AT3G10230

Lycopene cyclase protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0007985
Physical Location & Seq
Reverse (-)
3164075 .. 3166038
1964 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G10230.1

Sequence Viewer

Length: 1506 bp
ATGGATACTCTGTTGAAAACACCCAACAAGCTCGATTTTTTCATCCCTCAGTTTCATGGGTTTGAGAGATTATGCAGTAACAATCCATACCATTCAAGGGTTAGGCTTGGTGTGAAGAAAAGGGCTATCAAAATTGTCTCTAGTGTAGTGAGTGGTAGCGCTGCTCTTTTGGATCTTGTTCCTGAAACTAAGAAGGAGAATCTTGACTTTGAGCTTCCTTTGTACGACACTTCCAAGAGTCAAGTTGTTGATTTGGCTATTGTTGGTGGTGGTCCTGCTGGTTTAGCCGTGGCTCAGCAGGTTTCTGAAGCTGGACTCTCTGTTTGTTCCATTGATCCTTCTCCTAAGCTCATATGGCCTAACAATTATGGAGTTTGGGTTGATGAGTTTGAGGCTATGGATTTACTAGACTGCCTGGATACCACATGGTCTGGTGCTGTTGTCTATGTCGATGAAGGTGTCAAGAAGGATTTGAGCCGGCCTTATGGGAGAGTTAACCGGAAACAGCTCAAATCCAAAATGCTTCAGAAATGTATTACCAACGGTGTTAAATTTCATCAGTCTAAGGTCACTAATGTGGTTCACGAGGAGGCAAACTCCACTGTGGTCTGCAGTGACGGTGTAAAGATTCAGGCTTCCGTGGTTCTTGATGCCACTGGGTTTTCCCGATGCTTGGTTCAGTATGACAAACCTTACAACCCTGGGTACCAAGTAGCTTACGGGATTGTAGCTGAAGTTGATGGTCACCCATTCGATGTAGACAAAATGGTGTTCATGGATTGGAGAGACAAACATCTGGACTCATATCCTGAGCTGAAAGAACGGAACAGCAAGATCCCAACGTTCTTGTACGCTATGCCATTTTCTTCCAACCGAATATTTCTTGAAGAAACTTCTTTAGTTGCTAGACCTGGTCTGAGAATGGAAGATATCCAAGAAAGAATGGCTGCTAGACTGAAACATCTGGGGATCAATGTGAAGAGGATTGAGGAAGACGAGCGTTGTGTGATCCCGATGGGCGGTCCTTTACCAGTCTTACCTCAACGGGTTGTGGGGATTGGTGGGACAGCAGGAATGGTTCATCCTTCAACTGGTTACATGGTTGCTAGGACTCTTGCAGCTGCACCAATAGTTGCAAATGCCATTGTGAGATACCTCGGTTCACCAAGTAGTAATAGCCTGAGAGGAGATCAACTCTCTGCTGAGGTTTGGAGAGACTTGTGGCCTATCGAACGGCGTAGACAGAGGGAGTTCTTCTGTTTTGGAATGGATATTCTGCTGAAACTCGATTTAGACGCTACTAGAAGGTTCTTTGATGCATTCTTTGATCTGCAACCTCATTACTGGCACGGATTCTTGTCTTCCAGGCTGTTTCTCCCGGAACTGTTGGTCTTCGGGTTGTCGCTCTTCTCACACGCTTCCAATACCTCAAGATTGGAGATCATGACAAAGGGGACTGTTCCTCTTGCTAAGATGATCAACAATTTGGTACAAGATAGAGACTAA

Protein Analysis

501

Amino Acids

56.18

Weight (kDa)

7.61

Isoelectric Point (pI)

