Rmu_sc0008068.1_g000002

Lycopene beta cyclase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008068.1
Physical Location & Seq
Reverse (-)
4287 .. 5744
1458 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008068.1_g000002.1.cds

Sequence Viewer

Length: 1371 bp
atggatacattactcaaaacacataacaagctcgagtttcttcacccacttcatgggttttcagagaaagtgagtaattggaactctgcaaagcaggagcttcgatgtggtctcaggaagtcctatagaactggtcgtgttaaggctagtagtagtgctcttctggagcttgtgcctgaaaccaagaaggagaatctcgactttgagcttcccttgtatgacccatcaaagggtcttgtggtggaccttgcagtcgtgggaggcggccctgcagggcttgcggtggcacagcaagtctcggaggcagggctctccgtttgctcgattgatccctctcccaagttgatctggcccaacaattatggtgtttgggtggatgagtttgaggccatggatttgcttgattgcctcgacactacctggtccggtgctgttgtgttcatagatgaacaatcgaagaaggatcttgataggccatatgggagggttaataggaagcagctcaagtccaaaatgctgcagaaatgcatttcaaatggtgtcaagtttcatcaagctaaagtcagtttttcaagatgccttgtacagtatgataagccttacaacccaggttaccaagtggcgtatgggattttggcagaggtcgaagaacatccatttgatgtggataagatggttttcatggattggagagattcacatttgaagaatagtcctgaactgaaagagagaaatagtaagatccctacttttctatatgcaatgcctttttcatccaacaggatatttcttgaagaaacctccctagttgctcggcctggactacccatgaaagatatccaggaaaggatggttgctagattgaggcacctaggcataaaggttaagagcattgaagaggatgagcattgtgtcattccgatgggcgggcccctcccggtgctccctcaaagagttgttggaattggaggtacagctgggatggtgcatccttcaacaggatatatggttgcaaggactctggcagcagctcctattgttgcaaatgccatagttcagtaccttggttctgatagaagtctttcagggaatgaactttcagcagaagtttggaaagatttgtggcccatacaaaggaggagacaaagggagttcttctgttttggcatgtccattctgctcaagctggatttgaatgccacaagaaggtttttcaatgcattttttgatctagaacctcgttattggcatggattcttgtcatctcgactgtttcttcccgatcttgtattttttgggctttcactgttttctcatgcttcaaatgctagtagattagaaataatgggaaagggactattcctttggtaa

Protein Analysis

456

Amino Acids

51.52

Weight (kDa)

8.67

Isoelectric Point (pI)

