Prupe.7G122800_v2.0.a1

Pistil-specific extensin-like protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
Physical Location & Seq
Forward (+)
14547524 .. 14548367
844 bp
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UTR
Exon/CDS
Intron
Prupe.7G122800.1

Sequence Viewer

Length: 534 bp
ATGAGAGGTATGGCGATGCTGATATTTGCAGTATTATTGATTGTAATGGGTTGCACCCAAACAGCTGATGCTTCTAATTATGAGGAATCCAAAATCAAAACCATCCATGTAGGTGGGAAAGTACTATGCCAAGATTGCACCCAAGGTTGGAATGAATGGGTCCATGGTGCCAAACCCATCAAAGGTGGGAAGGTGTCTGTGACATGCATGGATGAGAGAAGCAGGGTTGTGTACTACGGAAGCGATCTGACTGACGAGAAGGGCCAATTCGACTTGATCATAAACAAGAACATCAACGGCAAAGAACTCAAAGCCAAGCTATGCTCAGTGAGGCTGGTGTCTTCCCCAGACGCCACGTGTAACATTCCGACCAATTTTGCTGGTGGACGAACTGGGGTGAAGCTCAATAGGCCCAGTTTGATGTATAGAGATTTGGTCAAATACACAATTGATCCATTCTATTATACCACTCCAACGTGCGAGAAACCAGATACTGATGATCACTCTGATAATGGCCATGGAGGCCACTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

178

Amino Acids

19.59

Weight (kDa)

7.58

Isoelectric Point (pI)