36.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lycopene_cycl PF05834 84 - 478 8.5e-154 Lycopene cyclase protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 289
Acc65I GGTACC 1 cut(s) 705
AccB1I GGYRCC 1 cut(s) 705
AccI GTMKAC 2 cut(s) 759, 1240
AciI CCGC 1 cut(s) 1020
AclI AACGTT 1 cut(s) 842
AclWI GGATC 5 cut(s) 180, 329, 829, 977, 1003
AcsI RAATTY 1 cut(s) 551
AcuI CTGAAG 3 cut(s) 327, 509, 753
AfaI GTAC 4 cut(s) 224, 707, 851, 1491
AfeI AGCGCT 1 cut(s) 160
AfiI CCNNNNNNNGG 4 cut(s) 97, 673, 1019, 1091
AgsI TTSAA 4 cut(s) 16, 96, 887, 1089
AjnI CCWGG 4 cut(s) 414, 700, 910, 1364
AleI CACNNNNGTG 1 cut(s) 575
AluBI AGCT 9 cut(s) 31, 214, 311, 349, 508, 716, 731, 814, 1121
AluI AGCT 9 cut(s) 31, 214, 311, 349, 508, 716, 731, 814, 1121
Alw26I GTCTC 4 cut(s) 142, 780, 1209, 1494
AlwI GGATC 5 cut(s) 180, 329, 829, 977, 1003
Aor51HI AGCGCT 1 cut(s) 160
AoxI GGCC 3 cut(s) 356, 479, 1223
ApeKI GCWGC 4 cut(s) 161, 947, 1118, 1121
ApoI RAATTY 1 cut(s) 551
ArsI GACNNNNNNTTYG 2 cut(s) 306, 338
Asp718I GGTACC 1 cut(s) 705
AspLEI GCGC 1 cut(s) 161
AspS9I GGNCC 2 cut(s) 272, 1022
AsuC2I CCSGG 1 cut(s) 1379
AsuHPI GGTGA 2 cut(s) 737, 1155
AvaII GGWCC 2 cut(s) 272, 1022
BaeI ACNNNNGTAYC 2 cut(s) 1144, 1177
BanI GGYRCC 1 cut(s) 705
BauI CACGAG 1 cut(s) 584
BbsI GAAGAC 3 cut(s) 999, 1353, 1384
BbvCI CCTCAGC 1 cut(s) 1203
BbvI GCAGC 4 cut(s) 148, 934, 1108, 1130
BccI CCATC 2 cut(s) 734, 1009
BceAI ACGGC 2 cut(s) 272, 1250
BciT130I CCWGG 4 cut(s) 416, 702, 912, 1366
BciVI GTATCC 1 cut(s) 412
BclI TGATCA 1 cut(s) 1476
BcnI CCSGG 1 cut(s) 1379
BcoDI GTCTC 4 cut(s) 142, 780, 1209, 1494
BfaI CTAG 6 cut(s) 141, 407, 906, 951, 1107, 1302
BfmI CTRYAG 1 cut(s) 610
BfoI RGCGCY 1 cut(s) 162
BfuAI ACCTGC 1 cut(s) 289
BfuI GTATCC 1 cut(s) 412
BisI GCNGC 4 cut(s) 162, 948, 1119, 1122
BlpI GCTNAGC 1 cut(s) 294
BlsI GCNGC 4 cut(s) 163, 949, 1120, 1123
Bme1390I CCNGG 5 cut(s) 416, 702, 912, 1366, 1379
Bme18I GGWCC 2 cut(s) 272, 1022
BmgT120I GGNCC 2 cut(s) 272, 1022
BmiI GGNNCC 1 cut(s) 707
BmrFI CCNGG 5 cut(s) 416, 702, 912, 1366, 1379
BmrI ACTGGG 1 cut(s) 666
BmsI GCATC 3 cut(s) 640, 659, 1306
BmuI ACTGGG 1 cut(s) 666
