Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008947

Physical Location & Seq

Genomic Coordinates Reverse (-)

3183403 .. 3185427

Gene Structure 2025 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G10290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGTCGTCCCATGCTCGAGGTAAGGAGCTAATTCCTCTCCTGTCTTTCTCCCACCAAAAAAAACAACCAAATCTCTCGATCTCATCGACGACGAAGATGAACAAGAAGAACCCAGATCAGAAATCCGACATGTCGTCTTCTTCATCTTCTCCGAAGAAACAAACCCTCTTCATATCATCCTTAATCATTCTCTGGTACACCTCCAACATCGGTGTTCTTCTCCTCAACAAGTTCCTCCTCTCCAATTACGGATTCAAATTCCCTATTTTCCTCACAATGTGTCACATGTCCGCTTGCGCTATCCTCAGCTACGTCTCCATCGTCTTCCTCAAGCTCGTCCCTCTCCAATACCTCAAATCTCGTTCTCAGTTTCTCAAGGTTGCGACTCTCAGCATTGTCTTTTGTGCCTCTGTCGTCGGTGGAAACATCTCCCTTCGTTATCTCCCTGTCTCCTTTAATCAAGCCGTTGGTGCTACGACGCCGTTTTTCACTGCACTCTTCGCTTATATCATGACCTTTAAGAGAGAAGCTTGGGTCACTTATGGCGCTCTCGTCCCCGTTGTTACCGGTGTCGTTATCGCCAGTGGGGGTGAACCAGGTTTTCACTGGTTTGGATTCATTATGTGCATTAGTGCTACTGCAGCAAGAGCTTTTAAATCTGTTCTTCAAGGCATCTTACTTTCTTCCGAGGGAGAAAGGTTGAATTCGATGAATTTGATGCTGTACATGTCTCCAATAGCCGTCATTGCTCTTCTGCCTGTCACAATTTTTATGGAGCCGGACGTGATGAGTGTGACACTAACACTCGGAAGACAACATAAGTACATGTATATACTTCTGCTGGTTAACTCTGTAATGGCTTATTCAGCCAACTTGTTAAACTTTCTGGTTACCAAGCACACAAGCGCACTTACCCTGCAGGTCCTTGGAAATGCTAAAGGAGCGGTTGCAGTTGTGATATCGATCCTGCTTTTCCGAAACCCGGTAACGGTGATGGGAATTGGCGGGTACAGTATAACCGTTCTCGGGGTGGTTGCTTATGGAGAGACTAAACGCAGGTTTAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0007275 GO:0008150 GO:0008152 GO:0009791 GO:0009987 GO:0010154 GO:0010191 GO:0010214 GO:0012505 GO:0015780 GO:0015931 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048359 GO:0048608 GO:0048731 GO:0048856 GO:0051179 GO:0051234 GO:0055085 GO:0061458 GO:0071702 GO:0071705 GO:1901264

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

355

Amino Acids

38.95

Weight (kDa)

9.99

Isoelectric Point (pI)