25.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0015362)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 167
AclWI GGATC 1 cut(s) 446
AcoI YGGCCR 1 cut(s) 514
AcvI CACGTG 1 cut(s) 357
AcyI GRCGYC 1 cut(s) 351
AfaI GTAC 2 cut(s) 123, 233
AfiI CCNNNNNNNGG 2 cut(s) 147, 182
AflIII ACRYGT 1 cut(s) 356
AluBI AGCT 3 cut(s) 65, 319, 403
AluI AGCT 3 cut(s) 65, 319, 403
AlwI GGATC 1 cut(s) 446
AlwNI CAGNNNCTG 1 cut(s) 494
AoxI GGCC 4 cut(s) 262, 410, 514, 523
AspS9I GGNCC 3 cut(s) 160, 262, 411
AsuHPI GGTGA 1 cut(s) 409
AvaII GGWCC 1 cut(s) 160
BalI TGGCCA 1 cut(s) 516
BanI GGYRCC 1 cut(s) 167
BbrPI CACGTG 1 cut(s) 357
BbsI GAAGAC 1 cut(s) 333
BccI CCATC 2 cut(s) 110, 185
BceAI ACGGC 1 cut(s) 313
BclI TGATCA 2 cut(s) 276, 499
BglI GCCNNNNNGGC 1 cut(s) 522
BmcAI AGTACT 1 cut(s) 123
Bme18I GGWCC 1 cut(s) 160
BmgT120I GGNCC 3 cut(s) 160, 262, 411
BmiI GGNNCC 2 cut(s) 161, 169
BmrI ACTGGG 2 cut(s) 402, 408
BmsI GCATC 2 cut(s) 6, 58
BmuI ACTGGG 2 cut(s) 402, 408
BpiI GAAGAC 1 cut(s) 333
BsaAI YACGTR 1 cut(s) 357
BsaHI GRCGYC 1 cut(s) 351
BsaJI CCNNGG 3 cut(s) 142, 163, 517
Bsc4I CCNNNNNNNGG 2 cut(s) 147, 182
Bse1I ACTGG 2 cut(s) 397, 414
BseDI CCNNGG 3 cut(s) 142, 163, 517
BseGI GGATG 2 cut(s) 102, 217
BseLI CCNNNNNNNGG 2 cut(s) 147, 182
BseMII CTCAG 1 cut(s) 339
BseNI ACTGG 2 cut(s) 397, 414
BshFI GGCC 4 cut(s) 264, 412, 516, 525
BshNI GGYRCC 1 cut(s) 167
BslI CCNNNNNNNGG 2 cut(s) 147, 182
BsnI GGCC 4 cut(s) 264, 412, 516, 525
Bsp143I GATC 4 cut(s) 244, 276, 451, 499
Bsp19I CCATGG 2 cut(s) 163, 517
BspANI GGCC 4 cut(s) 264, 412, 516, 525
BspCNI CTCAG 1 cut(s) 338
BspLI GGNNCC 2 cut(s) 161, 169
BspPI GGATC 1 cut(s) 446
BspT107I GGYRCC 1 cut(s) 167
BsrI ACTGG 2 cut(s) 397, 414
BssECI CCNNGG 3 cut(s) 142, 163, 517
BssMI GATC 4 cut(s) 244, 276, 451, 499
BssNI GRCGYC 1 cut(s) 351
BssT1I CCWWGG 3 cut(s) 142, 163, 517
BstACI GRCGYC 1 cut(s) 351
BstBAI YACGTR 1 cut(s) 357
BstDEI CTNAG 1 cut(s) 325
BstDSI CCRYGG 2 cut(s) 163, 517
BstF5I GGATG 2 cut(s) 102, 217
BstKTI GATC 4 cut(s) 247, 279, 454, 502
BstMBI GATC 4 cut(s) 244, 276, 451, 499
BstMWI GCNNNNNNNGC 3 cut(s) 135, 409, 522
BstNSI RCATGY 1 cut(s) 207
BstV2I GAAGAC 1 cut(s) 333
BstXI CCANNNNNNTGG 1 cut(s) 113
BsuRI GGCC 4 cut(s) 264, 412, 516, 525
BtgI CCRYGG 2 cut(s) 163, 517
BtgZI GCGATG 1 cut(s) 29
BtsCI GGATG 2 cut(s) 102, 217
BtsIMutI CAGTG 1 cut(s) 333
CaiI CAGNNNCTG 1 cut(s) 494
Cfr13I GGNCC 3 cut(s) 160, 262, 411
CseI GACGC 1 cut(s) 359
Csp6I GTAC 2 cut(s) 122, 232
CviAII CATG 5 cut(s) 107, 164, 204, 208, 518
CviJI RGCY 9 cut(s) 65, 264, 314, 319, 334, 403, 412, 516, 525
CviKI_1 RGCY 9 cut(s) 65, 264, 314, 319, 334, 403, 412, 516, 525
CviQI GTAC 2 cut(s) 122, 232
DdeI CTNAG 1 cut(s) 325
DpnI GATC 4 cut(s) 246, 278, 453, 501
DpnII GATC 4 cut(s) 244, 276, 451, 499
EaeI YGGCCR 1 cut(s) 514
Eco130I CCWWGG 3 cut(s) 142, 163, 517
Eco47I GGWCC 1 cut(s) 160