BpiI GAAGAC 3 cut(s) 999, 1353, 1384
BplI GAGNNNNNCTC 4 cut(s) 581, 613, 1179, 1211
Bpu10I CCTNAGC 3 cut(s) 345, 810, 1203
Bpu1102I GCTNAGC 1 cut(s) 294
BpuEI CTTGAG 1 cut(s) 1414
BpuMI CCSGG 1 cut(s) 1379
BsaJI CCNNGG 5 cut(s) 288, 639, 700, 701, 1156
BsaWI WCCGGW 1 cut(s) 498
BsaXI ACNNNNNCTCC 2 cut(s) 363, 393
Bsc4I CCNNNNNNNGG 4 cut(s) 97, 673, 1019, 1091
Bse118I RCCGGY 1 cut(s) 477
Bse1I ACTGG 4 cut(s) 661, 1031, 1096, 1349
BseBI CCWGG 4 cut(s) 416, 702, 912, 1366
BseDI CCNNGG 5 cut(s) 288, 639, 700, 701, 1156
BseGI GGATG 2 cut(s) 42, 1081
BseLI CCNNNNNNNGG 4 cut(s) 97, 673, 1019, 1091
BseMII CTCAG 6 cut(s) 62, 308, 801, 908, 1172, 1194
BseNI ACTGG 4 cut(s) 661, 1031, 1096, 1349
BseRI GAGGAG 2 cut(s) 602, 1200
BseXI GCAGC 4 cut(s) 148, 934, 1108, 1130
BsgI GTGCAG 1 cut(s) 1107
BshFI GGCC 3 cut(s) 358, 481, 1225
BshNI GGYRCC 1 cut(s) 705
BsiSI CCGG 3 cut(s) 478, 499, 1379
BslFI GGGAC 2 cut(s) 1078, 1468
BslI CCNNNNNNNGG 4 cut(s) 97, 673, 1019, 1091
BsmAI GTCTC 4 cut(s) 142, 780, 1209, 1494
BsmFI GGGAC 2 cut(s) 1078, 1468
BsmI GAATGC 1 cut(s) 1319
BsnI GGCC 3 cut(s) 358, 481, 1225
Bsp143I GATC 9 cut(s) 172, 334, 834, 969, 1008, 1189, 1327, 1440, 1476
Bsp1720I GCTNAGC 1 cut(s) 294
BspACI CCGC 1 cut(s) 1020
BspANI GGCC 3 cut(s) 358, 481, 1225
BspCNI CTCAG 6 cut(s) 61, 307, 802, 909, 1173, 1195
BspHI TCATGA 1 cut(s) 1443
BspLI GGNNCC 1 cut(s) 707
BspMAI CTGCAG 1 cut(s) 614
BspMI ACCTGC 1 cut(s) 289
BspPI GGATC 5 cut(s) 180, 329, 829, 977, 1003
BspQI GCTCTTC 1 cut(s) 1412
BspT107I GGYRCC 1 cut(s) 705
BsrFI RCCGGY 1 cut(s) 477
BsrI ACTGG 4 cut(s) 661, 1031, 1096, 1349
BssAI RCCGGY 1 cut(s) 477
BssECI CCNNGG 5 cut(s) 288, 639, 700, 701, 1156
BssMI GATC 9 cut(s) 172, 334, 834, 969, 1008, 1189, 1327, 1440, 1476
BssSI CACGAG 1 cut(s) 584
Bst2BI CACGAG 1 cut(s) 584
Bst2UI CCWGG 4 cut(s) 416, 702, 912, 1366
Bst4CI ACNGT 5 cut(s) 545, 604, 620, 1386, 1459
Bst6I CTCTTC 2 cut(s) 974, 1412
BstC8I GCNNGC 1 cut(s) 479
BstDSI CCRYGG 2 cut(s) 288, 639
BstEII GGTNACC 1 cut(s) 743
BstF5I GGATG 2 cut(s) 42, 1081
BstH2I RGCGCY 1 cut(s) 162
BstHHI GCGC 1 cut(s) 161
BstKTI GATC 9 cut(s) 175, 337, 837, 972, 1011, 1192, 1330, 1443, 1479
