Rmu_sc0006582.1_g000024

Pistil-specific extensin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006582.1
OG0015362
Physical Location & Seq
Forward (+)
126942 .. 128182
1241 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006582.1_g000024.1.cds

Sequence Viewer

Length: 522 bp
atggcgattctgaagtatgcagtagtactactgatgattgtattgggttgcatccataatacagtagaagcttcgtttagtgaggaaccaaaagtcatacgtgtagatgggaaagtactatgccaggactgcacccaaggttggaatgaatggattcatggtgccagacccatccaaggtggtaaagtatctgttacgtgtatggatgagagaagaagagttgtgtactatggaagcgatttgacggatgagatgggccagttcgacttgaccataaacaagtacactatccatggtaaagaactccaggctaatggatgctcggtgaggttggtgtcttccccagatgctacttgtaacgttctaactgattttgccggtgggcgttccggggttaagctccaacgcccgaatttggtgtaccgggatttggtcaagtacactcttggtccgttctactataccactccaatgtgtgaagaacctgatactcatgatgatggcaagggacacaactactaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pollen_Ole_e_I

Protein Analysis

173

Amino Acids

19.36

Weight (kDa)

5.93

Isoelectric Point (pI)

39.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015362)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G09925
fragaria_vesca FvH4_6g17250
malus_domestica MD12G1102700.v1.1 MD14G1096900.v1.1
prunus_persica Prupe.7G122800_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0471351
rosa_laevigata RLG00000024184
rosa_multiflora Rmu_sc0006582.1_g000024 Rmu_sc0010513.1_g000008
rosa_roxburghii Rroxscaffold_6G00410040
rosa_rugosa Rorug03G0117300
rosa_samantha Rh3AG166900 Rh3BG192300 Rh3CG182600 Rh3DG183500
rosa_wichuraiana Rw3G015700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 161
AclI AACGTT 1 cut(s) 360
AcsI RAATTY 1 cut(s) 412
AcuI CTGAAG 1 cut(s) 32
AfaI GTAC 6 cut(s) 27, 117, 227, 284, 422, 440
AfiI CCNNNNNNNGG 4 cut(s) 141, 176, 415, 430
AflIII ACRYGT 2 cut(s) 100, 197
AjnI CCWGG 2 cut(s) 123, 306
AluBI AGCT 2 cut(s) 71, 400
AluI AGCT 2 cut(s) 71, 400
AoxI GGCC 1 cut(s) 256
ApoI RAATTY 1 cut(s) 412
Asp700I GAANNNNTTC 1 cut(s) 153
AspS9I GGNCC 2 cut(s) 256, 449
AsuC2I CCSGG 2 cut(s) 391, 425
AsuHPI GGTGA 1 cut(s) 337
AvaII GGWCC 1 cut(s) 449
BanI GGYRCC 1 cut(s) 161
BbsI GAAGAC 1 cut(s) 330
BccI CCATC 4 cut(s) 101, 179, 247, 494
BciT130I CCWGG 2 cut(s) 125, 308
BcnI CCSGG 2 cut(s) 391, 425
BmcAI AGTACT 2 cut(s) 27, 117
Bme1390I CCNGG 4 cut(s) 125, 308, 391, 425
