Rmu_sc0000796.1_g000027

Lycopene beta cyclase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000796.1
Physical Location & Seq
Reverse (-)
122723 .. 124216
1494 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000796.1_g000027.1.cds

Sequence Viewer

Length: 1494 bp
atggatacattactcaaaacacataacaagctcgagtttcttcacccacttcatgggttttcagagaaagtgagtaattggaactcttcgaggcaggagcttcgatgtggtctcaggaagtcctatagaactggtcgtgttaaggctagtagtagtgctcttctggagcttgtgcctgaaaccaagaaggagaatctcgactttgagcttcccttgtatgaccaatcaaagggtcttgtggtggaccttgcagtcgtgggaggcggccctgcagggcttgcggtggcacagcaagtctccgaggcagggctatctgtttgctcgattgatccctctcccaagttaatctggcccaacaattatggtgtttgggtggatgagtttgaggccatggatttgcttgattgcctcgacactacctggtctggtgctgttgtgttcatagatgaacaatcaaagaaggatcttgataggccatatgggagggttaataggaagcagctcaagtccaaaatgctgcagaaatgcatttcaaatggtgtcaagtttcatcaagttaaagtcagtaatgttattcacgaggaggaaaaatcaatcttgatttacaacgatggcgtcacaattcaagcttctgtggttcttgatgcaacaggtttttcaagatgccttgtacagtatgataagccttacaatccaggttaccaagtggcgtatgggattttggctgaggtcgaagaacatccatttgatgtggataagatggttttcatggattggagagattcacatttgaagaatagttctgaactgaaagagagaaatagtaagatccctacttttctatatgcaatgcctttttcatgcaacaggatatttcttgaagaaacctctctagttgctcggcctggactacccatgaaagatatccaggaaaggatggttgctagattgaggcacctaggcataaaagttaagagcattgaagaggatgagcattgtgtcattccgatgggcaggccccttctggtgctccctcaaagagttgttggaattggcggtacagctgggatggtgcacccttcaacaggatatatggttgcgaggactctggcagcagctcctattgttgcaaatgccatagttcagtaccttggttctgatagaagtctttcaggaaatgaactgtcagcagaagtttggaaagatttatggcccatacaaaggaggagacaaagggagttcttctgtttcggcatgtccattctgctcaagctggatttgaatgccacaagaaggtttttcaatgcattttttgatctagaacctcgttattggcatggattcttgtcatctcgactgtttcttcccgatcttgtatttttcgggctttcactgttttctcatgcttcaaatgctagtagattagaaataatgggaaagggaactattcctttggtaaagatgatcaacaacttgatacaggatagagattag

Protein Analysis

497

Amino Acids

56.16

Weight (kDa)

8.02

Isoelectric Point (pI)