BstMAI GTCTC 4 cut(s) 142, 780, 1209, 1494
BstMBI GATC 9 cut(s) 172, 334, 834, 969, 1008, 1189, 1327, 1440, 1476
BstMWI GCNNNNNNNGC 2 cut(s) 284, 355
BstNI CCWGG 4 cut(s) 416, 702, 912, 1366
BstPI GGTNACC 1 cut(s) 743
BstSCI CCNGG 5 cut(s) 414, 700, 910, 1364, 1377
BstSFI CTRYAG 1 cut(s) 610
BstV1I GCAGC 4 cut(s) 148, 934, 1108, 1130
BstV2I GAAGAC 3 cut(s) 999, 1353, 1384
BstX2I RGATCY 2 cut(s) 172, 834
BstYI RGATCY 2 cut(s) 172, 834
BsuI GTATCC 1 cut(s) 412
BsuRI GGCC 3 cut(s) 358, 481, 1225
BtgI CCRYGG 2 cut(s) 288, 639
BtsCI GGATG 2 cut(s) 42, 1081
BtsI GCAGTG 1 cut(s) 619
BtsIMutI CAGTG 3 cut(s) 600, 619, 654
BveI ACCTGC 1 cut(s) 289
Cac8I GCNNGC 1 cut(s) 479
CciI TCATGA 1 cut(s) 1443
CfoI GCGC 1 cut(s) 161
Cfr10I RCCGGY 1 cut(s) 477
Cfr13I GGNCC 2 cut(s) 272, 1022
CseI GACGC 1 cut(s) 1304
CsiI ACCWGGT 1 cut(s) 910
Csp6I GTAC 4 cut(s) 223, 706, 850, 1490
CviAII CATG 5 cut(s) 56, 426, 775, 1099, 1444
CviQI GTAC 4 cut(s) 223, 706, 850, 1490
DpnI GATC 9 cut(s) 174, 336, 836, 971, 1010, 1191, 1329, 1442, 1478
DpnII GATC 9 cut(s) 172, 334, 834, 969, 1008, 1189, 1327, 1440, 1476
Eam1104I CTCTTC 2 cut(s) 974, 1412
EarI CTCTTC 2 cut(s) 974, 1412
Eco32I GATATC 1 cut(s) 931
Eco47I GGWCC 2 cut(s) 272, 1022
Eco47III AGCGCT 1 cut(s) 160
Eco57I CTGAAG 3 cut(s) 327, 509, 753
Eco91I GGTNACC 1 cut(s) 743
EcoO65I GGTNACC 1 cut(s) 743
EcoRII CCWGG 4 cut(s) 414, 700, 910, 1364
EcoRV GATATC 1 cut(s) 931
EcoT22I ATGCAT 1 cut(s) 1321
FaeI CATG 5 cut(s) 59, 429, 778, 1102, 1447
FaqI GGGAC 2 cut(s) 1078, 1468
FatI CATG 5 cut(s) 55, 425, 774, 1098, 1443
FauNDI CATATG 1 cut(s) 353
FbaI TGATCA 1 cut(s) 1476
FblI GTMKAC 2 cut(s) 759, 1240
Fnu4HI GCNGC 4 cut(s) 162, 948, 1119, 1122
FokI GGATG 2 cut(s) 29, 1068
Fsp4HI GCNGC 4 cut(s) 162, 948, 1119, 1122
FspBI CTAG 6 cut(s) 141, 407, 906, 951, 1107, 1302
GlaI GCGC 1 cut(s) 160
GluI GCNGC 4 cut(s) 162, 948, 1119, 1122
HaeII RGCGCY 1 cut(s) 162
HaeIII GGCC 3 cut(s) 358, 481, 1225
HapII CCGG 3 cut(s) 478, 499, 1379
HgaI GACGC 1 cut(s) 1304
HhaI GCGC 1 cut(s) 161
Hin1II CATG 5 cut(s) 59, 429, 778, 1102, 1447
Hin6I GCGC 1 cut(s) 159
HinP1I GCGC 1 cut(s) 159
