Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010311.1

Orthogroup ID

OG0007985

Physical Location & Seq

Genomic Coordinates Forward (+)

5954 .. 7093

Gene Structure 1140 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010311.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

atggtgtttgggtggatgagtttgaggccatggatttgcttgattgcctcgacagtcgacactacctggtctggtgctgttgtgttcatagatgaacaatcaaagaaggatcttgataggccatatgggagggttaataggaagcagctcaagtccaaaatgctgcagaaatgcatttcaaatggtgtcaagtttcatcaagctaaagtcagtttttcaagatgccttgtacagtatgataagccttacaatccaggttaccaagtggcgtatgggattttggctgaggtcgaagaacatccatttgatgtggataagatggttttcatggattggagagattcgcatttgaagaatagtcctgaactgaaagagagaaatagtaagatccctacttttctatatgcaatgcctttttcatccaacaggatatttcttgaagaaacctccctagttgctcggcctggactacccatgaaagatatccaggaaaggatggttgctagattgaggcacctaggcataaaagttaagagcattgaagaggatgagcattgtgtcattccaatgggcgggcccctcccagtgctccctcaaagagttgttggaattggcggtacagctgggatggtgcacccttcaacagggtatatggttgcgaggactctggcagcagctcctattgttgcaaatgccatagttcagtaccttggttctgataaaagtctttcaggaaatgaactttcagcagaagtttggaaagatttatggcccatacaaaggaggagacaaagggagttcttctgtttcggcatgtccattctgctcaagctggatttgaaagccacaagaaggtttttcaatgcattttttgatctagaacctcgttattggcatggattcttgtcatctcgactgtttcttcccgatcttgtattttttgggctttcactgttttctcatgcttcaaatgctagtagattagaaataatgggaaagggaactattcctttggtaaagatgatcaacaacttgatacaggatagagattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009509 GO:0009536 GO:0009975 GO:0009987 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0016853 GO:0016860 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0045436 GO:0046148 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00906 ko01100 ko01110 map00906 map01100 map01110

Pfam Domains

Protein Families

Lycopene_cycl

Protein Analysis

350

Amino Acids

39.97

Weight (kDa)

9.41

Isoelectric Point (pI)