38.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 251
AccB1I GGYRCC 1 cut(s) 954
AccB7I CCANNNNNTGG 1 cut(s) 53
AciI CCGC 3 cut(s) 264, 281, 1056
AclWI GGATC 3 cut(s) 323, 471, 823
AcyI GRCGYC 1 cut(s) 615
AfaI GTAC 3 cut(s) 672, 1060, 1148
AfiI CCNNNNNNNGG 6 cut(s) 53, 229, 306, 1085, 1221, 1293
AjnI CCWGG 4 cut(s) 419, 694, 904, 927
AluBI AGCT 9 cut(s) 31, 100, 169, 208, 502, 629, 1064, 1118, 1273
AluI AGCT 9 cut(s) 31, 100, 169, 208, 502, 629, 1064, 1118, 1273
Alw21I GWGCWC 3 cut(s) 160, 1032, 1077
Alw26I GTCTC 3 cut(s) 116, 301, 1222
Alw44I GTGCAC 1 cut(s) 1073
AlwI GGATC 3 cut(s) 323, 471, 823
Ama87I CYCGRG 1 cut(s) 32
AoxI GGCC 7 cut(s) 265, 350, 387, 473, 902, 1016, 1211
ApaLI GTGCAC 1 cut(s) 1073
ApeKI GCWGC 4 cut(s) 499, 517, 1112, 1115
Asp700I GAANNNNTTC 1 cut(s) 1168
AspA2I CCTAGG 1 cut(s) 958
AspS9I GGNCC 5 cut(s) 244, 266, 351, 1017, 1212
AsuHPI GGTGA 1 cut(s) 35
AvaI CYCGRG 1 cut(s) 32
AvaII GGWCC 1 cut(s) 244
AvrII CCTAGG 1 cut(s) 958
BaeGI GKGCMC 1 cut(s) 1077
BanI GGYRCC 1 cut(s) 954
BauI CACGAG 1 cut(s) 578
Bbv12I GWGCWC 3 cut(s) 160, 1032, 1077
BbvCI CCTCAGC 1 cut(s) 726
BbvI GCAGC 4 cut(s) 504, 511, 1124, 1127
BccI CCATC 5 cut(s) 605, 754, 931, 1003, 1063
BcgI CGANNNNNNTGC 2 cut(s) 83, 117
BciT130I CCWGG 4 cut(s) 421, 696, 906, 929
BclI TGATCA 1 cut(s) 1464
BcoDI GTCTC 3 cut(s) 116, 301, 1222
BfaI CTAG 6 cut(s) 147, 893, 945, 959, 1319, 1416
BfmI CTRYAG 3 cut(s) 124, 270, 518
BisI GCNGC 5 cut(s) 265, 500, 518, 1113, 1116
BlnI CCTAGG 1 cut(s) 958
BlsI GCNGC 5 cut(s) 266, 501, 519, 1114, 1117
Bme1390I CCNGG 4 cut(s) 421, 696, 906, 929
Bme18I GGWCC 1 cut(s) 244
BmeT110I CYCGRG 1 cut(s) 32
BmgT120I GGNCC 5 cut(s) 244, 266, 351, 1017, 1212
BmiI GGNNCC 2 cut(s) 956, 1019
BmrFI CCNGG 4 cut(s) 421, 696, 906, 929
BmsI GCATC 2 cut(s) 634, 653
BpmI CTGGAG 1 cut(s) 185
Bpu10I CCTNAGC 1 cut(s) 726
BpuEI CTTGAG 2 cut(s) 488, 1253
BsaHI GRCGYC 1 cut(s) 615
BsaI GGTCTC 1 cut(s) 116
BsaJI CCNNGG 4 cut(s) 300, 390, 958, 1150
Bsc4I CCNNNNNNNGG 6 cut(s) 53, 229, 306, 1085, 1221, 1293
Bse1I ACTGG 1 cut(s) 136
Bse3DI GCAATG 1 cut(s) 855
BseBI CCWGG 4 cut(s) 421, 696, 906, 929
BseDI CCNNGG 4 cut(s) 300, 390, 958, 1150
BseGI GGATG 5 cut(s) 382, 739, 942, 994, 1074
BseLI CCNNNNNNNGG 6 cut(s) 53, 229, 306, 1085, 1221, 1293
BseMI GCAATG 1 cut(s) 855
BseMII CTCAG 2 cut(s) 127, 717
BseNI ACTGG 1 cut(s) 136
BseRI GAGGAG 2 cut(s) 596, 1240
BseSI GKGCMC 1 cut(s) 1077
BseXI GCAGC 4 cut(s) 504, 511, 1124, 1127
BseYI CCCAGC 1 cut(s) 1064
BshFI GGCC 7 cut(s) 267, 352, 389, 475, 904, 1018, 1213
BshNI GGYRCC 1 cut(s) 954
BsiHKAI GWGCWC 3 cut(s) 160, 1032, 1077
BsiHKCI CYCGRG 1 cut(s) 32