46.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UAA	PF08449	55 - 348	1e-09	UAA transporter family
TPT	PF03151	58 - 347	1.5e-43	Triose-phosphate Transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008947)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10290 AT5G04160
fragaria_vesca	FvH4_6g24460 FvH4_6g24460 FvH4_6g24460 FvH4_6g24460 FvH4_6g24460
malus_domestica	MD12G1081800.v1.1 MD14G1077100.v1.1
prunus_persica	Prupe.7G054100_v2.0.a1 Prupe.7G054100_v2.0.a1
pyrus_communis	pycom12g06780 pycom14g06570
rosa_chinensis	RchiOBHm_Chr3g0483441
rosa_laevigata	RLG00000023279
rosa_multiflora	Rmu_sc0007722.1_g000006 Rmu_sc0007793.1_g000019
rosa_roxburghii	Rroxscaffold_6G00398300
rosa_rugosa	Rorug03G0205900
rosa_samantha	Rh3BG291800 Rh3CG288800
rosa_wichuraiana	Rw3G023000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	910, 1047
AccBSI	CCGCTC	1 cut(s)	944
AciI	CCGC	3 cut(s)	291, 944, 1005
AclWI	GGATC	1 cut(s)	958
AcsI	RAATTY	3 cut(s)	257, 703, 712
AcyI	GRCGYC	1 cut(s)	479
AdeI	CACNNNGTG	1 cut(s)	279
AfaI	GTAC	4 cut(s)	197, 725, 824, 1010
AfiI	CCNNNNNNNGG	3 cut(s)	982, 988, 1026
AflIII	ACRYGT	4 cut(s)	129, 285, 726, 825
AgeI	ACCGGT	1 cut(s)	566
AgsI	TTSAA	3 cut(s)	256, 668, 703
AhdI	GACNNNNNGTC	1 cut(s)	133
AjiI	CACGTC	1 cut(s)	784
AjnI	CCWGG	1 cut(s)	595
AjuI	GAANNNNNNNTTGG	2 cut(s)	236, 268
AluBI	AGCT	5 cut(s)	28, 309, 334, 530, 650
AluI	AGCT	5 cut(s)	28, 309, 334, 530, 650
Alw26I	GTCTC	4 cut(s)	319, 454, 735, 1040
AlwI	GGATC	1 cut(s)	958
Ama87I	CYCGRG	2 cut(s)	15, 1025
ApeKI	GCWGC	1 cut(s)	641
ApoI	RAATTY	3 cut(s)	257, 703, 712
AsiGI	ACCGGT	1 cut(s)	566
AspLEI	GCGC	3 cut(s)	299, 548, 908
AspS9I	GGNCC	1 cut(s)	922
AsuC2I	CCSGG	1 cut(s)	983
AsuHPI	GGTGA	2 cut(s)	602, 1003
AvaI	CYCGRG	2 cut(s)	15, 1025
AvaII	GGWCC	1 cut(s)	922
BbsI	GAAGAC	3 cut(s)	129, 316, 817
BbvCI	CCTCAGC	1 cut(s)	305
BbvI	GCAGC	1 cut(s)	653
BccI	CCATC	2 cut(s)	326, 988
BceAI	ACGGC	3 cut(s)	449, 466, 725
BciT130I	CCWGG	1 cut(s)	597
BcnI	CCSGG	1 cut(s)	983
BcoDI	GTCTC	4 cut(s)	319, 454, 735, 1040
BfmI	CTRYAG	2 cut(s)	639, 917
BfoI	RGCGCY	1 cut(s)	549
