Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0007985

Physical Location & Seq

Genomic Coordinates Forward (+)

9162619 .. 9164604

Gene Structure 1986 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1049000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1515 bp

ATGGATACATTGCTTAAAACGCATAACAAGCTTGCATTTTTGCACCCAATTCATGGGTTTTCGGAGAAATTGAGTAGTTCGAGCTCTTCGAAGCTTCGCAACGAGGAGTTTGGGTATGGCCTTAGGAGGTCTCGTGTGAAATTGAGTAGGGGTGGTGTTGTTAAGGCTAGTAGCAGTGCTCTTCTGGAGCTTGTGCCGGAAATTAAGAAGGAAAGTCTTGAATTTGAGCTTCCTTTGTATGACCCATCAAAGGGTCTTGTTGTGGACCTAGCTGTTGTGGGCGGTGGCCCTGCCGGGCTCGCCGTGGCACAGCAGGTTTCGGAGGCAGGCCTTTCTGTTTGCTCAATTGACCCGTCTCCCAAGTTGATTTGGCCCAATAATTATGGTGTTTGGGTGGATGAATTTGAGGCCATGGATATGCTTGATTGCCTGGATACTACCTGGTCTGGTGCTGTTGTGTACATAGACGAGGAATCGAAGAAGGATCTTAATAGACCTTATGGAAGGGTTAATCGGAAGCAGCTTAAGTCGAAAATGCTGCAAAAATGCATATCAAACGGTGTTAAATTTCACCAAGCTAAAGTTACTAAGGTTATTCATGAGGAGGAAAAATCACTGTTGACTTGCAATGACGGTGTCACAATTCAAGCTTCTGTGGTTCTCGATGCAACTGGTTTTTCAAGATGTCTTGTACAGTATGATAAGCCGTACAATCCAGGTTACCAAGTGGCTTATGGGATTTTGGCGGAGGTTGAAGAGCATCCATTTGATGTTGATAAGATGCTTTTTATGGACTGGAGAGATTCGCACTTGAACAATAATATCGAATTGAAGGAGAGAAATGGTAGGATCCCTACTTTCCTTTATGCAATGCCTTTTTCATCCAACAGGATATTTCTCGAAGAAACTTCCCTGGTAGCTCGGCCTGGTTTACCCATGAAAGATATCCAAGAAAGGATGGCCGCTAGGTTAAAGCATCTGGGCATAAAAGTTAAGAGCATTGAGGAGGATGAGCATTGTGTCATCCCAATGGGCGGACCGCTCCCGGTGCTCCCTCAGAGAGTTGTTGGAATCGGTGGTACAGCAGGGATGGTGCACCCTTCAACTGGGTATATGGTGGCGCGGACTCTGGCAGCGGCTCCTATTGTTGCAAATGCAATAGTTCGGTACCTTGGTTCAGATAGAACACTTTCAGGAAATGAAGTGTCCGCAGAAATTTGGAAAGATTTATGGCCCATACAAAGGAGGAGACAAAGGGAGTTCTTCTGTTTCGGTATGGCTATTCTGCTTAAGCTTGATTTGAAAGGTACTCGGAGGTTTTTCAATGCTTTTTTTGACCTAGAACCCCGCTATTGGCATGGATTCTTGTCATCTCGACTGTTTCTTCCCGATCTTGTATTTTTCGGGCTTTCACTGTTTTCTCATGCTTCTAATGCTAGTAGAATAGAAATTATGGCCAAGGGGACTCCTCCTTTGGTAAAGATGATCAACAACTTGATACAGGATAGAGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009509 GO:0009536 GO:0009975 GO:0009987 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0016853 GO:0016860 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0045436 GO:0046148 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00906 ko01100 ko01110 map00906 map01100 map01110

Pfam Domains

Protein Families

Lycopene_cycl

Protein Analysis

505

Amino Acids

56.48

Weight (kDa)

8.5

Isoelectric Point (pI)

