Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008947

Physical Location & Seq

Genomic Coordinates Reverse (-)

1142735 .. 1145008

Gene Structure 2274 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G04160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGTCGTCGTCTGCGAAGAAACAAACCCTGTTCATATCGACATTAATCATCTCATGGTACTCTTCAAACATCGGTGTTCTTCTCCTCAACAAGTTCCTTCTCTCGAATTACGGATTCAAATTCCCGATTTTTCTCACAATGTGTCACATGTCCGCTTGCGCTATCCTTAGCTACATCTCCATTGTTTTCCTCAAGCTTGTTCCTCTCCAACATCTCAAATCTCGTTCTCAATTCCTTAAGGTTGCTACTCTCAGCATCGTCTTTTGTGCTTCCGTCGTCGGTGGTAACATCTCCCTTCGTTACCTTCCTGTCTCTTTCAATCAAGCCGTCGGTGCTACGACGCCGTTTTTCACGGCTCTGTTTGCTTATCTTATGACCTTTAAGAGAGAAGCTTGGGTTACTTATGGTGCTCTCGTCCCTGTCGTCGCCGGTGTCGTCATCGCCAGTGGGGGTGAGCCAGGATTTCACTGGTTTGGGTTCATAATGTGCATTAGTGCTACTGCGGCAAGAGCCTTTAAATCTGTTCTTCAAGGCATCTTACTTTCTTCAGAGGGGGAAAAATTGAACTCAATGAATTTGATGTTGTATATGTCTCCCATAGCTGTCATTGCTCTTCTTCCCGTTACGCTATTTATGGAACCAGACGTGATCAGTGTGACCTTGACGCTTGCAAAACAACATCAGTACATGTGGATACTTCTTCTGGTTAACTCTGTCATGGCTTATTCAGCCAATCTGTTGAATTTTCTGGTTACCAAACACACAAGCGCCCTCACCCTCCAGGTTCTTGGAAATGCTAAAGGAGCAGTTGCAGTGGTGATTTCTATCTTGATCTTTCAAAACCCGGTTACGGTTATGGGAATTGGCGGGTACTCCATAACCGTCCTTGGGGTGGTTGCTTATGGAGAGACAAAACGCAGATTTAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0007275 GO:0008150 GO:0008152 GO:0009791 GO:0009987 GO:0010154 GO:0010191 GO:0010214 GO:0012505 GO:0015780 GO:0015931 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048359 GO:0048608 GO:0048731 GO:0048856 GO:0051179 GO:0051234 GO:0055085 GO:0061458 GO:0071702 GO:0071705 GO:1901264

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

309

Amino Acids

33.71

Weight (kDa)

9.79

Isoelectric Point (pI)