BfuAI	ACCTGC	2 cut(s)	910, 1047
BisI	GCNGC	1 cut(s)	642
BlsI	GCNGC	1 cut(s)	643
Bme1390I	CCNGG	2 cut(s)	597, 983
Bme18I	GGWCC	1 cut(s)	922
BmeRI	GACNNNNNGTC	1 cut(s)	133
BmeT110I	CYCGRG	2 cut(s)	15, 1025
BmgBI	CACGTC	1 cut(s)	784
BmgT120I	GGNCC	1 cut(s)	922
BmiI	GGNNCC	1 cut(s)	777
BmrFI	CCNGG	2 cut(s)	597, 983
BmsI	GCATC	2 cut(s)	681, 708
BpiI	GAAGAC	3 cut(s)	129, 316, 817
Bpu10I	CCTNAGC	1 cut(s)	305
BpuEI	CTTGAG	2 cut(s)	314, 359
BpuMI	CCSGG	1 cut(s)	983
Bsa29I	ATCGAT	1 cut(s)	962
BsaBI	GATNNNNATC	1 cut(s)	962
BsaHI	GRCGYC	1 cut(s)	479
BsaJI	CCNNGG	2 cut(s)	687, 925
BsaWI	WCCGGW	1 cut(s)	566
Bsc4I	CCNNNNNNNGG	3 cut(s)	982, 988, 1026
Bse118I	RCCGGY	1 cut(s)	566
Bse1I	ACTGG	2 cut(s)	582, 611
Bse3DI	GCAATG	1 cut(s)	744
Bse8I	GATNNNNATC	1 cut(s)	962
BseBI	CCWGG	1 cut(s)	597
BseCI	ATCGAT	1 cut(s)	962
BseDI	CCNNGG	2 cut(s)	687, 925
BseGI	GGATG	1 cut(s)	176
BseJI	GATNNNNATC	1 cut(s)	962
BseLI	CCNNNNNNNGG	3 cut(s)	982, 988, 1026
BseMI	GCAATG	1 cut(s)	744
BseMII	CTCAG	3 cut(s)	319, 380, 403
BseNI	ACTGG	2 cut(s)	582, 611
BseRI	GAGGAG	2 cut(s)	212, 227
BseXI	GCAGC	1 cut(s)	653
BsgI	GTGCAG	1 cut(s)	477
BshTI	ACCGGT	1 cut(s)	566
BshVI	ATCGAT	1 cut(s)	962
BsiHKCI	CYCGRG	2 cut(s)	15, 1025
BsiSI	CCGG	3 cut(s)	567, 779, 983
BslFI	GGGAC	2 cut(s)	323, 539
BslI	CCNNNNNNNGG	3 cut(s)	982, 988, 1026
BsmAI	GTCTC	4 cut(s)	319, 454, 735, 1040
BsmBI	CGTCTC	1 cut(s)	319
BsmFI	GGGAC	2 cut(s)	323, 539
BsoBI	CYCGRG	2 cut(s)	15, 1025
Bsp1407I	TGTACA	1 cut(s)	723
Bsp143I	GATC	3 cut(s)	78, 115, 963
BspACI	CCGC	3 cut(s)	291, 944, 1005
BspCNI	CTCAG	3 cut(s)	318, 379, 402
BspDI	ATCGAT	1 cut(s)	962
BspHI	TCATGA	1 cut(s)	510
BspLI	GGNNCC	1 cut(s)	777
BspMAI	CTGCAG	2 cut(s)	643, 921
BspMI	ACCTGC	2 cut(s)	910, 1047
BspPI	GGATC	1 cut(s)	958
BspQI	GCTCTTC	1 cut(s)	756
BsrBI	CCGCTC	1 cut(s)	944
BsrDI	GCAATG	1 cut(s)	744
BsrFI	RCCGGY	1 cut(s)	566
BsrGI	TGTACA	1 cut(s)	723
BsrI	ACTGG	2 cut(s)	582, 611
BssAI	RCCGGY	1 cut(s)	566
BssECI	CCNNGG	2 cut(s)	687, 925
BssMI	GATC	3 cut(s)	78, 115, 963
BssNI	GRCGYC	1 cut(s)	479
BssT1I	CCWWGG	1 cut(s)	925
Bst2UI	CCWGG	1 cut(s)	597
Bst4CI	ACNGT	3 cut(s)	991, 1013, 1021