Bme18I GGWCC 1 cut(s) 449
BmgT120I GGNCC 2 cut(s) 256, 449
BmiI GGNNCC 2 cut(s) 87, 163
BmrFI CCNGG 4 cut(s) 125, 308, 391, 425
BmsI GCATC 3 cut(s) 60, 308, 337
BpiI GAAGAC 1 cut(s) 330
BpmI CTGGAG 1 cut(s) 290
BpuMI CCSGG 2 cut(s) 391, 425
BsaAI YACGTR 2 cut(s) 101, 198
BsaJI CCNNGG 4 cut(s) 136, 175, 292, 390
Bsc4I CCNNNNNNNGG 4 cut(s) 141, 176, 415, 430
Bse118I RCCGGY 1 cut(s) 377
Bse1I ACTGG 1 cut(s) 259
BseBI CCWGG 2 cut(s) 125, 308
BseDI CCNNGG 4 cut(s) 136, 175, 292, 390
BseGI GGATG 5 cut(s) 51, 171, 211, 253, 323
BseLI CCNNNNNNNGG 4 cut(s) 141, 176, 415, 430
BseNI ACTGG 1 cut(s) 259
BsgI GTGCAG 1 cut(s) 115
BshFI GGCC 1 cut(s) 258
BshNI GGYRCC 1 cut(s) 161
BsiSI CCGG 3 cut(s) 378, 390, 424
BslI CCNNNNNNNGG 4 cut(s) 141, 176, 415, 430
BsnI GGCC 1 cut(s) 258
Bsp19I CCATGG 1 cut(s) 292
BspANI GGCC 1 cut(s) 258
BspHI TCATGA 1 cut(s) 493
BspLI GGNNCC 2 cut(s) 87, 163
BspT107I GGYRCC 1 cut(s) 161
BsrFI RCCGGY 1 cut(s) 377
BsrI ACTGG 1 cut(s) 259
BssAI RCCGGY 1 cut(s) 377
BssECI CCNNGG 4 cut(s) 136, 175, 292, 390
BssT1I CCWWGG 3 cut(s) 136, 175, 292
Bst2UI CCWGG 2 cut(s) 125, 308
Bst4CI ACNGT 1 cut(s) 64
Bst6I CTCTTC 1 cut(s) 211
BstBAI YACGTR 2 cut(s) 101, 198
BstDSI CCRYGG 1 cut(s) 292
BstF5I GGATG 5 cut(s) 51, 171, 211, 253, 323
BstMWI GCNNNNNNNGC 1 cut(s) 129
BstNI CCWGG 2 cut(s) 125, 308
BstSCI CCNGG 4 cut(s) 123, 306, 389, 423
BstV2I GAAGAC 1 cut(s) 330
BstXI CCANNNNNNTGG 1 cut(s) 314
BsuRI GGCC 1 cut(s) 258
BtgI CCRYGG 1 cut(s) 292
BtsCI GGATG 5 cut(s) 51, 171, 211, 253, 323
CciI TCATGA 1 cut(s) 493
Cfr10I RCCGGY 1 cut(s) 377
Cfr13I GGNCC 2 cut(s) 256, 449
Csp6I GTAC 6 cut(s) 26, 116, 226, 283, 421, 439
CviAII CATG 3 cut(s) 158, 293, 494
CviJI RGCY 4 cut(s) 71, 258, 311, 400
CviKI_1 RGCY 4 cut(s) 71, 258, 311, 400
CviQI GTAC 6 cut(s) 26, 116, 226, 283, 421, 439
Eam1104I CTCTTC 1 cut(s) 211
EarI CTCTTC 1 cut(s) 211
Eco130I CCWWGG 3 cut(s) 136, 175, 292
Eco47I GGWCC 1 cut(s) 449
Eco57I CTGAAG 1 cut(s) 32
EcoRII CCWGG 2 cut(s) 123, 306
EcoT14I CCWWGG 3 cut(s) 136, 175, 292
ErhI CCWWGG 3 cut(s) 136, 175, 292
FaeI CATG 3 cut(s) 161, 296, 497
FatI CATG 3 cut(s) 157, 292, 493
FokI GGATG 5 cut(s) 38, 158, 218, 260, 330
GsuI CTGGAG 1 cut(s) 290
HaeIII GGCC 1 cut(s) 258
HapII CCGG 3 cut(s) 378, 390, 424
Hin1II CATG 3 cut(s) 161, 296, 497