42.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lycopene_cycl	PF05834	89 - 481	1.7e-148	Lycopene cyclase protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007985)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10230 AT3G10230
fragaria_vesca	FvH4_6g25130 FvH4_6g25130 FvH4_6g25130 FvH4_6g25130
malus_domestica	MD00G1049000.v1.1 MD00G1074700.v1.1
prunus_persica	Prupe.7G046100_v2.0.a1
pyrus_communis	pycom14g07340
rosa_chinensis	RchiOBHm_Chr2g0125001
rosa_laevigata	RLG00000018841
rosa_multiflora	Rmu_sc0000796.1_g000023 Rmu_sc0000796.1_g000027 Rmu_sc0008068.1_g000002 Rmu_sc0010311.1_g000002
rosa_roxburghii	Rroxscaffold_2G00118470 Rroxscaffold_2G00118770
rosa_rugosa	Rorug02G0254700
rosa_samantha	Rh2AG313400 Rh2BG321700 Rh2CG302900 Rh2DG338800
rosa_wichuraiana	Rw2G025310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	304
Acc65I	GGTACC	1 cut(s)	1167
AccB1I	GGYRCC	1 cut(s)	1167
AccB7I	CCANNNNNTGG	1 cut(s)	53
AccBSI	CCGCTC	1 cut(s)	1042
AccII	CGCG	1 cut(s)	1123
AciI	CCGC	9 cut(s)	282, 746, 963, 1035, 1040, 1123, 1136, 1209, 1348
AclWI	GGATC	3 cut(s)	492, 844, 857
AcoI	YGGCCR	2 cut(s)	960, 1455
AcsI	RAATTY	4 cut(s)	221, 401, 566, 1215
AfaI	GTAC	6 cut(s)	461, 693, 710, 1081, 1169, 1309
AfiI	CCNNNNNNNGG	7 cut(s)	53, 250, 251, 1034, 1106, 1242, 1353
AflII	CTTAAG	2 cut(s)	524, 1289
AgsI	TTSAA	9 cut(s)	221, 647, 681, 755, 814, 832, 1104, 1303, 1324
AjnI	CCWGG	5 cut(s)	429, 440, 715, 912, 925
Alw21I	GWGCWC	4 cut(s)	86, 181, 1053, 1098
Alw26I	GTCTC	3 cut(s)	135, 360, 1243
Alw44I	GTGCAC	1 cut(s)	1094
AlwI	GGATC	3 cut(s)	492, 844, 857
AoxI	GGCC	9 cut(s)	118, 286, 328, 371, 408, 923, 960, 1232, 1455
ApaLI	GTGCAC	1 cut(s)	1094
ApeKI	GCWGC	3 cut(s)	520, 538, 1133
ApoI	RAATTY	4 cut(s)	221, 401, 566, 1215
ArsI	GACNNNNNNTTYG	2 cut(s)	1456, 1488
Asp700I	GAANNNNTTC	1 cut(s)	1189
Asp718I	GGTACC	1 cut(s)	1167
AspLEI	GCGC	1 cut(s)	1123
AspS9I	GGNCC	5 cut(s)	265, 287, 372, 1037, 1233
AsuC2I	CCSGG	2 cut(s)	295, 1046
AsuHPI	GGTGA	1 cut(s)	563
AsuII	TTCGAA	1 cut(s)	89
AvaII	GGWCC	2 cut(s)	265, 1037
AxyI	CCTNAGG	1 cut(s)	122
BaeGI	GKGCMC	1 cut(s)	1098
BaeI	ACNNNNGTAYC	2 cut(s)	1159, 1192
BalI	TGGCCA	1 cut(s)	1457
BamHI	GGATCC	1 cut(s)	849
BanI	GGYRCC	1 cut(s)	1167