39.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UAA	PF08449	10 - 302	2.1e-11	UAA transporter family
TPT	PF03151	12 - 301	1.6e-43	Triose-phosphate Transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008947)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10290 AT5G04160
fragaria_vesca	FvH4_6g24460 FvH4_6g24460 FvH4_6g24460 FvH4_6g24460 FvH4_6g24460
malus_domestica	MD12G1081800.v1.1 MD14G1077100.v1.1
prunus_persica	Prupe.7G054100_v2.0.a1 Prupe.7G054100_v2.0.a1
pyrus_communis	pycom12g06780 pycom14g06570
rosa_chinensis	RchiOBHm_Chr3g0483441
rosa_laevigata	RLG00000023279
rosa_multiflora	Rmu_sc0007722.1_g000006 Rmu_sc0007793.1_g000019
rosa_roxburghii	Rroxscaffold_6G00398300
rosa_rugosa	Rorug03G0205900
rosa_samantha	Rh3BG291800 Rh3CG288800
rosa_wichuraiana	Rw3G023000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	153, 503, 867
AcsI	RAATTY	3 cut(s)	119, 574, 742
AcuI	CTGAAG	1 cut(s)	531
AcyI	GRCGYC	1 cut(s)	341
AdeI	CACNNNGTG	1 cut(s)	141
AfaI	GTAC	3 cut(s)	59, 686, 872
AfiI	CCNNNNNNNGG	3 cut(s)	850, 888, 892
AflII	CTTAAG	1 cut(s)	236
AflIII	ACRYGT	2 cut(s)	147, 687
AgsI	TTSAA	7 cut(s)	66, 118, 319, 530, 565, 742, 839
AjiI	CACGTC	1 cut(s)	646
AjnI	CCWGG	2 cut(s)	457, 780
AluBI	AGCT	4 cut(s)	171, 196, 392, 602
AluI	AGCT	4 cut(s)	171, 196, 392, 602
Alw21I	GWGCWC	1 cut(s)	412
Alw26I	GTCTC	3 cut(s)	316, 597, 902
ApoI	RAATTY	3 cut(s)	119, 574, 742
AseI	ATTAAT	1 cut(s)	44
AspLEI	GCGC	2 cut(s)	161, 770
AsuC2I	CCSGG	1 cut(s)	845
AsuHPI	GGTGA	3 cut(s)	464, 766, 829
Bbv12I	GWGCWC	1 cut(s)	412
BceAI	ACGGC	3 cut(s)	311, 328, 369
BciT130I	CCWGG	2 cut(s)	459, 782
BciVI	GTATCC	1 cut(s)	687
BclI	TGATCA	1 cut(s)	648
BcnI	CCSGG	1 cut(s)	845
BcoDI	GTCTC	3 cut(s)	316, 597, 902
BfoI	RGCGCY	1 cut(s)	771
BfrI	CTTAAG	1 cut(s)	236
BfuI	GTATCC	1 cut(s)	687
BisI	GCNGC	1 cut(s)	504
BlsI	GCNGC	1 cut(s)	505
Bme1390I	CCNGG	3 cut(s)	459, 782, 845
BmgBI	CACGTC	1 cut(s)	646
BmiI	GGNNCC	1 cut(s)	639
BmrFI	CCNGG	3 cut(s)	459, 782, 845
BmsI	GCATC	2 cut(s)	264, 543
BpmI	CTGGAG	1 cut(s)	764
Bpu10I	CCTNAGC	1 cut(s)	167
BpuEI	CTTGAG	1 cut(s)	176
BpuMI	CCSGG	1 cut(s)	845
BsaBI	GATNNNNATC	1 cut(s)	824
BsaHI	GRCGYC	1 cut(s)	341
BsaJI	CCNNGG	1 cut(s)	886
Bsc4I	CCNNNNNNNGG	3 cut(s)	850, 888, 892
Bse118I	RCCGGY	1 cut(s)	428
Bse1I	ACTGG	2 cut(s)	444, 473
Bse3DI	GCAATG	1 cut(s)	606
Bse8I	GATNNNNATC	1 cut(s)	824
BseBI	CCWGG	2 cut(s)	459, 782
BseDI	CCNNGG	1 cut(s)	886
BseJI	GATNNNNATC	1 cut(s)	824
BseLI	CCNNNNNNNGG	3 cut(s)	850, 888, 892
BseMI	GCAATG	1 cut(s)	606
BseMII	CTCAG	1 cut(s)	265
BseNI	ACTGG	2 cut(s)	444, 473
BseRI	GAGGAG	1 cut(s)	74
BsiHKAI	GWGCWC	1 cut(s)	412
BsiSI	CCGG	2 cut(s)	429, 845
BslFI	GGGAC	1 cut(s)	401
BslI	CCNNNNNNNGG	3 cut(s)	850, 888, 892
BsmAI	GTCTC	3 cut(s)	316, 597, 902
BsmFI	GGGAC	1 cut(s)	401