HindIII AAGCTT 1 cut(s) 69
HinfI GANTC 2 cut(s) 7, 154
HpaII CCGG 3 cut(s) 378, 390, 424
HphI GGTGA 1 cut(s) 337
Hpy166II GTNNAC 4 cut(s) 226, 285, 421, 441
Hpy188I TCNGA 1 cut(s) 12
Hpy188III TCNNGA 1 cut(s) 494
Hpy8I GTNNAC 4 cut(s) 226, 285, 421, 441
HpyCH4III ACNGT 1 cut(s) 64
HpyCH4IV ACGT 3 cut(s) 100, 197, 360
HpyCH4V TGCA 3 cut(s) 20, 51, 132
HpyF10VI GCNNNNNNNGC 1 cut(s) 129
HpySE526I ACGT 3 cut(s) 100, 197, 360
Hsp92II CATG 3 cut(s) 161, 296, 497
LmnI GCTCC 1 cut(s) 405
LweI GCATC 3 cut(s) 60, 308, 337
MaeII ACGT 3 cut(s) 100, 197, 360
MaeIII GTNAC 2 cut(s) 193, 356
MboII GAAGA 4 cut(s) 225, 228, 330, 491
MluCI AATT 1 cut(s) 412
MmeI TCCRAC 2 cut(s) 122, 427
MnlI CCTC 2 cut(s) 76, 321
MroXI GAANNNNTTC 1 cut(s) 153
MseI TTAA 1 cut(s) 396
MslI CAYNNNNRTG 2 cut(s) 470, 498
MspI CCGG 3 cut(s) 378, 390, 424
MspR9I CCNGG 4 cut(s) 125, 308, 391, 425
MvaI CCWGG 2 cut(s) 125, 308
MwoI GCNNNNNNNGC 1 cut(s) 129
NciI CCSGG 2 cut(s) 391, 425
NcoI CCATGG 1 cut(s) 292
NlaIII CATG 3 cut(s) 161, 296, 497
NlaIV GGNNCC 2 cut(s) 87, 163
PagI TCATGA 1 cut(s) 493
PdmI GAANNNNTTC 1 cut(s) 153
PfeI GAWTC 2 cut(s) 7, 154
Ppu21I YACGTR 2 cut(s) 101, 198
Psp1406I AACGTT 1 cut(s) 360
Psp6I CCWGG 2 cut(s) 123, 306
PspGI CCWGG 2 cut(s) 123, 306
PspN4I GGNNCC 2 cut(s) 87, 163
PspPI GGNCC 2 cut(s) 256, 449
RsaI GTAC 6 cut(s) 27, 117, 227, 284, 422, 440
RsaNI GTAC 6 cut(s) 26, 116, 226, 283, 421, 439
RseI CAYNNNNRTG 2 cut(s) 470, 498
SaqAI TTAA 1 cut(s) 396
Sau96I GGNCC 2 cut(s) 256, 449
ScaI AGTACT 2 cut(s) 27, 117
ScrFI CCNGG 4 cut(s) 125, 308, 391, 425
SetI ASST 9 cut(s) 73, 103, 142, 181, 200, 332, 363, 402, 487
SfaNI GCATC 3 cut(s) 60, 308, 337
SinI GGWCC 1 cut(s) 449
SmiMI CAYNNNNRTG 2 cut(s) 470, 498
Sse9I AATT 1 cut(s) 412
StyD4I CCNGG 4 cut(s) 123, 306, 389, 423
StyI CCWWGG 3 cut(s) 136, 175, 292
TaaI ACNGT 1 cut(s) 64
TaiI ACGT 3 cut(s) 103, 200, 363
TaqI TCGA 1 cut(s) 264
TasI AATT 1 cut(s) 412
TatI WGTACW 5 cut(s) 25, 115, 225, 282, 438
TfiI GAWTC 2 cut(s) 7, 154
Tru1I TTAA 1 cut(s) 396
Tru9I TTAA 1 cut(s) 396
TspDTI ATGAA 2 cut(s) 146, 162
TspGWI ACGGA 2 cut(s) 260, 441
VpaK11BI GGWCC 1 cut(s) 449
XapI RAATTY 1 cut(s) 412
XmnI GAANNNNTTC 1 cut(s) 153
ZrmI AGTACT 2 cut(s) 27, 117
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.