BanII	GRGCYC	2 cut(s)	86, 300
BauI	CACGAG	1 cut(s)	132
Bbv12I	GWGCWC	4 cut(s)	86, 181, 1053, 1098
BbvI	GCAGC	3 cut(s)	525, 532, 1145
BccI	CCATC	3 cut(s)	253, 952, 1084
BceAI	ACGGC	2 cut(s)	287, 691
BcgI	CGANNNNNNTGC	2 cut(s)	520, 554
BciT130I	CCWGG	5 cut(s)	431, 442, 717, 914, 927
BciVI	GTATCC	1 cut(s)	427
BclI	TGATCA	1 cut(s)	1485
BcnI	CCSGG	2 cut(s)	295, 1046
BcoDI	GTCTC	3 cut(s)	135, 360, 1243
BfaI	CTAG	5 cut(s)	168, 269, 966, 1340, 1437
BfrI	CTTAAG	2 cut(s)	524, 1289
BfuAI	ACCTGC	1 cut(s)	304
BfuI	GTATCC	1 cut(s)	427
BisI	GCNGC	5 cut(s)	521, 539, 963, 1134, 1137
BlsI	GCNGC	5 cut(s)	522, 540, 964, 1135, 1138
Bme1390I	CCNGG	7 cut(s)	295, 431, 442, 717, 914, 927, 1046
Bme18I	GGWCC	2 cut(s)	265, 1037
BmgT120I	GGNCC	5 cut(s)	265, 287, 372, 1037, 1233
BmiI	GGNNCC	3 cut(s)	851, 1140, 1169
BmrFI	CCNGG	7 cut(s)	295, 431, 442, 717, 914, 927, 1046
BmrI	ACTGGG	1 cut(s)	1116
BmsI	GCATC	4 cut(s)	655, 769, 771, 985
BmuI	ACTGGG	1 cut(s)	1116
BpmI	CTGGAG	2 cut(s)	206, 817
Bpu14I	TTCGAA	1 cut(s)	89
BpuMI	CCSGG	2 cut(s)	295, 1046
BsaI	GGTCTC	1 cut(s)	135
BsaJI	CCNNGG	5 cut(s)	303, 411, 912, 1171, 1458
BsaXI	ACNNNNNCTCC	4 cut(s)	98, 118, 128, 148
Bsc4I	CCNNNNNNNGG	7 cut(s)	53, 250, 251, 1034, 1106, 1242, 1353
Bse1I	ACTGG	3 cut(s)	676, 800, 1111
Bse21I	CCTNAGG	1 cut(s)	122
Bse3DI	GCAATG	3 cut(s)	8, 634, 876
BseBI	CCWGG	5 cut(s)	431, 442, 717, 914, 927
BseDI	CCNNGG	5 cut(s)	303, 411, 912, 1171, 1458
BseGI	GGATG	7 cut(s)	403, 760, 881, 963, 1015, 1023, 1095
BseLI	CCNNNNNNNGG	7 cut(s)	53, 250, 251, 1034, 1106, 1242, 1353
BseMI	GCAATG	3 cut(s)	8, 634, 876
BseMII	CTCAG	1 cut(s)	1070
BseNI	ACTGG	3 cut(s)	676, 800, 1111
BseRI	GAGGAG	5 cut(s)	119, 617, 1019, 1261, 1458
BseSI	GKGCMC	1 cut(s)	1098
BseXI	GCAGC	3 cut(s)	525, 532, 1145
Bsh1236I	CGCG	1 cut(s)	1123
BshFI	GGCC	9 cut(s)	120, 288, 330, 373, 410, 925, 962, 1234, 1457
BshNI	GGYRCC	1 cut(s)	1167
BsiHKAI	GWGCWC	4 cut(s)	86, 181, 1053, 1098
BsiSI	CCGG	3 cut(s)	197, 294, 1046
BslFI	GGGAC	1 cut(s)	1477
BslI	CCNNNNNNNGG	7 cut(s)	53, 250, 251, 1034, 1106, 1242, 1353
BsmAI	GTCTC	3 cut(s)	135, 360, 1243
BsmBI	CGTCTC	1 cut(s)	360
BsmFI	GGGAC	1 cut(s)	1477
BsnI	GGCC	9 cut(s)	120, 288, 330, 373, 410, 925, 962, 1234, 1457
Bso31I	GGTCTC	1 cut(s)	135