Eco72I CACGTG 1 cut(s) 357
EcoT14I CCWWGG 3 cut(s) 142, 163, 517
EcoT22I ATGCAT 1 cut(s) 209
ErhI CCWWGG 3 cut(s) 142, 163, 517
FaeI CATG 5 cut(s) 110, 167, 207, 211, 521
FatI CATG 5 cut(s) 106, 163, 203, 207, 517
FbaI TGATCA 2 cut(s) 276, 499
FokI GGATG 2 cut(s) 89, 224
HaeIII GGCC 4 cut(s) 264, 412, 516, 525
HgaI GACGC 1 cut(s) 359
Hin1I GRCGYC 1 cut(s) 351
Hin1II CATG 5 cut(s) 110, 167, 207, 211, 521
HinfI GANTC 1 cut(s) 86
HphI GGTGA 1 cut(s) 409
Hpy166II GTNNAC 2 cut(s) 232, 386
Hpy188I TCNGA 3 cut(s) 249, 369, 508
Hpy8I GTNNAC 2 cut(s) 232, 386
HpyAV CCTTC 2 cut(s) 184, 253
HpyCH4IV ACGT 2 cut(s) 356, 476
HpyCH4V TGCA 4 cut(s) 29, 54, 138, 207
HpyF10VI GCNNNNNNNGC 3 cut(s) 135, 409, 522
HpyF3I CTNAG 1 cut(s) 325
HpySE526I ACGT 2 cut(s) 356, 476
Hsp92I GRCGYC 1 cut(s) 351
Hsp92II CATG 5 cut(s) 110, 167, 207, 211, 521
Ksp22I TGATCA 2 cut(s) 276, 499
Kzo9I GATC 4 cut(s) 244, 276, 451, 499
LpnPI CCDG 7 cut(s) 208, 320, 360, 366, 378, 427, 501
LweI GCATC 2 cut(s) 6, 58
MaeII ACGT 2 cut(s) 356, 476
MaeIII GTNAC 2 cut(s) 199, 359
MalI GATC 4 cut(s) 246, 278, 453, 501
MboI GATC 4 cut(s) 244, 276, 451, 499
MboII GAAGA 1 cut(s) 333
MfeI CAATTG 1 cut(s) 447
MlsI TGGCCA 1 cut(s) 516
MluCI AATT 4 cut(s) 76, 266, 373, 447
MluNI TGGCCA 1 cut(s) 516
MmeI TCCRAC 3 cut(s) 128, 392, 497
MnlI CCTC 3 cut(s) 76, 324, 515
Mox20I TGGCCA 1 cut(s) 516
Mph1103I ATGCAT 1 cut(s) 209
MscI TGGCCA 1 cut(s) 516
MslI CAYNNNNRTG 1 cut(s) 111
Msp20I TGGCCA 1 cut(s) 516
MspA1I CMGCKG 1 cut(s) 65
MunI CAATTG 1 cut(s) 447
MwoI GCNNNNNNNGC 3 cut(s) 135, 409, 522
NcoI CCATGG 2 cut(s) 163, 517
NdeII GATC 4 cut(s) 244, 276, 451, 499
NlaIII CATG 5 cut(s) 110, 167, 207, 211, 521
NlaIV GGNNCC 2 cut(s) 161, 169
NmuCI GTSAC 1 cut(s) 199
NsiI ATGCAT 1 cut(s) 209
NspI RCATGY 1 cut(s) 207
PfeI GAWTC 1 cut(s) 86
PmaCI CACGTG 1 cut(s) 357
PmlI CACGTG 1 cut(s) 357
Ppu21I YACGTR 1 cut(s) 357
PspCI CACGTG 1 cut(s) 357
PspN4I GGNNCC 2 cut(s) 161, 169
PspPI GGNCC 3 cut(s) 160, 262, 411
PstNI CAGNNNCTG 1 cut(s) 494
PvuII CAGCTG 1 cut(s) 65
RsaI GTAC 2 cut(s) 123, 233
RsaNI GTAC 2 cut(s) 122, 232
RseI CAYNNNNRTG 1 cut(s) 111
Sau3AI GATC 4 cut(s) 244, 276, 451, 499
Sau96I GGNCC 3 cut(s) 160, 262, 411
ScaI AGTACT 1 cut(s) 123
SfaNI GCATC 2 cut(s) 6, 58
SfiI GGCCNNNNNGGCC 1 cut(s) 522
SinI GGWCC 1 cut(s) 160
SmiMI CAYNNNNRTG 1 cut(s) 111
Sse9I AATT 4 cut(s) 76, 266, 373, 447
StyI CCWWGG 3 cut(s) 142, 163, 517
TaiI ACGT 2 cut(s) 359, 479
TaqI TCGA 1 cut(s) 270
TasI AATT 4 cut(s) 76, 266, 373, 447
TatI WGTACW 2 cut(s) 121, 231
TfiI GAWTC 1 cut(s) 86
TscAI CASTG 1 cut(s) 333
TseFI GTSAC 1 cut(s) 199
Tsp45I GTSAC 1 cut(s) 199
TspDTI ATGAA 1 cut(s) 168
TspGWI ACGGA 1 cut(s) 252
TspRI CASTG 1 cut(s) 333
VpaK11BI GGWCC 1 cut(s) 160
XceI RCATGY 1 cut(s) 207
ZrmI AGTACT 1 cut(s) 123
Zsp2I ATGCAT 1 cut(s) 209
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.