BslI CCNNNNNNNGG 6 cut(s) 53, 229, 306, 1085, 1221, 1293
BsmAI GTCTC 3 cut(s) 116, 301, 1222
BsmI GAATGC 1 cut(s) 1288
BsnI GGCC 7 cut(s) 267, 352, 389, 475, 904, 1018, 1213
Bso31I GGTCTC 1 cut(s) 116
BsoBI CYCGRG 1 cut(s) 32
Bsp1286I GDGCHC 3 cut(s) 160, 1032, 1077
Bsp1407I TGTACA 1 cut(s) 670
Bsp143I GATC 6 cut(s) 328, 463, 828, 1315, 1369, 1464
Bsp19I CCATGG 1 cut(s) 390
BspACI CCGC 3 cut(s) 264, 281, 1056
BspANI GGCC 7 cut(s) 267, 352, 389, 475, 904, 1018, 1213
BspCNI CTCAG 2 cut(s) 126, 718
BspLI GGNNCC 2 cut(s) 956, 1019
BspMAI CTGCAG 2 cut(s) 274, 522
BspPI GGATC 3 cut(s) 323, 471, 823
BspQI GCTCTTC 1 cut(s) 165
BspT107I GGYRCC 1 cut(s) 954
BspTNI GGTCTC 1 cut(s) 116
BsrDI GCAATG 1 cut(s) 855
BsrGI TGTACA 1 cut(s) 670
BsrI ACTGG 1 cut(s) 136
BssECI CCNNGG 4 cut(s) 300, 390, 958, 1150
BssMI GATC 6 cut(s) 328, 463, 828, 1315, 1369, 1464
BssNI GRCGYC 1 cut(s) 615
BssSI CACGAG 1 cut(s) 578
BssT1I CCWWGG 3 cut(s) 390, 958, 1150
Bst2BI CACGAG 1 cut(s) 578
Bst2UI CCWGG 4 cut(s) 421, 696, 906, 929
Bst4CI ACNGT 4 cut(s) 675, 1185, 1359, 1395
Bst6I CTCTTC 3 cut(s) 91, 165, 978
BstACI GRCGYC 1 cut(s) 615
BstAPI GCANNNNNTGC 1 cut(s) 278
BstAUI TGTACA 1 cut(s) 670
BstC8I GCNNGC 2 cut(s) 279, 1016
BstDEI CTNAG 2 cut(s) 113, 726
BstDSI CCRYGG 1 cut(s) 390
BstEII GGTNACC 1 cut(s) 698
BstENI CCTNNNNNAGG 1 cut(s) 1083
BstF5I GGATG 5 cut(s) 382, 739, 942, 994, 1074
BstKTI GATC 6 cut(s) 331, 466, 831, 1318, 1372, 1467
BstMAI GTCTC 3 cut(s) 116, 301, 1222
BstMBI GATC 6 cut(s) 328, 463, 828, 1315, 1369, 1464
BstMWI GCNNNNNNNGC 2 cut(s) 278, 1412
BstNI CCWGG 4 cut(s) 421, 696, 906, 929
BstNSI RCATGY 1 cut(s) 1258
BstPI GGTNACC 1 cut(s) 698
BstSCI CCNGG 4 cut(s) 419, 694, 904, 927
BstSFI CTRYAG 3 cut(s) 124, 270, 518
BstSLI GKGCMC 1 cut(s) 1077
BstV1I GCAGC 4 cut(s) 504, 511, 1124, 1127
BstX2I RGATCY 2 cut(s) 463, 828
BstYI RGATCY 2 cut(s) 463, 828
BsuRI GGCC 7 cut(s) 267, 352, 389, 475, 904, 1018, 1213
BtgI CCRYGG 1 cut(s) 390
BtsCI GGATG 5 cut(s) 382, 739, 942, 994, 1074
BtsIMutI CAGTG 1 cut(s) 1391
Cac8I GCNNGC 2 cut(s) 279, 1016
Cfr13I GGNCC 5 cut(s) 244, 266, 351, 1017, 1212
CseI GACGC 1 cut(s) 604
CsiI ACCWGGT 1 cut(s) 419
Csp6I GTAC 3 cut(s) 671, 1059, 1147
CviAII CATG 8 cut(s) 53, 391, 769, 861, 916, 1255, 1337, 1403
CviQI GTAC 3 cut(s) 671, 1059, 1147
DdeI CTNAG 2 cut(s) 113, 726
DpnI GATC 6 cut(s) 330, 465, 830, 1317, 1371, 1466
DpnII GATC 6 cut(s) 328, 463, 828, 1315, 1369, 1464
DrdI GACNNNNNNGTC 1 cut(s) 251
DseDI GACNNNNNNGTC 1 cut(s) 251
Eam1104I CTCTTC 3 cut(s) 91, 165, 978
EarI CTCTTC 3 cut(s) 91, 165, 978
Eco130I CCWWGG 3 cut(s) 390, 958, 1150
Eco31I GGTCTC 1 cut(s) 116
Eco32I GATATC 1 cut(s) 925
