTAA 1 cut(s) 534
TseI GCWGC 1 cut(s) 158
TspDTI ATGAA 5 cut(s) 160, 164, 284, 300, 360
TspGWI ACGGA 1 cut(s) 398
VpaK11BI GGWCC 1 cut(s) 587
XmiI GTMKAC 1 cut(s) 641
XmnI GAANNNNTTC 1 cut(s) 291
XspI CTAG 1 cut(s) 44
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.