38.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 251
AccB1I GGYRCC 1 cut(s) 867
AccB7I CCANNNNNTGG 1 cut(s) 53
AciI CCGC 3 cut(s) 264, 281, 927
AclWI GGATC 3 cut(s) 323, 471, 736
AfaI GTAC 3 cut(s) 585, 973, 1061
AfiI CCNNNNNNNGG 7 cut(s) 53, 229, 230, 926, 998, 1134, 1206
AgsI TTSAA 9 cut(s) 534, 573, 706, 794, 896, 996, 1195, 1216, 1323
AjnI CCWGG 4 cut(s) 419, 607, 817, 840
AluBI AGCT 9 cut(s) 31, 100, 169, 208, 502, 557, 977, 1031, 1186
AluI AGCT 9 cut(s) 31, 100, 169, 208, 502, 557, 977, 1031, 1186
Alw21I GWGCWC 2 cut(s) 160, 945
Alw26I GTCTC 3 cut(s) 116, 301, 1135
AlwI GGATC 3 cut(s) 323, 471, 736
Ama87I CYCGRG 1 cut(s) 32
AoxI GGCC 7 cut(s) 265, 350, 387, 473, 815, 929, 1124
ApaI GGGCCC 1 cut(s) 933
ApeKI GCWGC 4 cut(s) 499, 517, 1025, 1028
ArsI GACNNNNNNTTYG 1 cut(s) 1347
Asp700I GAANNNNTTC 1 cut(s) 1081
AspA2I CCTAGG 1 cut(s) 871
AspS9I GGNCC 7 cut(s) 244, 266, 351, 423, 929, 930, 1125
AsuC2I CCSGG 1 cut(s) 938
AsuHPI GGTGA 1 cut(s) 35
AvaI CYCGRG 1 cut(s) 32
AvaII GGWCC 2 cut(s) 244, 423
AvrII CCTAGG 1 cut(s) 871
BaeGI GKGCMC 1 cut(s) 933
BanI GGYRCC 1 cut(s) 867
BanII GRGCYC 2 cut(s) 312, 933
Bbv12I GWGCWC 2 cut(s) 160, 945
BbvI GCAGC 4 cut(s) 504, 511, 1037, 1040
BccI CCATC 5 cut(s) 232, 667, 844, 916, 976
BcgI CGANNNNNNTGC 2 cut(s) 83, 117
BciT130I CCWGG 4 cut(s) 421, 609, 819, 842
BcnI CCSGG 1 cut(s) 938
BcoDI GTCTC 3 cut(s) 116, 301, 1135
BfaI CTAG 6 cut(s) 147, 806, 858, 872, 1232, 1329
BfmI CTRYAG 3 cut(s) 124, 270, 518
BisI GCNGC 5 cut(s) 265, 500, 518, 1026, 1029
BlnI CCTAGG 1 cut(s) 871
BlsI GCNGC 5 cut(s) 266, 501, 519, 1027, 1030
Bme1390I CCNGG 5 cut(s) 421, 609, 819, 842, 938
Bme18I GGWCC 2 cut(s) 244, 423
BmeT110I CYCGRG 1 cut(s) 32
BmgT120I GGNCC 7 cut(s) 244, 266, 351, 423, 929, 930, 1125
BmiI GGNNCC 3 cut(s) 869, 931, 932
BmrFI CCNGG 5 cut(s) 421, 609, 819, 842, 938
BmsI GCATC 2 cut(s) 566, 997
BpmI CTGGAG 1 cut(s) 185
BpuEI CTTGAG 2 cut(s) 488, 1166
BpuMI CCSGG 1 cut(s) 938
BsaI GGTCTC 1 cut(s) 116
BsaJI CCNNGG 4 cut(s) 390, 607, 871, 1063
BsaWI WCCGGW 1 cut(s) 425
Bsc4I CCNNNNNNNGG 7 cut(s) 53, 229, 230, 926, 998, 1134, 1206
Bse1I ACTGG 1 cut(s) 136
Bse3DI GCAATG 1 cut(s) 768
BseBI CCWGG 4 cut(s) 421, 609, 819, 842
BseDI CCNNGG 4 cut(s) 390, 607, 871, 1063
BseGI GGATG 7 cut(s) 382, 652, 773, 855, 907, 987, 988
BseLI CCNNNNNNNGG 7 cut(s) 53, 229, 230, 926, 998, 1134, 1206
BseMI GCAATG 1 cut(s) 768
BseMII CTCAG 1 cut(s) 127
BseNI ACTGG 1 cut(s) 136
BseRI GAGGAG 1 cut(s) 1153
BseSI GKGCMC 1 cut(s) 933
BseXI GCAGC 4 cut(s) 504, 511, 1037, 1040
BseYI CCCAGC 1 cut(s) 977
BshFI GGCC 7 cut(s) 267, 352, 389, 475, 817, 931, 1126