Bst6I	CTCTTC	3 cut(s)	173, 503, 756
BstACI	GRCGYC	1 cut(s)	479
BstAUI	TGTACA	1 cut(s)	723
BstC8I	GCNNGC	1 cut(s)	295
BstDEI	CTNAG	3 cut(s)	305, 366, 389
BstEII	GGTNACC	1 cut(s)	889
BstF5I	GGATG	1 cut(s)	176
BstH2I	RGCGCY	1 cut(s)	549
BstHHI	GCGC	3 cut(s)	299, 548, 908
BstKTI	GATC	3 cut(s)	81, 118, 966
BstMAI	GTCTC	4 cut(s)	319, 454, 735, 1040
BstMBI	GATC	3 cut(s)	78, 115, 963
BstMWI	GCNNNNNNNGC	7 cut(s)	470, 500, 641, 647, 746, 866, 941
BstNI	CCWGG	1 cut(s)	597
BstNSI	RCATGY	4 cut(s)	133, 289, 730, 829
BstPI	GGTNACC	1 cut(s)	889
BstSCI	CCNGG	2 cut(s)	595, 981
BstSFI	CTRYAG	2 cut(s)	639, 917
BstV1I	GCAGC	1 cut(s)	653
BstV2I	GAAGAC	3 cut(s)	129, 316, 817
Bsu15I	ATCGAT	1 cut(s)	962
BsuTUI	ATCGAT	1 cut(s)	962
BtrI	CACGTC	1 cut(s)	784
BtsCI	GGATG	1 cut(s)	176
BtsI	GCAGTG	1 cut(s)	489
BtsIMutI	CAGTG	3 cut(s)	489, 589, 604
BveI	ACCTGC	2 cut(s)	910, 1047
Cac8I	GCNNGC	1 cut(s)	295
CciI	TCATGA	1 cut(s)	510
CfoI	GCGC	3 cut(s)	299, 548, 908
Cfr10I	RCCGGY	1 cut(s)	566
Cfr13I	GGNCC	1 cut(s)	922
ClaI	ATCGAT	1 cut(s)	962
CseI	GACGC	1 cut(s)	487
CsiI	ACCWGGT	1 cut(s)	595
Csp6I	GTAC	4 cut(s)	196, 724, 823, 1009
CspAI	ACCGGT	1 cut(s)	566
CviAII	CATG	6 cut(s)	11, 130, 286, 511, 727, 826
CviQI	GTAC	4 cut(s)	196, 724, 823, 1009
DdeI	CTNAG	3 cut(s)	305, 366, 389
DpnI	GATC	3 cut(s)	80, 117, 965
DpnII	GATC	3 cut(s)	78, 115, 963
DraI	TTTAAA	1 cut(s)	655
DraIII	CACNNNGTG	1 cut(s)	279
DriI	GACNNNNNGTC	1 cut(s)	133
Eam1104I	CTCTTC	3 cut(s)	173, 503, 756
Eam1105I	GACNNNNNGTC	1 cut(s)	133
EarI	CTCTTC	3 cut(s)	173, 503, 756
Eco130I	CCWWGG	1 cut(s)	925
Eco32I	GATATC	1 cut(s)	960
Eco47I	GGWCC	1 cut(s)	922
Eco88I	CYCGRG	2 cut(s)	15, 1025
Eco91I	GGTNACC	1 cut(s)	889
EcoO109I	RGGNCCY	1 cut(s)	922
EcoO65I	GGTNACC	1 cut(s)	889
EcoRI	GAATTC	1 cut(s)	703
EcoRII	CCWGG	1 cut(s)	595
EcoRV	GATATC	1 cut(s)	960
EcoT14I	CCWWGG	1 cut(s)	925
ErhI	CCWWGG	1 cut(s)	925
Esp3I	CGTCTC	1 cut(s)	319
FaeI	CATG	6 cut(s)	14, 133, 289, 514, 730, 829
FaqI	GGGAC	2 cut(s)	323, 539
FatI	CATG	6 cut(s)	10, 129, 285, 510, 726, 825
FauI	CCCGC	1 cut(s)	998
Fnu4HI	GCNGC	1 cut(s)	642
FokI	GGATG	1 cut(s)	163