Bsp119I	TTCGAA	1 cut(s)	89
Bsp1286I	GDGCHC	5 cut(s)	86, 181, 300, 1053, 1098
Bsp1407I	TGTACA	2 cut(s)	459, 691
Bsp143I	GATC	4 cut(s)	484, 849, 1390, 1485
Bsp19I	CCATGG	1 cut(s)	411
BspACI	CCGC	9 cut(s)	282, 746, 963, 1035, 1040, 1123, 1136, 1209, 1348
BspANI	GGCC	9 cut(s)	120, 288, 330, 373, 410, 925, 962, 1234, 1457
BspCNI	CTCAG	1 cut(s)	1069
BspFNI	CGCG	1 cut(s)	1123
BspHI	TCATGA	1 cut(s)	598
BspLI	GGNNCC	3 cut(s)	851, 1140, 1169
BspMI	ACCTGC	1 cut(s)	304
BspPI	GGATC	3 cut(s)	492, 844, 857
BspQI	GCTCTTC	3 cut(s)	91, 186, 750
BspT104I	TTCGAA	1 cut(s)	89
BspT107I	GGYRCC	1 cut(s)	1167
BspTI	CTTAAG	2 cut(s)	524, 1289
BspTNI	GGTCTC	1 cut(s)	135
BsrBI	CCGCTC	1 cut(s)	1042
BsrDI	GCAATG	3 cut(s)	8, 634, 876
BsrGI	TGTACA	2 cut(s)	459, 691
BsrI	ACTGG	3 cut(s)	676, 800, 1111
BssECI	CCNNGG	5 cut(s)	303, 411, 912, 1171, 1458
BssMI	GATC	4 cut(s)	484, 849, 1390, 1485
BssSI	CACGAG	1 cut(s)	132
BssT1I	CCWWGG	3 cut(s)	411, 1171, 1458
Bst2BI	CACGAG	1 cut(s)	132
Bst2UI	CCWGG	5 cut(s)	431, 442, 717, 914, 927
Bst4CI	ACNGT	6 cut(s)	560, 618, 635, 696, 1380, 1416
Bst6I	CTCTTC	3 cut(s)	91, 186, 750
BstAFI	CTTAAG	2 cut(s)	524, 1289
BstAUI	TGTACA	2 cut(s)	459, 691
BstBI	TTCGAA	1 cut(s)	89
BstC8I	GCNNGC	3 cut(s)	33, 300, 328
BstDEI	CTNAG	3 cut(s)	122, 588, 1056
BstDSI	CCRYGG	2 cut(s)	303, 411
BstEII	GGTNACC	1 cut(s)	719
BstF5I	GGATG	7 cut(s)	403, 760, 881, 963, 1015, 1023, 1095
BstFNI	CGCG	1 cut(s)	1123
BstHHI	GCGC	1 cut(s)	1123
BstKTI	GATC	4 cut(s)	487, 852, 1393, 1488
BstMAI	GTCTC	3 cut(s)	135, 360, 1243
BstMBI	GATC	4 cut(s)	484, 849, 1390, 1485
BstMWI	GCNNNNNNNGC	5 cut(s)	19, 28, 299, 1048, 1433
BstNI	CCWGG	5 cut(s)	431, 442, 717, 914, 927
BstPI	GGTNACC	1 cut(s)	719
BstSCI	CCNGG	7 cut(s)	293, 429, 440, 715, 912, 925, 1044
BstSLI	GKGCMC	1 cut(s)	1098
BstUI	CGCG	1 cut(s)	1123
BstV1I	GCAGC	3 cut(s)	525, 532, 1145
BstX2I	RGATCY	2 cut(s)	484, 849
BstYI	RGATCY	2 cut(s)	484, 849
Bsu36I	CCTNAGG	1 cut(s)	122
BsuI	GTATCC	1 cut(s)	427
BsuRI	GGCC	9 cut(s)	120, 288, 330, 373, 410, 925, 962, 1234, 1457
BtgI	CCRYGG	2 cut(s)	303, 411
BtsCI	GGATG	7 cut(s)	403, 760, 881, 963, 1015, 1023, 1095
BtsI	GCAGTG	1 cut(s)	181
BtsIMutI	CAGTG	3 cut(s)	181, 614, 1412
BveI	ACCTGC	1 cut(s)	304