Eco47I GGWCC 1 cut(s) 244
Eco88I CYCGRG 1 cut(s) 32
Eco91I GGTNACC 1 cut(s) 698
EcoNI CCTNNNNNAGG 1 cut(s) 1083
EcoO109I RGGNCCY 1 cut(s) 1017
EcoO65I GGTNACC 1 cut(s) 698
EcoRII CCWGG 4 cut(s) 419, 694, 904, 927
EcoRV GATATC 1 cut(s) 925
EcoT14I CCWWGG 3 cut(s) 390, 958, 1150
EcoT22I ATGCAT 2 cut(s) 530, 1309
ErhI CCWWGG 3 cut(s) 390, 958, 1150
FaeI CATG 8 cut(s) 56, 394, 772, 864, 919, 1258, 1340, 1406
FatI CATG 8 cut(s) 52, 390, 768, 860, 915, 1254, 1336, 1402
FauNDI CATATG 1 cut(s) 478
FbaI TGATCA 1 cut(s) 1464
Fnu4HI GCNGC 5 cut(s) 265, 500, 518, 1113, 1116
FokI GGATG 5 cut(s) 389, 726, 949, 1001, 1081
Fsp4HI GCNGC 5 cut(s) 265, 500, 518, 1113, 1116
FspBI CTAG 6 cut(s) 147, 893, 945, 959, 1319, 1416
GluI GCNGC 5 cut(s) 265, 500, 518, 1113, 1116
GsaI CCCAGC 1 cut(s) 1068
GsuI CTGGAG 1 cut(s) 185
HaeIII GGCC 7 cut(s) 267, 352, 389, 475, 904, 1018, 1213
HgaI GACGC 1 cut(s) 604
Hin1I GRCGYC 1 cut(s) 615
Hin1II CATG 8 cut(s) 56, 394, 772, 864, 919, 1258, 1340, 1406
HindIII AAGCTT 1 cut(s) 627
HinfI GANTC 4 cut(s) 193, 782, 1105, 1341
HphI GGTGA 1 cut(s) 35
Hpy166II GTNNAC 2 cut(s) 244, 1075
Hpy188I TCNGA 5 cut(s) 64, 301, 805, 1008, 1159
Hpy8I GTNNAC 2 cut(s) 244, 1075
HpyAV CCTTC 5 cut(s) 181, 454, 1031, 1089, 1287
HpyCH4III ACNGT 4 cut(s) 675, 1185, 1359, 1395
HpyF10VI GCNNNNNNNGC 2 cut(s) 278, 1412
HpyF3I CTNAG 2 cut(s) 113, 726
Hsp92I GRCGYC 1 cut(s) 615
Hsp92II CATG 8 cut(s) 56, 394, 772, 864, 919, 1258, 1340, 1406
Ksp22I TGATCA 1 cut(s) 1464
Kzo9I GATC 6 cut(s) 328, 463, 828, 1315, 1369, 1464
LguI GCTCTTC 1 cut(s) 165
LmnI GCTCC 4 cut(s) 97, 166, 1035, 1123
Lsp1109I GCAGC 4 cut(s) 504, 511, 1124, 1127
LweI GCATC 2 cut(s) 634, 653
MabI ACCWGGT 1 cut(s) 419
MaeI CTAG 6 cut(s) 147, 893, 945, 959, 1319, 1416
MaeIII GTNAC 2 cut(s) 616, 698
MalI GATC 6 cut(s) 330, 465, 830, 1317, 1371, 1466
MboI GATC 6 cut(s) 328, 463, 828, 1315, 1369, 1464
MboII GAAGA 9 cut(s) 32, 78, 152, 746, 805, 893, 995, 1234, 1355
MflI RGATCY 2 cut(s) 463, 828
MhlI GDGCHC 3 cut(s) 160, 1032, 1077
MluCI AATT 4 cut(s) 76, 358, 621, 1050
MlyI GAGTC 1 cut(s) 1099
MmeI TCCRAC 1 cut(s) 1027
Mph1103I ATGCAT 2 cut(s) 530, 1309
MroXI GAANNNNTTC 1 cut(s) 1168
MseI TTAA 5 cut(s) 141, 344, 489, 558, 972
MslI CAYNNNNRTG 1 cut(s) 1007
MspA1I CMGCKG 1 cut(s) 1064
MspR9I CCNGG 4 cut(s) 421, 696, 906, 929
Mva1269I GAATGC 1 cut(s) 1288
MvaI CCWGG 4 cut(s) 421, 696, 906, 929
MwoI GCNNNNNNNGC 2 cut(s) 278, 1412
NcoI CCATGG 1 cut(s) 390
NdeI CATATG 1 cut(s) 478
NdeII GATC 6 cut(s) 328, 463, 828, 1315, 1369, 1464
NlaIII CATG 8 cut(s) 56, 394, 772, 864, 919, 1258, 1340, 1406
NlaIV GGNNCC 2 cut(s) 956, 1019