41.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007985)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10230 AT3G10230
fragaria_vesca	FvH4_6g25130 FvH4_6g25130 FvH4_6g25130 FvH4_6g25130
malus_domestica	MD00G1049000.v1.1 MD00G1074700.v1.1
prunus_persica	Prupe.7G046100_v2.0.a1
pyrus_communis	pycom14g07340
rosa_chinensis	RchiOBHm_Chr2g0125001
rosa_laevigata	RLG00000018841
rosa_multiflora	Rmu_sc0000796.1_g000023 Rmu_sc0000796.1_g000027 Rmu_sc0008068.1_g000002 Rmu_sc0010311.1_g000002
rosa_roxburghii	Rroxscaffold_2G00118470 Rroxscaffold_2G00118770
rosa_rugosa	Rorug02G0254700
rosa_samantha	Rh2AG313400 Rh2BG321700 Rh2CG302900 Rh2DG338800
rosa_wichuraiana	Rw2G025310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	513
AccI	GTMKAC	1 cut(s)	57
AciI	CCGC	2 cut(s)	573, 615
AclWI	GGATC	2 cut(s)	117, 382
AfaI	GTAC	3 cut(s)	231, 619, 707
AfiI	CCNNNNNNNGG	4 cut(s)	572, 644, 780, 852
AgsI	TTSAA	9 cut(s)	180, 219, 352, 440, 542, 642, 841, 862, 969
AjnI	CCWGG	4 cut(s)	65, 253, 463, 486
AluBI	AGCT	5 cut(s)	148, 203, 623, 677, 832
AluI	AGCT	5 cut(s)	148, 203, 623, 677, 832
Alw21I	GWGCWC	2 cut(s)	591, 636
Alw26I	GTCTC	1 cut(s)	781
Alw44I	GTGCAC	1 cut(s)	632
AlwI	GGATC	2 cut(s)	117, 382
AoxI	GGCC	5 cut(s)	26, 119, 461, 575, 770
ApaI	GGGCCC	1 cut(s)	579
ApaLI	GTGCAC	1 cut(s)	632
ApeKI	GCWGC	4 cut(s)	145, 163, 671, 674
AspA2I	CCTAGG	1 cut(s)	517
AspS9I	GGNCC	3 cut(s)	575, 576, 771
AvrII	CCTAGG	1 cut(s)	517
BaeGI	GKGCMC	2 cut(s)	579, 636
BanI	GGYRCC	1 cut(s)	513
BanII	GRGCYC	1 cut(s)	579
Bbv12I	GWGCWC	2 cut(s)	591, 636
BbvCI	CCTCAGC	1 cut(s)	285
BbvI	GCAGC	4 cut(s)	150, 157, 683, 686
BccI	CCATC	3 cut(s)	313, 490, 622
BciT130I	CCWGG	4 cut(s)	67, 255, 465, 488
BclI	TGATCA	1 cut(s)	1023
BcoDI	GTCTC	1 cut(s)	781
BfaI	CTAG	5 cut(s)	452, 504, 518, 878, 975
BfmI	CTRYAG	1 cut(s)	164
BisI	GCNGC	4 cut(s)	146, 164, 672, 675
BlnI	CCTAGG	1 cut(s)	517
BlsI	GCNGC	4 cut(s)	147, 165, 673, 676
Bme1390I	CCNGG	4 cut(s)	67, 255, 465, 488
BmgT120I	GGNCC	3 cut(s)	575, 576, 771
BmiI	GGNNCC	3 cut(s)	515, 577, 578
BmrFI	CCNGG	4 cut(s)	67, 255, 465, 488
BmrI	ACTGGG	1 cut(s)	578
BmsI	GCATC	1 cut(s)	212
BmuI	ACTGGG	1 cut(s)	578
Bpu10I	CCTNAGC	1 cut(s)	285
BpuEI	CTTGAG	2 cut(s)	134, 812
BsaJI	CCNNGG	3 cut(s)	29, 517, 709
Bsc4I	CCNNNNNNNGG	4 cut(s)	572, 644, 780, 852