BshNI GGYRCC 1 cut(s) 867
BsiHKAI GWGCWC 2 cut(s) 160, 945
BsiHKCI CYCGRG 1 cut(s) 32
BsiSI CCGG 2 cut(s) 426, 938
BslI CCNNNNNNNGG 7 cut(s) 53, 229, 230, 926, 998, 1134, 1206
BsmAI GTCTC 3 cut(s) 116, 301, 1135
BsmI GAATGC 1 cut(s) 1201
BsnI GGCC 7 cut(s) 267, 352, 389, 475, 817, 931, 1126
Bso31I GGTCTC 1 cut(s) 116
BsoBI CYCGRG 1 cut(s) 32
Bsp120I GGGCCC 1 cut(s) 929
Bsp1286I GDGCHC 4 cut(s) 160, 312, 933, 945
Bsp1407I TGTACA 1 cut(s) 583
Bsp143I GATC 6 cut(s) 328, 345, 463, 741, 1228, 1282
Bsp19I CCATGG 1 cut(s) 390
BspACI CCGC 3 cut(s) 264, 281, 927
BspANI GGCC 7 cut(s) 267, 352, 389, 475, 817, 931, 1126
BspCNI CTCAG 1 cut(s) 126
BspLI GGNNCC 3 cut(s) 869, 931, 932
BspMAI CTGCAG 2 cut(s) 274, 522
BspPI GGATC 3 cut(s) 323, 471, 736
BspQI GCTCTTC 1 cut(s) 165
BspT107I GGYRCC 1 cut(s) 867
BspTNI GGTCTC 1 cut(s) 116
BsrDI GCAATG 1 cut(s) 768
BsrGI TGTACA 1 cut(s) 583
BsrI ACTGG 1 cut(s) 136
BssECI CCNNGG 4 cut(s) 390, 607, 871, 1063
BssMI GATC 6 cut(s) 328, 345, 463, 741, 1228, 1282
BssT1I CCWWGG 3 cut(s) 390, 871, 1063
Bst2UI CCWGG 4 cut(s) 421, 609, 819, 842
Bst4CI ACNGT 3 cut(s) 588, 1272, 1308
Bst6I CTCTTC 2 cut(s) 165, 891
BstAPI GCANNNNNTGC 1 cut(s) 278
BstAUI TGTACA 1 cut(s) 583
BstC8I GCNNGC 2 cut(s) 279, 929
BstDEI CTNAG 1 cut(s) 113
BstDSI CCRYGG 1 cut(s) 390
BstEII GGTNACC 1 cut(s) 611
BstENI CCTNNNNNAGG 1 cut(s) 996
BstF5I GGATG 7 cut(s) 382, 652, 773, 855, 907, 987, 988
BstKTI GATC 6 cut(s) 331, 348, 466, 744, 1231, 1285
BstMAI GTCTC 3 cut(s) 116, 301, 1135
BstMBI GATC 6 cut(s) 328, 345, 463, 741, 1228, 1282
BstMWI GCNNNNNNNGC 2 cut(s) 278, 1325
BstNI CCWGG 4 cut(s) 421, 609, 819, 842
BstNSI RCATGY 1 cut(s) 1171
BstPI GGTNACC 1 cut(s) 611
BstSCI CCNGG 5 cut(s) 419, 607, 817, 840, 936
BstSFI CTRYAG 3 cut(s) 124, 270, 518
BstSLI GKGCMC 1 cut(s) 933
BstV1I GCAGC 4 cut(s) 504, 511, 1037, 1040
BstX2I RGATCY 2 cut(s) 463, 741
BstYI RGATCY 2 cut(s) 463, 741
BsuRI GGCC 7 cut(s) 267, 352, 389, 475, 817, 931, 1126
BtgI CCRYGG 1 cut(s) 390
BtsCI GGATG 7 cut(s) 382, 652, 773, 855, 907, 987, 988
BtsIMutI CAGTG 1 cut(s) 1304
Cac8I GCNNGC 2 cut(s) 279, 929
Cfr13I GGNCC 7 cut(s) 244, 266, 351, 423, 929, 930, 1125
CsiI ACCWGGT 1 cut(s) 419
Csp6I GTAC 3 cut(s) 584, 972, 1060
CviAII CATG 7 cut(s) 53, 391, 682, 829, 1168, 1250, 1316
CviQI GTAC 3 cut(s) 584, 972, 1060
DdeI CTNAG 1 cut(s) 113
DpnI GATC 6 cut(s) 330, 347, 465, 743, 1230, 1284
DpnII GATC 6 cut(s) 328, 345, 463, 741, 1228, 1282
DrdI GACNNNNNNGTC 1 cut(s) 251
DseDI GACNNNNNNGTC 1 cut(s) 251
Eam1104I CTCTTC 2 cut(s) 165, 891
EarI CTCTTC 2 cut(s) 165, 891
Eco130I CCWWGG 3 cut(s) 390, 871, 1063
Eco24I GRGCYC 2 cut(s) 312, 933