HincII GTYRAC 1 cut(s) 496
HindII GTYRAC 1 cut(s) 496
HinfI GANTC 7 cut(s) 199, 238, 315, 628, 800, 1111, 1353
HpaI GTTAAC 1 cut(s) 496
HpaII CCGG 3 cut(s) 478, 499, 1379
HphI GGTGA 2 cut(s) 737, 1155
Hpy166II GTNNAC 5 cut(s) 496, 583, 760, 1163, 1241
Hpy188I TCNGA 3 cut(s) 307, 528, 918
Hpy8I GTNNAC 5 cut(s) 496, 583, 760, 1163, 1241
HpyAV CCTTC 6 cut(s) 187, 348, 449, 460, 1095, 1299
HpyCH4III ACNGT 5 cut(s) 545, 604, 620, 1386, 1459
HpyCH4IV ACGT 1 cut(s) 842
HpyCH4V TGCA 7 cut(s) 75, 612, 1118, 1124, 1136, 1319, 1333
HpyF10VI GCNNNNNNNGC 2 cut(s) 284, 355
HpySE526I ACGT 1 cut(s) 842
Hsp92II CATG 5 cut(s) 59, 429, 778, 1102, 1447
HspAI GCGC 1 cut(s) 159
KpnI GGTACC 1 cut(s) 709
KroI GCCGGC 1 cut(s) 477
KroNI GCCGGC 1 cut(s) 479
Ksp22I TGATCA 1 cut(s) 1476
KspAI GTTAAC 1 cut(s) 496
Kzo9I GATC 9 cut(s) 172, 334, 834, 969, 1008, 1189, 1327, 1440, 1476
LguI GCTCTTC 1 cut(s) 1412
Lsp1109I GCAGC 4 cut(s) 148, 934, 1108, 1130
LweI GCATC 3 cut(s) 640, 659, 1306
MabI ACCWGGT 1 cut(s) 910
MaeI CTAG 6 cut(s) 141, 407, 906, 951, 1107, 1302
MaeII ACGT 1 cut(s) 842
MaeIII GTNAC 5 cut(s) 77, 568, 614, 743, 1094
MalI GATC 9 cut(s) 174, 336, 836, 971, 1010, 1191, 1329, 1442, 1478
MboI GATC 9 cut(s) 172, 334, 834, 969, 1008, 1189, 1327, 1440, 1476
MflI RGATCY 2 cut(s) 172, 834
MluCI AATT 4 cut(s) 132, 364, 551, 1483
MlyI GAGTC 4 cut(s) 247, 309, 794, 1105
MmeI TCCRAC 1 cut(s) 894
Mph1103I ATGCAT 1 cut(s) 1321
MroNI GCCGGC 1 cut(s) 477
MseI TTAA 2 cut(s) 495, 549
MslI CAYNNNNRTG 1 cut(s) 575
MspA1I CMGCKG 1 cut(s) 1121
MspI CCGG 3 cut(s) 478, 499, 1379
MspR9I CCNGG 5 cut(s) 416, 702, 912, 1366, 1379
Mva1269I GAATGC 1 cut(s) 1319
MvaI CCWGG 4 cut(s) 416, 702, 912, 1366
MwoI GCNNNNNNNGC 2 cut(s) 284, 355
NaeI GCCGGC 1 cut(s) 479
NciI CCSGG 1 cut(s) 1379
NdeI CATATG 1 cut(s) 353
NdeII GATC 9 cut(s) 172, 334, 834, 969, 1008, 1189, 1327, 1440, 1476
NgoMIV GCCGGC 1 cut(s) 477
NlaIII CATG 5 cut(s) 59, 429, 778, 1102, 1447
NlaIV GGNNCC 1 cut(s) 707
NmuCI GTSAC 3 cut(s) 568, 614, 743
NsiI ATGCAT 1 cut(s) 1321
OliI CACNNNNGTG 1 cut(s) 575
PagI TCATGA 1 cut(s) 1443
PasI CCCWGGG 1 cut(s) 701
PciSI GCTCTTC 1 cut(s) 1412