NmeAIII GCCGAG 1 cut(s) 880
NmuCI GTSAC 1 cut(s) 616
NsiI ATGCAT 2 cut(s) 530, 1309
NspI RCATGY 1 cut(s) 1258
PaeR7I CTCGAG 1 cut(s) 32
PciSI GCTCTTC 1 cut(s) 165
PctI GAATGC 1 cut(s) 1288
PdmI GAANNNNTTC 1 cut(s) 1168
PfeI GAWTC 3 cut(s) 193, 782, 1341
PflMI CCANNNNNTGG 1 cut(s) 53
PfoI TCCNGGA 1 cut(s) 927
PkrI GCNGC 5 cut(s) 266, 501, 519, 1114, 1117
PleI GAGTC 1 cut(s) 1099
PpsI GAGTC 1 cut(s) 1099
Psp6I CCWGG 4 cut(s) 419, 694, 904, 927
PspEI GGTNACC 1 cut(s) 698
PspFI CCCAGC 1 cut(s) 1064
PspGI CCWGG 4 cut(s) 419, 694, 904, 927
PspN4I GGNNCC 2 cut(s) 956, 1019
PspPI GGNCC 5 cut(s) 244, 266, 351, 1017, 1212
PspXI VCTCGAGB 1 cut(s) 32
PstI CTGCAG 2 cut(s) 274, 522
PsuI RGATCY 2 cut(s) 463, 828
PvuII CAGCTG 1 cut(s) 1064
RsaI GTAC 3 cut(s) 672, 1060, 1148
RsaNI GTAC 3 cut(s) 671, 1059, 1147
RseI CAYNNNNRTG 1 cut(s) 1007
SapI GCTCTTC 1 cut(s) 165
SaqAI TTAA 5 cut(s) 141, 344, 489, 558, 972
SatI GCNGC 5 cut(s) 265, 500, 518, 1113, 1116
Sau3AI GATC 6 cut(s) 328, 463, 828, 1315, 1369, 1464
Sau96I GGNCC 5 cut(s) 244, 266, 351, 1017, 1212
SbfI CCTGCAGG 1 cut(s) 274
SchI GAGTC 1 cut(s) 1099
ScrFI CCNGG 4 cut(s) 421, 696, 906, 929
SdaI CCTGCAGG 1 cut(s) 274
SduI GDGCHC 3 cut(s) 160, 1032, 1077
SexAI ACCWGGT 1 cut(s) 419
SfaNI GCATC 2 cut(s) 634, 653
SfcI CTRYAG 3 cut(s) 124, 270, 518
Sfr274I CTCGAG 1 cut(s) 32
SinI GGWCC 1 cut(s) 244
SlaI CTCGAG 1 cut(s) 32
SmiMI CAYNNNNRTG 1 cut(s) 1007
SmlI CTYRAG 3 cut(s) 32, 503, 1268
SmoI CTYRAG 3 cut(s) 32, 503, 1268
Sse8387I CCTGCAGG 1 cut(s) 274
Sse9I AATT 4 cut(s) 76, 358, 621, 1050
SsiI CCGC 3 cut(s) 264, 281, 1056
SspMI CTAG 6 cut(s) 147, 893, 945, 959, 1319, 1416
StyD4I CCNGG 4 cut(s) 419, 694, 904, 927
StyI CCWWGG 3 cut(s) 390, 958, 1150
TaaI ACNGT 4 cut(s) 675, 1185, 1359, 1395
TaqI TCGA 8 cut(s) 33, 89, 103, 198, 323, 411, 732, 1354
TasI AATT 4 cut(s) 76, 358, 621, 1050
TatI WGTACW 1 cut(s) 670
TauI GCSGC 1 cut(s) 267
TfiI GAWTC 3 cut(s) 193, 782, 1341
Tru1I TTAA 5 cut(s) 141, 344, 489, 558, 972
Tru9I TTAA 5 cut(s) 141, 344, 489, 558, 972
TscAI CASTG 1 cut(s) 1398
TseFI GTSAC 1 cut(s) 616
TseI GCWGC 4 cut(s) 499, 517, 1112, 1115
Tsp45I GTSAC 1 cut(s) 616
TspDTI ATGAA 8 cut(s) 41, 430, 462, 539, 757, 849, 932, 1194
TspRI CASTG 1 cut(s) 1398
Van91I CCANNNNNTGG 1 cut(s) 53
VneI GTGCAC 1 cut(s) 1073
VpaK11BI GGWCC 1 cut(s) 244
XagI CCTNNNNNAGG 1 cut(s) 1083
XbaI TCTAGA 1 cut(s) 1318
XceI RCATGY 1 cut(s) 1258
XcmI CCANNNNNNNNNTGG 1 cut(s) 710
XhoI CTCGAG 1 cut(s) 32
XmaJI CCTAGG 1 cut(s) 958
XmnI GAANNNNTTC 1 cut(s) 1168
XspI CTAG 6 cut(s) 147, 893, 945, 959, 1319, 1416
Zsp2I ATGCAT 2 cut(s) 530, 1309
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.