Eco31I GGTCTC 1 cut(s) 116
Eco32I GATATC 1 cut(s) 838
Eco47I GGWCC 2 cut(s) 244, 423
Eco88I CYCGRG 1 cut(s) 32
Eco91I GGTNACC 1 cut(s) 611
EcoNI CCTNNNNNAGG 1 cut(s) 996
EcoO109I RGGNCCY 1 cut(s) 930
EcoO65I GGTNACC 1 cut(s) 611
EcoRII CCWGG 4 cut(s) 419, 607, 817, 840
EcoRV GATATC 1 cut(s) 838
EcoT14I CCWWGG 3 cut(s) 390, 871, 1063
EcoT22I ATGCAT 2 cut(s) 530, 1222
EcoT38I GRGCYC 2 cut(s) 312, 933
ErhI CCWWGG 3 cut(s) 390, 871, 1063
FaeI CATG 7 cut(s) 56, 394, 685, 832, 1171, 1253, 1319
FatI CATG 7 cut(s) 52, 390, 681, 828, 1167, 1249, 1315
FauI CCCGC 1 cut(s) 920
FauNDI CATATG 1 cut(s) 478
Fnu4HI GCNGC 5 cut(s) 265, 500, 518, 1026, 1029
FokI GGATG 7 cut(s) 389, 639, 760, 862, 914, 975, 994
FriOI GRGCYC 2 cut(s) 312, 933
Fsp4HI GCNGC 5 cut(s) 265, 500, 518, 1026, 1029
FspBI CTAG 6 cut(s) 147, 806, 858, 872, 1232, 1329
GluI GCNGC 5 cut(s) 265, 500, 518, 1026, 1029
GsaI CCCAGC 1 cut(s) 981
GsuI CTGGAG 1 cut(s) 185
HaeIII GGCC 7 cut(s) 267, 352, 389, 475, 817, 931, 1126
HapII CCGG 2 cut(s) 426, 938
Hin1II CATG 7 cut(s) 56, 394, 685, 832, 1171, 1253, 1319
HinfI GANTC 4 cut(s) 193, 695, 1018, 1254
HpaII CCGG 2 cut(s) 426, 938
HphI GGTGA 1 cut(s) 35
Hpy166II GTNNAC 1 cut(s) 244
Hpy188I TCNGA 4 cut(s) 64, 301, 921, 1072
Hpy8I GTNNAC 1 cut(s) 244
HpyAV CCTTC 4 cut(s) 181, 454, 1002, 1200
HpyCH4III ACNGT 3 cut(s) 588, 1272, 1308
HpyF10VI GCNNNNNNNGC 2 cut(s) 278, 1325
HpyF3I CTNAG 1 cut(s) 113
Hsp92II CATG 7 cut(s) 56, 394, 685, 832, 1171, 1253, 1319
Kzo9I GATC 6 cut(s) 328, 345, 463, 741, 1228, 1282
LguI GCTCTTC 1 cut(s) 165
LmnI GCTCC 4 cut(s) 97, 166, 948, 1036
Lsp1109I GCAGC 4 cut(s) 504, 511, 1037, 1040
LweI GCATC 2 cut(s) 566, 997
MabI ACCWGGT 1 cut(s) 419
MaeI CTAG 6 cut(s) 147, 806, 858, 872, 1232, 1329
MaeIII GTNAC 1 cut(s) 611
MalI GATC 6 cut(s) 330, 347, 465, 743, 1230, 1284
MboI GATC 6 cut(s) 328, 345, 463, 741, 1228, 1282
MboII GAAGA 9 cut(s) 32, 152, 469, 659, 718, 806, 908, 1147, 1268
MflI RGATCY 2 cut(s) 463, 741
MhlI GDGCHC 4 cut(s) 160, 312, 933, 945
MluCI AATT 3 cut(s) 76, 358, 963
MlyI GAGTC 1 cut(s) 1012
MmeI TCCRAC 2 cut(s) 801, 940
Mph1103I ATGCAT 2 cut(s) 530, 1222
MroXI GAANNNNTTC 1 cut(s) 1081
MseI TTAA 3 cut(s) 141, 489, 885
MslI CAYNNNNRTG 1 cut(s) 920
MspA1I CMGCKG 1 cut(s) 977
MspI CCGG 2 cut(s) 426, 938
MspR9I CCNGG 5 cut(s) 421, 609, 819, 842, 938
Mva1269I GAATGC 1 cut(s) 1201
MvaI CCWGG 4 cut(s) 421, 609, 819, 842
MwoI GCNNNNNNNGC 2 cut(s) 278, 1325
NciI CCSGG 1 cut(s) 938
NcoI CCATGG 1 cut(s) 390
NdeI CATATG 1 cut(s) 478
NdeII GATC 6 cut(s) 328, 345, 463, 741, 1228, 1282
NlaIII CATG 7 cut(s) 56, 394, 685, 832, 1171, 1253, 1319