Bse1I	ACTGG	1 cut(s)	584
Bse3DI	GCAATG	1 cut(s)	414
BseBI	CCWGG	4 cut(s)	67, 255, 465, 488
BseDI	CCNNGG	3 cut(s)	29, 517, 709
BseGI	GGATG	6 cut(s)	21, 298, 419, 501, 553, 633
BseLI	CCNNNNNNNGG	4 cut(s)	572, 644, 780, 852
BseMI	GCAATG	1 cut(s)	414
BseMII	CTCAG	1 cut(s)	276
BseNI	ACTGG	1 cut(s)	584
BseRI	GAGGAG	1 cut(s)	799
BseSI	GKGCMC	2 cut(s)	579, 636
BseXI	GCAGC	4 cut(s)	150, 157, 683, 686
BseYI	CCCAGC	1 cut(s)	623
BshFI	GGCC	5 cut(s)	28, 121, 463, 577, 772
BshNI	GGYRCC	1 cut(s)	513
BsiHKAI	GWGCWC	2 cut(s)	591, 636
BslI	CCNNNNNNNGG	4 cut(s)	572, 644, 780, 852
BsmAI	GTCTC	1 cut(s)	781
BsnI	GGCC	5 cut(s)	28, 121, 463, 577, 772
Bsp120I	GGGCCC	1 cut(s)	575
Bsp1286I	GDGCHC	3 cut(s)	579, 591, 636
Bsp1407I	TGTACA	1 cut(s)	229
Bsp143I	GATC	5 cut(s)	109, 387, 874, 928, 1023
Bsp19I	CCATGG	1 cut(s)	29
BspACI	CCGC	2 cut(s)	573, 615
BspANI	GGCC	5 cut(s)	28, 121, 463, 577, 772
BspCNI	CTCAG	1 cut(s)	277
BspLI	GGNNCC	3 cut(s)	515, 577, 578
BspMAI	CTGCAG	1 cut(s)	168
BspPI	GGATC	2 cut(s)	117, 382
BspT107I	GGYRCC	1 cut(s)	513
BsrDI	GCAATG	1 cut(s)	414
BsrGI	TGTACA	1 cut(s)	229
BsrI	ACTGG	1 cut(s)	584
BssECI	CCNNGG	3 cut(s)	29, 517, 709
BssMI	GATC	5 cut(s)	109, 387, 874, 928, 1023
BssT1I	CCWWGG	3 cut(s)	29, 517, 709
Bst2UI	CCWGG	4 cut(s)	67, 255, 465, 488
Bst4CI	ACNGT	4 cut(s)	55, 234, 918, 954
Bst6I	CTCTTC	1 cut(s)	537
BstAUI	TGTACA	1 cut(s)	229
BstC8I	GCNNGC	1 cut(s)	575
BstDEI	CTNAG	1 cut(s)	285
BstDSI	CCRYGG	1 cut(s)	29
BstEII	GGTNACC	1 cut(s)	257
BstENI	CCTNNNNNAGG	1 cut(s)	642
BstF5I	GGATG	6 cut(s)	21, 298, 419, 501, 553, 633
BstKTI	GATC	5 cut(s)	112, 390, 877, 931, 1026
BstMAI	GTCTC	1 cut(s)	781
BstMBI	GATC	5 cut(s)	109, 387, 874, 928, 1023
BstMWI	GCNNNNNNNGC	1 cut(s)	971
BstNI	CCWGG	4 cut(s)	67, 255, 465, 488
BstNSI	RCATGY	1 cut(s)	817
BstPI	GGTNACC	1 cut(s)	257
BstSCI	CCNGG	4 cut(s)	65, 253, 463, 486
BstSFI	CTRYAG	1 cut(s)	164
BstSLI	GKGCMC	2 cut(s)	579, 636
BstV1I	GCAGC	4 cut(s)	150, 157, 683, 686
BstX2I	RGATCY	2 cut(s)	109, 387
BstYI	RGATCY	2 cut(s)	109, 387
BsuRI	GGCC	5 cut(s)	28, 121, 463, 577, 772
BtgI	CCRYGG	1 cut(s)	29
BtsCI	GGATG	6 cut(s)	21, 298, 419, 501, 553, 633
BtsIMutI	CAGTG	2 cut(s)	591, 950
Cac8I	GCNNGC	1 cut(s)	575
Cfr13I	GGNCC	3 cut(s)	575, 576, 771
CsiI	ACCWGGT	1 cut(s)	65
Csp6I	GTAC	3 cut(s)	230, 618, 706