Cac8I	GCNNGC	3 cut(s)	33, 300, 328
CciI	TCATGA	1 cut(s)	598
CfoI	GCGC	1 cut(s)	1123
Cfr13I	GGNCC	5 cut(s)	265, 287, 372, 1037, 1233
CpoI	CGGWCCG	1 cut(s)	1037
CsiI	ACCWGGT	1 cut(s)	440
Csp6I	GTAC	6 cut(s)	460, 692, 709, 1080, 1168, 1308
CspI	CGGWCCG	1 cut(s)	1037
CviAII	CATG	6 cut(s)	53, 412, 599, 937, 1358, 1424
CviQI	GTAC	6 cut(s)	460, 692, 709, 1080, 1168, 1308
DdeI	CTNAG	3 cut(s)	122, 588, 1056
DpnI	GATC	4 cut(s)	486, 851, 1392, 1487
DpnII	GATC	4 cut(s)	484, 849, 1390, 1485
EaeI	YGGCCR	2 cut(s)	960, 1455
Eam1104I	CTCTTC	3 cut(s)	91, 186, 750
EarI	CTCTTC	3 cut(s)	91, 186, 750
EciI	GGCGGA	2 cut(s)	761, 1050
Ecl136II	GAGCTC	1 cut(s)	84
Eco130I	CCWWGG	3 cut(s)	411, 1171, 1458
Eco147I	AGGCCT	1 cut(s)	330
Eco24I	GRGCYC	2 cut(s)	86, 300
Eco31I	GGTCTC	1 cut(s)	135
Eco32I	GATATC	1 cut(s)	946
Eco47I	GGWCC	2 cut(s)	265, 1037
Eco53kI	GAGCTC	1 cut(s)	84
Eco81I	CCTNAGG	1 cut(s)	122
Eco91I	GGTNACC	1 cut(s)	719
EcoICRI	GAGCTC	1 cut(s)	84
EcoO65I	GGTNACC	1 cut(s)	719
EcoRII	CCWGG	5 cut(s)	429, 440, 715, 912, 925
EcoRV	GATATC	1 cut(s)	946
EcoT14I	CCWWGG	3 cut(s)	411, 1171, 1458
EcoT22I	ATGCAT	1 cut(s)	551
EcoT38I	GRGCYC	2 cut(s)	86, 300
ErhI	CCWWGG	3 cut(s)	411, 1171, 1458
Esp3I	CGTCTC	1 cut(s)	360
FaeI	CATG	6 cut(s)	56, 415, 602, 940, 1361, 1427
FaqI	GGGAC	1 cut(s)	1477
FatI	CATG	6 cut(s)	52, 411, 598, 936, 1357, 1423
FauI	CCCGC	1 cut(s)	1355
FbaI	TGATCA	1 cut(s)	1485
Fnu4HI	GCNGC	5 cut(s)	521, 539, 963, 1134, 1137
FokI	GGATG	7 cut(s)	410, 747, 868, 970, 1010, 1022, 1102
FriOI	GRGCYC	2 cut(s)	86, 300
Fsp4HI	GCNGC	5 cut(s)	521, 539, 963, 1134, 1137
FspBI	CTAG	5 cut(s)	168, 269, 966, 1340, 1437
GlaI	GCGC	1 cut(s)	1122
GluI	GCNGC	5 cut(s)	521, 539, 963, 1134, 1137
GsuI	CTGGAG	2 cut(s)	206, 817
HaeIII	GGCC	9 cut(s)	120, 288, 330, 373, 410, 925, 962, 1234, 1457
HapII	CCGG	3 cut(s)	197, 294, 1046
HhaI	GCGC	1 cut(s)	1123
Hin1II	CATG	6 cut(s)	56, 415, 602, 940, 1361, 1427
Hin6I	GCGC	1 cut(s)	1121
HinP1I	GCGC	1 cut(s)	1121
HincII	GTYRAC	1 cut(s)	621
HindII	GTYRAC	1 cut(s)	621
HindIII	AAGCTT	4 cut(s)	29, 92, 648, 1292
HinfI	GANTC	6 cut(s)	473, 803, 1071, 1126, 1362, 1465
HpaII	CCGG	3 cut(s)	197, 294, 1046
HphI	GGTGA	1 cut(s)	563
Hpy166II	GTNNAC	5 cut(s)	265, 460, 621, 932, 1096