NlaIV GGNNCC 3 cut(s) 869, 931, 932
NmeAIII GCCGAG 1 cut(s) 793
NsiI ATGCAT 2 cut(s) 530, 1222
NspI RCATGY 1 cut(s) 1171
PaeR7I CTCGAG 1 cut(s) 32
PciSI GCTCTTC 1 cut(s) 165
PctI GAATGC 1 cut(s) 1201
PdmI GAANNNNTTC 1 cut(s) 1081
PfeI GAWTC 3 cut(s) 193, 695, 1254
PflMI CCANNNNNTGG 1 cut(s) 53
PfoI TCCNGGA 1 cut(s) 840
PkrI GCNGC 5 cut(s) 266, 501, 519, 1027, 1030
PleI GAGTC 1 cut(s) 1012
PpsI GAGTC 1 cut(s) 1012
Psp6I CCWGG 4 cut(s) 419, 607, 817, 840
PspEI GGTNACC 1 cut(s) 611
PspFI CCCAGC 1 cut(s) 977
PspGI CCWGG 4 cut(s) 419, 607, 817, 840
PspN4I GGNNCC 3 cut(s) 869, 931, 932
PspOMI GGGCCC 1 cut(s) 929
PspPI GGNCC 7 cut(s) 244, 266, 351, 423, 929, 930, 1125
PspXI VCTCGAGB 1 cut(s) 32
PstI CTGCAG 2 cut(s) 274, 522
PsuI RGATCY 2 cut(s) 463, 741
PvuII CAGCTG 1 cut(s) 977
RsaI GTAC 3 cut(s) 585, 973, 1061
RsaNI GTAC 3 cut(s) 584, 972, 1060
RseI CAYNNNNRTG 1 cut(s) 920
SapI GCTCTTC 1 cut(s) 165
SaqAI TTAA 3 cut(s) 141, 489, 885
SatI GCNGC 5 cut(s) 265, 500, 518, 1026, 1029
Sau3AI GATC 6 cut(s) 328, 345, 463, 741, 1228, 1282
Sau96I GGNCC 7 cut(s) 244, 266, 351, 423, 929, 930, 1125
SbfI CCTGCAGG 1 cut(s) 274
SchI GAGTC 1 cut(s) 1012
ScrFI CCNGG 5 cut(s) 421, 609, 819, 842, 938
SdaI CCTGCAGG 1 cut(s) 274
SduI GDGCHC 4 cut(s) 160, 312, 933, 945
SexAI ACCWGGT 1 cut(s) 419
SfaNI GCATC 2 cut(s) 566, 997
SfcI CTRYAG 3 cut(s) 124, 270, 518
Sfr274I CTCGAG 1 cut(s) 32
SinI GGWCC 2 cut(s) 244, 423
SlaI CTCGAG 1 cut(s) 32
SmiMI CAYNNNNRTG 1 cut(s) 920
SmlI CTYRAG 3 cut(s) 32, 503, 1181
SmoI CTYRAG 3 cut(s) 32, 503, 1181
Sse8387I CCTGCAGG 1 cut(s) 274
Sse9I AATT 3 cut(s) 76, 358, 963
SsiI CCGC 3 cut(s) 264, 281, 927
SspMI CTAG 6 cut(s) 147, 806, 858, 872, 1232, 1329
StyD4I CCNGG 5 cut(s) 419, 607, 817, 840, 936
StyI CCWWGG 3 cut(s) 390, 871, 1063
TaaI ACNGT 3 cut(s) 588, 1272, 1308
TaqI TCGA 8 cut(s) 33, 103, 198, 323, 411, 455, 645, 1267
TasI AATT 3 cut(s) 76, 358, 963
TatI WGTACW 1 cut(s) 583
TauI GCSGC 1 cut(s) 267
TfiI GAWTC 3 cut(s) 193, 695, 1254
Tru1I TTAA 3 cut(s) 141, 489, 885
Tru9I TTAA 3 cut(s) 141, 489, 885
TscAI CASTG 1 cut(s) 1311
TseI GCWGC 4 cut(s) 499, 517, 1025, 1028
TspDTI ATGAA 8 cut(s) 41, 430, 462, 539, 670, 762, 845, 1107
TspGWI ACGGA 1 cut(s) 304
TspRI CASTG 1 cut(s) 1311
Van91I CCANNNNNTGG 1 cut(s) 53
VpaK11BI GGWCC 2 cut(s) 244, 423
XagI CCTNNNNNAGG 1 cut(s) 996
XbaI TCTAGA 1 cut(s) 1231
XceI RCATGY 1 cut(s) 1171
XcmI CCANNNNNNNNNTGG 1 cut(s) 623
XhoI CTCGAG 1 cut(s) 32
XmaJI CCTAGG 1 cut(s) 871
XmnI GAANNNNTTC 1 cut(s) 1081
XspI CTAG 6 cut(s) 147, 806, 858, 872, 1232, 1329
Zsp2I ATGCAT 2 cut(s) 530, 1222
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.