CviAII	CATG	6 cut(s)	30, 328, 475, 814, 896, 962
CviQI	GTAC	3 cut(s)	230, 618, 706
DdeI	CTNAG	1 cut(s)	285
DpnI	GATC	5 cut(s)	111, 389, 876, 930, 1025
DpnII	GATC	5 cut(s)	109, 387, 874, 928, 1023
Eam1104I	CTCTTC	1 cut(s)	537
EarI	CTCTTC	1 cut(s)	537
Eco130I	CCWWGG	3 cut(s)	29, 517, 709
Eco24I	GRGCYC	1 cut(s)	579
Eco32I	GATATC	1 cut(s)	484
Eco91I	GGTNACC	1 cut(s)	257
EcoNI	CCTNNNNNAGG	1 cut(s)	642
EcoO109I	RGGNCCY	1 cut(s)	576
EcoO65I	GGTNACC	1 cut(s)	257
EcoRII	CCWGG	4 cut(s)	65, 253, 463, 486
EcoRV	GATATC	1 cut(s)	484
EcoT14I	CCWWGG	3 cut(s)	29, 517, 709
EcoT22I	ATGCAT	2 cut(s)	176, 868
EcoT38I	GRGCYC	1 cut(s)	579
ErhI	CCWWGG	3 cut(s)	29, 517, 709
FaeI	CATG	6 cut(s)	33, 331, 478, 817, 899, 965
FatI	CATG	6 cut(s)	29, 327, 474, 813, 895, 961
FauI	CCCGC	1 cut(s)	566
FauNDI	CATATG	1 cut(s)	124
FbaI	TGATCA	1 cut(s)	1023
FblI	GTMKAC	1 cut(s)	57
Fnu4HI	GCNGC	4 cut(s)	146, 164, 672, 675
FokI	GGATG	6 cut(s)	28, 285, 406, 508, 560, 640
FriOI	GRGCYC	1 cut(s)	579
Fsp4HI	GCNGC	4 cut(s)	146, 164, 672, 675
FspBI	CTAG	5 cut(s)	452, 504, 518, 878, 975
GluI	GCNGC	4 cut(s)	146, 164, 672, 675
GsaI	CCCAGC	1 cut(s)	627
HaeIII	GGCC	5 cut(s)	28, 121, 463, 577, 772
Hin1II	CATG	6 cut(s)	33, 331, 478, 817, 899, 965
HincII	GTYRAC	1 cut(s)	58
HindII	GTYRAC	1 cut(s)	58
HinfI	GANTC	3 cut(s)	341, 664, 900
Hpy166II	GTNNAC	2 cut(s)	58, 634
Hpy188I	TCNGA	1 cut(s)	718
Hpy188III	TCNNGA	8 cut(s)	113, 219, 362, 437, 732, 878, 912, 926
Hpy8I	GTNNAC	2 cut(s)	58, 634
HpyAV	CCTTC	3 cut(s)	100, 648, 846
HpyCH4III	ACNGT	4 cut(s)	55, 234, 918, 954
HpyCH4V	TGCA	6 cut(s)	166, 174, 407, 634, 689, 866
HpyF10VI	GCNNNNNNNGC	1 cut(s)	971
HpyF3I	CTNAG	1 cut(s)	285
Hsp92II	CATG	6 cut(s)	33, 331, 478, 817, 899, 965
Ksp22I	TGATCA	1 cut(s)	1023
Kzo9I	GATC	5 cut(s)	109, 387, 874, 928, 1023
LmnI	GCTCC	2 cut(s)	594, 682
Lsp1109I	GCAGC	4 cut(s)	150, 157, 683, 686
LweI	GCATC	1 cut(s)	212
MabI	ACCWGGT	1 cut(s)	65
MaeI	CTAG	5 cut(s)	452, 504, 518, 878, 975
MaeIII	GTNAC	1 cut(s)	257
MalI	GATC	5 cut(s)	111, 389, 876, 930, 1025
MboI	GATC	5 cut(s)	109, 387, 874, 928, 1023
MboII	GAAGA	6 cut(s)	305, 364, 452, 554, 793, 914
MflI	RGATCY	2 cut(s)	109, 387
MhlI	GDGCHC	3 cut(s)	579, 591, 636
MluCI	AATT	1 cut(s)	609
MlyI	GAGTC	1 cut(s)	658
MmeI	TCCRAC	2 cut(s)	447, 586
Mph1103I	ATGCAT	2 cut(s)	176, 868
MseI	TTAA	2 cut(s)	135, 531