Hpy188I	TCNGA	6 cut(s)	64, 322, 516, 1059, 1180, 1314
Hpy188III	TCNNGA	9 cut(s)	185, 218, 599, 662, 681, 899, 1194, 1374, 1388
Hpy8I	GTNNAC	5 cut(s)	265, 460, 621, 932, 1096
HpyAV	CCTTC	5 cut(s)	202, 475, 498, 826, 1110
HpyCH4III	ACNGT	6 cut(s)	560, 618, 635, 696, 1380, 1416
HpyF10VI	GCNNNNNNNGC	5 cut(s)	19, 28, 299, 1048, 1433
HpyF3I	CTNAG	3 cut(s)	122, 588, 1056
Hsp92II	CATG	6 cut(s)	56, 415, 602, 940, 1361, 1427
HspAI	GCGC	1 cut(s)	1121
KpnI	GGTACC	1 cut(s)	1171
Ksp22I	TGATCA	1 cut(s)	1485
Kzo9I	GATC	4 cut(s)	484, 849, 1390, 1485
LguI	GCTCTTC	3 cut(s)	91, 186, 750
LmnI	GCTCC	4 cut(s)	187, 1047, 1056, 1144
Lsp1109I	GCAGC	3 cut(s)	525, 532, 1145
LweI	GCATC	4 cut(s)	655, 769, 771, 985
MabI	ACCWGGT	1 cut(s)	440
MaeI	CTAG	5 cut(s)	168, 269, 966, 1340, 1437
MaeIII	GTNAC	3 cut(s)	583, 637, 719
MalI	GATC	4 cut(s)	486, 851, 1392, 1487
MbiI	CCGCTC	1 cut(s)	1042
MboI	GATC	4 cut(s)	484, 849, 1390, 1485
MboII	GAAGA	7 cut(s)	78, 173, 490, 767, 914, 1255, 1376
MfeI	CAATTG	1 cut(s)	345
MflI	RGATCY	2 cut(s)	484, 849
MhlI	GDGCHC	5 cut(s)	86, 181, 300, 1053, 1098
MlsI	TGGCCA	1 cut(s)	1457
MluNI	TGGCCA	1 cut(s)	1457
MlyI	GAGTC	2 cut(s)	1120, 1459
MmeI	TCCRAC	2 cut(s)	909, 1048
Mox20I	TGGCCA	1 cut(s)	1457
Mph1103I	ATGCAT	1 cut(s)	551
MroXI	GAANNNNTTC	1 cut(s)	1189
MscI	TGGCCA	1 cut(s)	1457
MslI	CAYNNNNRTG	2 cut(s)	416, 1028
Msp20I	TGGCCA	1 cut(s)	1457
MspA1I	CMGCKG	1 cut(s)	1136
MspCI	CTTAAG	2 cut(s)	524, 1289
MspI	CCGG	3 cut(s)	197, 294, 1046
MspR9I	CCNGG	7 cut(s)	295, 431, 442, 717, 914, 927, 1046
MunI	CAATTG	1 cut(s)	345
MvaI	CCWGG	5 cut(s)	431, 442, 717, 914, 927
MvnI	CGCG	1 cut(s)	1123
MwoI	GCNNNNNNNGC	5 cut(s)	19, 28, 299, 1048, 1433
NciI	CCSGG	2 cut(s)	295, 1046
NcoI	CCATGG	1 cut(s)	411
NdeII	GATC	4 cut(s)	484, 849, 1390, 1485
NlaIII	CATG	6 cut(s)	56, 415, 602, 940, 1361, 1427
NlaIV	GGNNCC	3 cut(s)	851, 1140, 1169
NmeAIII	GCCGAG	1 cut(s)	901
NmuCI	GTSAC	1 cut(s)	637
NsiI	ATGCAT	1 cut(s)	551
NspV	TTCGAA	1 cut(s)	89
PagI	TCATGA	1 cut(s)	598
PceI	AGGCCT	1 cut(s)	330
PciSI	GCTCTTC	3 cut(s)	91, 186, 750
PcsI	WCGNNNNNNNCGW	1 cut(s)	86
PdmI	GAANNNNTTC	1 cut(s)	1189
PfeI	GAWTC	4 cut(s)	473, 803, 1071, 1362
PflFI	GACNNNGTC	1 cut(s)	635
PflMI	CCANNNNNTGG	1 cut(s)	53
PkrI	GCNGC	5 cut(s)	522, 540, 964, 1135, 1138