Bsp1286I	GDGCHC	1 cut(s)	412
Bsp143I	GATC	2 cut(s)	648, 831
BspACI	CCGC	3 cut(s)	153, 503, 867
BspCNI	CTCAG	1 cut(s)	264
BspLI	GGNNCC	1 cut(s)	639
BspQI	GCTCTTC	1 cut(s)	618
BspTI	CTTAAG	1 cut(s)	236
BsrDI	GCAATG	1 cut(s)	606
BsrFI	RCCGGY	1 cut(s)	428
BsrI	ACTGG	2 cut(s)	444, 473
BssAI	RCCGGY	1 cut(s)	428
BssECI	CCNNGG	1 cut(s)	886
BssMI	GATC	2 cut(s)	648, 831
BssNI	GRCGYC	1 cut(s)	341
BssT1I	CCWWGG	1 cut(s)	886
Bst2UI	CCWGG	2 cut(s)	459, 782
Bst4CI	ACNGT	2 cut(s)	853, 883
Bst6I	CTCTTC	2 cut(s)	67, 618
BstACI	GRCGYC	1 cut(s)	341
BstAFI	CTTAAG	1 cut(s)	236
BstC8I	GCNNGC	2 cut(s)	157, 669
BstDEI	CTNAG	2 cut(s)	167, 251
BstEII	GGTNACC	1 cut(s)	751
BstH2I	RGCGCY	1 cut(s)	771
BstHHI	GCGC	2 cut(s)	161, 770
BstKTI	GATC	2 cut(s)	651, 834
BstMAI	GTCTC	3 cut(s)	316, 597, 902
BstMBI	GATC	2 cut(s)	648, 831
BstMWI	GCNNNNNNNGC	7 cut(s)	332, 362, 503, 509, 608, 728, 803
BstNI	CCWGG	2 cut(s)	459, 782
BstNSI	RCATGY	2 cut(s)	151, 691
BstPI	GGTNACC	1 cut(s)	751
BstSCI	CCNGG	3 cut(s)	457, 780, 843
BstXI	CCANNNNNNTGG	1 cut(s)	788
BsuI	GTATCC	1 cut(s)	687
BtgZI	GCGATG	1 cut(s)	424
BtrI	CACGTC	1 cut(s)	646
BtsI	GCAGTG	1 cut(s)	819
BtsIMutI	CAGTG	4 cut(s)	451, 466, 658, 819
Cac8I	GCNNGC	2 cut(s)	157, 669
CfoI	GCGC	2 cut(s)	161, 770
Cfr10I	RCCGGY	1 cut(s)	428
CseI	GACGC	2 cut(s)	349, 673
Csp6I	GTAC	3 cut(s)	58, 685, 871
CviAII	CATG	4 cut(s)	54, 148, 688, 718
CviQI	GTAC	3 cut(s)	58, 685, 871
DdeI	CTNAG	2 cut(s)	167, 251
DpnI	GATC	2 cut(s)	650, 833
DpnII	GATC	2 cut(s)	648, 831
DraI	TTTAAA	1 cut(s)	517
DraIII	CACNNNGTG	1 cut(s)	141
Eam1104I	CTCTTC	2 cut(s)	67, 618
EarI	CTCTTC	2 cut(s)	67, 618
Eco130I	CCWWGG	1 cut(s)	886
Eco57I	CTGAAG	1 cut(s)	531
Eco91I	GGTNACC	1 cut(s)	751
EcoO65I	GGTNACC	1 cut(s)	751
EcoRII	CCWGG	2 cut(s)	457, 780
EcoT14I	CCWWGG	1 cut(s)	886
ErhI	CCWWGG	1 cut(s)	886
FaeI	CATG	4 cut(s)	57, 151, 691, 721
FaqI	GGGAC	1 cut(s)	401
FatI	CATG	4 cut(s)	53, 147, 687, 717
FauI	CCCGC	1 cut(s)	860
FbaI	TGATCA	1 cut(s)	648
Fnu4HI	GCNGC	1 cut(s)	504
Fsp4HI	GCNGC	1 cut(s)	504
GlaI	GCGC	2 cut(s)	160, 769
GluI	GCNGC	1 cut(s)	504
GsuI	CTGGAG	1 cut(s)	764
HaeII	RGCGCY	1 cut(s)	771
HapII	CCGG	2 cut(s)	429, 845
HgaI	GACGC	2 cut(s)	349, 673
HhaI	GCGC	2 cut(s)	161, 770
Hin1I	GRCGYC	1 cut(s)	341
Hin1II	CATG	4 cut(s)	57, 151, 691, 721
Hin6I	GCGC	2 cut(s)	159, 768
HinP1I	GCGC	2 cut(s)	159, 768
HincII	GTYRAC	1 cut(s)	709
HindII	GTYRAC	1 cut(s)	709
HindIII	AAGCTT	2 cut(s)	194, 390
HinfI	GANTC	1 cut(s)	114
HpaI	GTTAAC	1 cut(s)	709
HpaII	CCGG	2 cut(s)	429, 845
HphI	GGTGA	3 cut(s)	464, 766, 829
Hpy166II	GTNNAC	1 cut(s)	709
Hpy188I	TCNGA	1 cut(s)	550
Hpy188III	TCNNGA	3 cut(s)	103, 124, 829
Hpy8I	GTNNAC	1 cut(s)	709
Hpy99I	CGWCG	6 cut(s)	10, 278, 281, 332, 343, 428
HpyAV	CCTTC	3 cut(s)	107, 305, 314
HpyCH4III	ACNGT	2 cut(s)	853, 883