MslI	CAYNNNNRTG	1 cut(s)	566
MspA1I	CMGCKG	1 cut(s)	623
MspR9I	CCNGG	4 cut(s)	67, 255, 465, 488
MvaI	CCWGG	4 cut(s)	67, 255, 465, 488
MwoI	GCNNNNNNNGC	1 cut(s)	971
NcoI	CCATGG	1 cut(s)	29
NdeI	CATATG	1 cut(s)	124
NdeII	GATC	5 cut(s)	109, 387, 874, 928, 1023
NlaIII	CATG	6 cut(s)	33, 331, 478, 817, 899, 965
NlaIV	GGNNCC	3 cut(s)	515, 577, 578
NmeAIII	GCCGAG	1 cut(s)	439
NsiI	ATGCAT	2 cut(s)	176, 868
NspI	RCATGY	1 cut(s)	817
PfeI	GAWTC	2 cut(s)	341, 900
PfoI	TCCNGGA	1 cut(s)	486
PkrI	GCNGC	4 cut(s)	147, 165, 673, 676
PleI	GAGTC	1 cut(s)	658
PpsI	GAGTC	1 cut(s)	658
Psp6I	CCWGG	4 cut(s)	65, 253, 463, 486
PspEI	GGTNACC	1 cut(s)	257
PspFI	CCCAGC	1 cut(s)	623
PspGI	CCWGG	4 cut(s)	65, 253, 463, 486
PspN4I	GGNNCC	3 cut(s)	515, 577, 578
PspOMI	GGGCCC	1 cut(s)	575
PspPI	GGNCC	3 cut(s)	575, 576, 771
PstI	CTGCAG	1 cut(s)	168
PsuI	RGATCY	2 cut(s)	109, 387
PvuII	CAGCTG	1 cut(s)	623
RsaI	GTAC	3 cut(s)	231, 619, 707
RsaNI	GTAC	3 cut(s)	230, 618, 706
RseI	CAYNNNNRTG	1 cut(s)	566
SalI	GTCGAC	1 cut(s)	56
SaqAI	TTAA	2 cut(s)	135, 531
SatI	GCNGC	4 cut(s)	146, 164, 672, 675
Sau3AI	GATC	5 cut(s)	109, 387, 874, 928, 1023
Sau96I	GGNCC	3 cut(s)	575, 576, 771
SchI	GAGTC	1 cut(s)	658
ScrFI	CCNGG	4 cut(s)	67, 255, 465, 488
SduI	GDGCHC	3 cut(s)	579, 591, 636
SexAI	ACCWGGT	1 cut(s)	65
SfaNI	GCATC	1 cut(s)	212
SfcI	CTRYAG	1 cut(s)	164
SmiMI	CAYNNNNRTG	1 cut(s)	566
SmlI	CTYRAG	2 cut(s)	149, 827
SmoI	CTYRAG	2 cut(s)	149, 827
Sse9I	AATT	1 cut(s)	609
SsiI	CCGC	2 cut(s)	573, 615
SspMI	CTAG	5 cut(s)	452, 504, 518, 878, 975
StyD4I	CCNGG	4 cut(s)	65, 253, 463, 486
StyI	CCWWGG	3 cut(s)	29, 517, 709
TaaI	ACNGT	4 cut(s)	55, 234, 918, 954
TaqI	TCGA	4 cut(s)	50, 57, 291, 913
TasI	AATT	1 cut(s)	609
TatI	WGTACW	1 cut(s)	229
TfiI	GAWTC	2 cut(s)	341, 900
Tru1I	TTAA	2 cut(s)	135, 531
Tru9I	TTAA	2 cut(s)	135, 531
TscAI	CASTG	2 cut(s)	591, 957
TseI	GCWGC	4 cut(s)	145, 163, 671, 674
TspDTI	ATGAA	7 cut(s)	76, 108, 185, 316, 408, 491, 753
TspRI	CASTG	2 cut(s)	591, 957
VneI	GTGCAC	1 cut(s)	632
XagI	CCTNNNNNAGG	1 cut(s)	642
XbaI	TCTAGA	1 cut(s)	877
XceI	RCATGY	1 cut(s)	817
XcmI	CCANNNNNNNNNTGG	1 cut(s)	269
XmaJI	CCTAGG	1 cut(s)	517
XmiI	GTMKAC	1 cut(s)	57
XspI	CTAG	5 cut(s)	452, 504, 518, 878, 975
Zsp2I	ATGCAT	2 cut(s)	176, 868

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.