Fsp4HI	GCNGC	1 cut(s)	642
GlaI	GCGC	3 cut(s)	298, 547, 907
GluI	GCNGC	1 cut(s)	642
HaeII	RGCGCY	1 cut(s)	549
HapII	CCGG	3 cut(s)	567, 779, 983
HgaI	GACGC	1 cut(s)	487
HhaI	GCGC	3 cut(s)	299, 548, 908
Hin1I	GRCGYC	1 cut(s)	479
Hin1II	CATG	6 cut(s)	14, 133, 289, 514, 730, 829
Hin6I	GCGC	3 cut(s)	297, 546, 906
HinP1I	GCGC	3 cut(s)	297, 546, 906
HincII	GTYRAC	1 cut(s)	847
HindII	GTYRAC	1 cut(s)	847
HindIII	AAGCTT	1 cut(s)	528
HinfI	GANTC	3 cut(s)	252, 385, 615
HpaI	GTTAAC	1 cut(s)	847
HpaII	CCGG	3 cut(s)	567, 779, 983
HphI	GGTGA	2 cut(s)	602, 1003
Hpy166II	GTNNAC	3 cut(s)	198, 593, 847
Hpy188I	TCNGA	6 cut(s)	120, 127, 153, 688, 809, 977
Hpy188III	TCNNGA	2 cut(s)	76, 511
Hpy8I	GTNNAC	3 cut(s)	198, 593, 847
Hpy99I	CGWCG	4 cut(s)	91, 94, 419, 481
HpyAV	CCTTC	1 cut(s)	443
HpyCH4III	ACNGT	3 cut(s)	991, 1013, 1021
HpyCH4IV	ACGT	2 cut(s)	312, 783
HpyCH4V	TGCA	5 cut(s)	494, 627, 641, 919, 950
HpyF10VI	GCNNNNNNNGC	7 cut(s)	470, 500, 641, 647, 746, 866, 941
HpyF3I	CTNAG	3 cut(s)	305, 366, 389
HpySE526I	ACGT	2 cut(s)	312, 783
Hsp92I	GRCGYC	1 cut(s)	479
Hsp92II	CATG	6 cut(s)	14, 133, 289, 514, 730, 829
HspAI	GCGC	3 cut(s)	297, 546, 906
KspAI	GTTAAC	1 cut(s)	847
Kzo9I	GATC	3 cut(s)	78, 115, 963
LguI	GCTCTTC	1 cut(s)	756
LmnI	GCTCC	3 cut(s)	25, 775, 941
Lsp1109I	GCAGC	1 cut(s)	653
LweI	GCATC	2 cut(s)	681, 708
MabI	ACCWGGT	1 cut(s)	595
MaeII	ACGT	2 cut(s)	312, 783
MaeIII	GTNAC	7 cut(s)	281, 535, 562, 760, 793, 889, 985
MalI	GATC	3 cut(s)	80, 117, 965
MbiI	CCGCTC	1 cut(s)	944
MboI	GATC	3 cut(s)	78, 115, 963
MluCI	AATT	7 cut(s)	30, 244, 257, 703, 712, 765, 999
MlyI	GAGTC	1 cut(s)	379
MmeI	TCCRAC	2 cut(s)	150, 228
MseI	TTAA	6 cut(s)	182, 456, 519, 654, 846, 878
MspI	CCGG	3 cut(s)	567, 779, 983
MspR9I	CCNGG	2 cut(s)	597, 983
MvaI	CCWGG	1 cut(s)	597
MwoI	GCNNNNNNNGC	7 cut(s)	470, 500, 641, 647, 746, 866, 941
NciI	CCSGG	1 cut(s)	983
NdeII	GATC	3 cut(s)	78, 115, 963
NlaIII	CATG	6 cut(s)	14, 133, 289, 514, 730, 829
NlaIV	GGNNCC	1 cut(s)	777
NmuCI	GTSAC	4 cut(s)	281, 535, 760, 793
NspI	RCATGY	4 cut(s)	133, 289, 730, 829
PaeR7I	CTCGAG	1 cut(s)	15
PagI	TCATGA	1 cut(s)	510