HpyCH4IV	ACGT	1 cut(s)	645
HpyCH4V	TGCA	3 cut(s)	489, 671, 812
HpyF10VI	GCNNNNNNNGC	7 cut(s)	332, 362, 503, 509, 608, 728, 803
HpyF3I	CTNAG	2 cut(s)	167, 251
HpySE526I	ACGT	1 cut(s)	645
Hsp92I	GRCGYC	1 cut(s)	341
Hsp92II	CATG	4 cut(s)	57, 151, 691, 721
HspAI	GCGC	2 cut(s)	159, 768
Ksp22I	TGATCA	1 cut(s)	648
KspAI	GTTAAC	1 cut(s)	709
Kzo9I	GATC	2 cut(s)	648, 831
LguI	GCTCTTC	1 cut(s)	618
LmnI	GCTCC	1 cut(s)	803
LweI	GCATC	2 cut(s)	264, 543
MaeII	ACGT	1 cut(s)	645
MaeIII	GTNAC	8 cut(s)	143, 284, 299, 397, 622, 655, 751, 847
MalI	GATC	2 cut(s)	650, 833
MboI	GATC	2 cut(s)	648, 831
MboII	GAAGA	8 cut(s)	28, 54, 71, 518, 537, 605, 608, 692
MhlI	GDGCHC	1 cut(s)	412
MluCI	AATT	7 cut(s)	106, 119, 230, 560, 574, 742, 861
MmeI	TCCRAC	1 cut(s)	232
MnlI	CCTC	6 cut(s)	95, 200, 213, 544, 782, 788
MseI	TTAA	5 cut(s)	44, 237, 381, 516, 708
MspCI	CTTAAG	1 cut(s)	236
MspI	CCGG	2 cut(s)	429, 845
MspR9I	CCNGG	3 cut(s)	459, 782, 845
MvaI	CCWGG	2 cut(s)	459, 782
MwoI	GCNNNNNNNGC	7 cut(s)	332, 362, 503, 509, 608, 728, 803
NciI	CCSGG	1 cut(s)	845
NdeII	GATC	2 cut(s)	648, 831
NlaIII	CATG	4 cut(s)	57, 151, 691, 721
NlaIV	GGNNCC	1 cut(s)	639
NmuCI	GTSAC	2 cut(s)	143, 655
NspI	RCATGY	2 cut(s)	151, 691
PciI	ACATGT	2 cut(s)	147, 687
PciSI	GCTCTTC	1 cut(s)	618
PcsI	WCGNNNNNNNCGW	3 cut(s)	11, 420, 432
PfeI	GAWTC	1 cut(s)	114
PkrI	GCNGC	1 cut(s)	505
PscI	ACATGT	2 cut(s)	147, 687
PshBI	ATTAAT	1 cut(s)	44
Psp6I	CCWGG	2 cut(s)	457, 780
PspEI	GGTNACC	1 cut(s)	751
PspGI	CCWGG	2 cut(s)	457, 780
PspN4I	GGNNCC	1 cut(s)	639
RsaI	GTAC	3 cut(s)	59, 686, 872
RsaNI	GTAC	3 cut(s)	58, 685, 871
SapI	GCTCTTC	1 cut(s)	618
SaqAI	TTAA	5 cut(s)	44, 237, 381, 516, 708
SatI	GCNGC	1 cut(s)	504
Sau3AI	GATC	2 cut(s)	648, 831
ScrFI	CCNGG	3 cut(s)	459, 782, 845
SduI	GDGCHC	1 cut(s)	412
SfaNI	GCATC	2 cut(s)	264, 543
SgrAI	CRCCGGYG	1 cut(s)	428
SmlI	CTYRAG	2 cut(s)	191, 236
SmoI	CTYRAG	2 cut(s)	191, 236
Sse9I	AATT	7 cut(s)	106, 119, 230, 560, 574, 742, 861
SsiI	CCGC	3 cut(s)	153, 503, 867
StyD4I	CCNGG	3 cut(s)	457, 780, 843
StyI	CCWWGG	1 cut(s)	886
TaaI	ACNGT	2 cut(s)	853, 883
TaiI	ACGT	1 cut(s)	648
TaqI	TCGA	2 cut(s)	38, 104
TasI	AATT	7 cut(s)	106, 119, 230, 560, 574, 742, 861
TatI	WGTACW	1 cut(s)	684
TauI	GCSGC	1 cut(s)	506
TfiI	GAWTC	1 cut(s)	114
Tru1I	TTAA	5 cut(s)	44, 237, 381, 516, 708
Tru9I	TTAA	5 cut(s)	44, 237, 381, 516, 708
TscAI	CASTG	4 cut(s)	451, 473, 658, 819
TseFI	GTSAC	2 cut(s)	143, 655
Tsp45I	GTSAC	2 cut(s)	143, 655
TspDTI	ATGAA	3 cut(s)	22, 469, 587
TspGWI	ACGGA	2 cut(s)	126, 262
TspRI	CASTG	4 cut(s)	451, 473, 658, 819
Vha464I	CTTAAG	1 cut(s)	236
VspI	ATTAAT	1 cut(s)	44
XapI	RAATTY	3 cut(s)	119, 574, 742
XceI	RCATGY	2 cut(s)	151, 691
XcmI	CCANNNNNNNNNTGG	1 cut(s)	465

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.