PctI GAATGC 1 cut(s) 1319
PdiI GCCGGC 1 cut(s) 479
PfeI GAWTC 3 cut(s) 199, 628, 1353
PflFI GACNNNGTC 1 cut(s) 912
PfoI TCCNGGA 1 cut(s) 1377
PkrI GCNGC 4 cut(s) 163, 949, 1120, 1123
PleI GAGTC 4 cut(s) 246, 309, 794, 1105
PpsI GAGTC 4 cut(s) 246, 309, 794, 1105
Psp1406I AACGTT 1 cut(s) 842
Psp6I CCWGG 4 cut(s) 414, 700, 910, 1364
PspEI GGTNACC 1 cut(s) 743
PspGI CCWGG 4 cut(s) 414, 700, 910, 1364
PspN4I GGNNCC 1 cut(s) 707
PspPI GGNCC 2 cut(s) 272, 1022
PstI CTGCAG 1 cut(s) 614
PsuI RGATCY 2 cut(s) 172, 834
PsyI GACNNNGTC 1 cut(s) 912
PvuII CAGCTG 1 cut(s) 1121
RsaI GTAC 4 cut(s) 224, 707, 851, 1491
RsaNI GTAC 4 cut(s) 223, 706, 850, 1490
RseI CAYNNNNRTG 1 cut(s) 575
SapI GCTCTTC 1 cut(s) 1412
SaqAI TTAA 2 cut(s) 495, 549
SatI GCNGC 4 cut(s) 162, 948, 1119, 1122
Sau3AI GATC 9 cut(s) 172, 334, 834, 969, 1008, 1189, 1327, 1440, 1476
Sau96I GGNCC 2 cut(s) 272, 1022
SchI GAGTC 4 cut(s) 247, 309, 794, 1105
ScrFI CCNGG 5 cut(s) 416, 702, 912, 1366, 1379
SexAI ACCWGGT 1 cut(s) 910
SfaNI GCATC 3 cut(s) 640, 659, 1306
SfcI CTRYAG 1 cut(s) 610
SinI GGWCC 2 cut(s) 272, 1022
SmiMI CAYNNNNRTG 1 cut(s) 575
SmlI CTYRAG 1 cut(s) 1429
SmoI CTYRAG 1 cut(s) 1429
Sse9I AATT 4 cut(s) 132, 364, 551, 1483
SsiI CCGC 1 cut(s) 1020
SspI AATATT 1 cut(s) 879
SspMI CTAG 6 cut(s) 141, 407, 906, 951, 1107, 1302
StyD4I CCNGG 5 cut(s) 414, 700, 910, 1364, 1377
TaaI ACNGT 5 cut(s) 545, 604, 620, 1386, 1459
TaiI ACGT 1 cut(s) 845
TaqI TCGA 5 cut(s) 33, 450, 753, 1230, 1287
TasI AATT 4 cut(s) 132, 364, 551, 1483
TfiI GAWTC 3 cut(s) 199, 628, 1353
Tru1I TTAA 2 cut(s) 495, 549
Tru9I TTAA 2 cut(s) 495, 549
TscAI CASTG 3 cut(s) 607, 619, 661
TseFI GTSAC 3 cut(s) 568, 614, 743
TseI GCWGC 4 cut(s) 161, 947, 1118, 1121
Tsp45I GTSAC 3 cut(s) 568, 614, 743
TspDTI ATGAA 6 cut(s) 31, 44, 468, 545, 763, 1070
TspGWI ACGGA 3 cut(s) 628, 838, 1365
TspRI CASTG 3 cut(s) 607, 619, 661
Tth111I GACNNNGTC 1 cut(s) 912
VpaK11BI GGWCC 2 cut(s) 272, 1022
XapI RAATTY 1 cut(s) 551
XmiI GTMKAC 2 cut(s) 759, 1240
XspI CTAG 6 cut(s) 141, 407, 906, 951, 1107, 1302
Zsp2I ATGCAT 1 cut(s) 1321
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.