PciI	ACATGT	4 cut(s)	129, 285, 726, 825
PciSI	GCTCTTC	1 cut(s)	756
PcsI	WCGNNNNNNNCGW	2 cut(s)	83, 318
PfeI	GAWTC	2 cut(s)	252, 615
PinAI	ACCGGT	1 cut(s)	566
PkrI	GCNGC	1 cut(s)	643
PleI	GAGTC	1 cut(s)	379
PpsI	GAGTC	1 cut(s)	379
PpuMI	RGGWCCY	1 cut(s)	922
PscI	ACATGT	4 cut(s)	129, 285, 726, 825
Psp5II	RGGWCCY	1 cut(s)	922
Psp6I	CCWGG	1 cut(s)	595
PspEI	GGTNACC	1 cut(s)	889
PspGI	CCWGG	1 cut(s)	595
PspN4I	GGNNCC	1 cut(s)	777
PspPI	GGNCC	1 cut(s)	922
PspPPI	RGGWCCY	1 cut(s)	922
PspXI	VCTCGAGB	1 cut(s)	15
PstI	CTGCAG	2 cut(s)	643, 921
RsaI	GTAC	4 cut(s)	197, 725, 824, 1010
RsaNI	GTAC	4 cut(s)	196, 724, 823, 1009
SapI	GCTCTTC	1 cut(s)	756
SaqAI	TTAA	6 cut(s)	182, 456, 519, 654, 846, 878
SatI	GCNGC	1 cut(s)	642
Sau3AI	GATC	3 cut(s)	78, 115, 963
Sau96I	GGNCC	1 cut(s)	922
SbfI	CCTGCAGG	1 cut(s)	921
SchI	GAGTC	1 cut(s)	379
ScrFI	CCNGG	2 cut(s)	597, 983
SdaI	CCTGCAGG	1 cut(s)	921
SexAI	ACCWGGT	1 cut(s)	595
SfaNI	GCATC	2 cut(s)	681, 708
SfcI	CTRYAG	2 cut(s)	639, 917
Sfr274I	CTCGAG	1 cut(s)	15
SinI	GGWCC	1 cut(s)	922
SlaI	CTCGAG	1 cut(s)	15
SmlI	CTYRAG	3 cut(s)	15, 329, 374
SmoI	CTYRAG	3 cut(s)	15, 329, 374
Sse8387I	CCTGCAGG	1 cut(s)	921
Sse9I	AATT	7 cut(s)	30, 244, 257, 703, 712, 765, 999
SsiI	CCGC	3 cut(s)	291, 944, 1005
StyD4I	CCNGG	2 cut(s)	595, 981
StyI	CCWWGG	1 cut(s)	925
TaaI	ACNGT	3 cut(s)	991, 1013, 1021
TaiI	ACGT	2 cut(s)	315, 786
TaqI	TCGA	5 cut(s)	16, 77, 86, 707, 962
TasI	AATT	7 cut(s)	30, 244, 257, 703, 712, 765, 999
TatI	WGTACW	2 cut(s)	723, 822
TfiI	GAWTC	2 cut(s)	252, 615
Tru1I	TTAA	6 cut(s)	182, 456, 519, 654, 846, 878
Tru9I	TTAA	6 cut(s)	182, 456, 519, 654, 846, 878
TscAI	CASTG	3 cut(s)	496, 589, 611
TseFI	GTSAC	4 cut(s)	281, 535, 760, 793
TseI	GCWGC	1 cut(s)	641
Tsp45I	GTSAC	4 cut(s)	281, 535, 760, 793
TspDTI	ATGAA	5 cut(s)	113, 132, 160, 607, 725
TspGWI	ACGGA	1 cut(s)	264
TspRI	CASTG	3 cut(s)	496, 589, 611
VpaK11BI	GGWCC	1 cut(s)	922
XapI	RAATTY	3 cut(s)	257, 703, 712
XceI	RCATGY	4 cut(s)	133, 289, 730, 829
XcmI	CCANNNNNNNNNTGG	1 cut(s)	603
XhoI	CTCGAG	1 cut(s)	15

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.