PleI	GAGTC	2 cut(s)	1120, 1459
PpsI	GAGTC	2 cut(s)	1120, 1459
Psp124BI	GAGCTC	1 cut(s)	86
Psp6I	CCWGG	5 cut(s)	429, 440, 715, 912, 925
PspEI	GGTNACC	1 cut(s)	719
PspGI	CCWGG	5 cut(s)	429, 440, 715, 912, 925
PspN4I	GGNNCC	3 cut(s)	851, 1140, 1169
PspPI	GGNCC	5 cut(s)	265, 287, 372, 1037, 1233
PsuI	RGATCY	2 cut(s)	484, 849
PsyI	GACNNNGTC	1 cut(s)	635
RsaI	GTAC	6 cut(s)	461, 693, 710, 1081, 1169, 1309
RsaNI	GTAC	6 cut(s)	460, 692, 709, 1080, 1168, 1308
RseI	CAYNNNNRTG	2 cut(s)	416, 1028
Rsr2I	CGGWCCG	1 cut(s)	1037
RsrII	CGGWCCG	1 cut(s)	1037
SacI	GAGCTC	1 cut(s)	86
SapI	GCTCTTC	3 cut(s)	91, 186, 750
SatI	GCNGC	5 cut(s)	521, 539, 963, 1134, 1137
Sau3AI	GATC	4 cut(s)	484, 849, 1390, 1485
Sau96I	GGNCC	5 cut(s)	265, 287, 372, 1037, 1233
SchI	GAGTC	2 cut(s)	1120, 1459
ScrFI	CCNGG	7 cut(s)	295, 431, 442, 717, 914, 927, 1046
SduI	GDGCHC	5 cut(s)	86, 181, 300, 1053, 1098
SexAI	ACCWGGT	1 cut(s)	440
SfaNI	GCATC	4 cut(s)	655, 769, 771, 985
SfuI	TTCGAA	1 cut(s)	89
SinI	GGWCC	2 cut(s)	265, 1037
SmiMI	CAYNNNNRTG	2 cut(s)	416, 1028
SmlI	CTYRAG	2 cut(s)	524, 1289
SmoI	CTYRAG	2 cut(s)	524, 1289
SseBI	AGGCCT	1 cut(s)	330
SsiI	CCGC	9 cut(s)	282, 746, 963, 1035, 1040, 1123, 1136, 1209, 1348
SspMI	CTAG	5 cut(s)	168, 269, 966, 1340, 1437
SstI	GAGCTC	1 cut(s)	86
StuI	AGGCCT	1 cut(s)	330
StyD4I	CCNGG	7 cut(s)	293, 429, 440, 715, 912, 925, 1044
StyI	CCWWGG	3 cut(s)	411, 1171, 1458
TaaI	ACNGT	6 cut(s)	560, 618, 635, 696, 1380, 1416
TaqI	TCGA	8 cut(s)	80, 89, 476, 530, 663, 825, 900, 1375
TatI	WGTACW	2 cut(s)	459, 691
TauI	GCSGC	2 cut(s)	965, 1139
TfiI	GAWTC	4 cut(s)	473, 803, 1071, 1362
TscAI	CASTG	3 cut(s)	181, 621, 1419
TseFI	GTSAC	1 cut(s)	637
TseI	GCWGC	3 cut(s)	520, 538, 1133
Tsp45I	GTSAC	1 cut(s)	637
TspDTI	ATGAA	6 cut(s)	41, 414, 587, 870, 953, 1215
TspRI	CASTG	3 cut(s)	181, 621, 1419
Tth111I	GACNNNGTC	1 cut(s)	635
Van91I	CCANNNNNTGG	1 cut(s)	53
Vha464I	CTTAAG	2 cut(s)	524, 1289
VneI	GTGCAC	1 cut(s)	1094
VpaK11BI	GGWCC	2 cut(s)	265, 1037
XapI	RAATTY	4 cut(s)	221, 401, 566, 1215
XcmI	CCANNNNNNNNNTGG	1 cut(s)	731
XmnI	GAANNNNTTC	1 cut(s)	1189
XspI	CTAG	5 cut(s)	168, 269, 966, 1340, 1437
Zsp2I	ATGCAT	1 cut(s)	551

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.