Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0008947

Physical Location & Seq

Genomic Coordinates Reverse (-)

9980550 .. 9984382

Gene Structure 3833 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1081800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGTCGTCAAAGAAGCAAGCCATTTTCATATCTTCCCTCATAATCCTCTGGTACTCATCAAACATCGGCGTCCTCCTACTCAACAAGTTTTTACTCTCCAACTATGGCTTCCGATTCCCAATCTTCCTCACAATGTGCCACATGGCCGCCTGCGCAGTTCTCAGCTACCTCTCCATCGTCTTCCTCAAGATTGTGCCTCTCCAGACCATCAAATCTCGGTCCCAGTTCCTCAAGATTGCCACTTTGAGCGTTGTCTTTTGTGGGTCGGTCGTGGGTGGGAATATCTCTCTCAGGTACCTTGCTGTTTCTTTCAATCAGGCTGTCGGTGCAACGACGCCGTTTTTCACCGCCCTGTTTGCGTATTTGGCGACCTTGAAGAGGGAGGCCTGGGTTACCTATGCTGCTCTTGTGCCTGTTGTTGCTGGGGTGGTGATTGCCAGTGGGGGCGAGCCAAGTTTTCACTTCTTTGGGTTTGTTATGTGCATTAGTGCAACTGCTGCAAGGGCCTTTAAGTCTGTTCTTCAGGGTATCCTACTTTCTTCTGAAGGGGAGAAGTTGAACTCAATGAATTTGCTGCTGTACATGTCTCCGATTGCTGTTCTTGTGTTGTTGCCTGCTGCACTTATAATGGAGCCCAATGTCGTAGATGCCACTCTGTCACTTGGAAGGGAGCATAAATTCATGTGGTTACTTCTTTTGATTAATTCAGTGATGGCATATTCTGCTAATTTGTCAAATTTTTTGGTGACCAAACATACAAGTGCATTAACGCTTCAGGTATTAGGCAATGCAAAAGGCACAGTGGCTGTTGTTATCTCAATTCTTTTATTCAAGAACCCCGTGACTGCTATCGGCATTGGCGGTTACATGATAACTGTTATGGGAGTCGTTGCCTATGGAGAAGCAAAACGGAGGCTCAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0007275 GO:0008150 GO:0008152 GO:0009791 GO:0009987 GO:0010154 GO:0010191 GO:0010214 GO:0012505 GO:0015780 GO:0015931 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048359 GO:0048608 GO:0048731 GO:0048856 GO:0051179 GO:0051234 GO:0055085 GO:0061458 GO:0071702 GO:0071705 GO:1901264

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

308

Amino Acids

33.21

Weight (kDa)

9.88

Isoelectric Point (pI)

40.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UAA	PF08449	7 - 300	5.2e-11	UAA transporter family
TPT	PF03151	11 - 299	3.2e-43	Triose-phosphate Transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008947)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10290 AT5G04160
fragaria_vesca	FvH4_6g24460 FvH4_6g24460 FvH4_6g24460 FvH4_6g24460 FvH4_6g24460
malus_domestica	MD12G1081800.v1.1 MD14G1077100.v1.1
prunus_persica	Prupe.7G054100_v2.0.a1 Prupe.7G054100_v2.0.a1
pyrus_communis	pycom12g06780 pycom14g06570
rosa_chinensis	RchiOBHm_Chr3g0483441
rosa_laevigata	RLG00000023279
rosa_multiflora	Rmu_sc0007722.1_g000006 Rmu_sc0007793.1_g000019
rosa_roxburghii	Rroxscaffold_6G00398300
rosa_rugosa	Rorug03G0205900
rosa_samantha	Rh3BG291800 Rh3CG288800
rosa_wichuraiana	Rw3G023000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	626
Acc16I	TGCGCA	1 cut(s)	154
Acc65I	GGTACC	1 cut(s)	294
AccB1I	GGYRCC	1 cut(s)	294
AciI	CCGC	3 cut(s)	147, 348, 861
AcoI	YGGCCR	1 cut(s)	144
AcsI	RAATTY	3 cut(s)	568, 677, 736
AcuI	CTGAAG	3 cut(s)	506, 564, 758
AcyI	GRCGYC	2 cut(s)	69, 335
AdeI	CACNNNGTG	1 cut(s)	135
AfaI	GTAC	3 cut(s)	53, 296, 581
AfiI	CCNNNNNNNGG	1 cut(s)	378
AflIII	ACRYGT	1 cut(s)	582
AgsI	TTSAA	4 cut(s)	313, 376, 559, 832
AjnI	CCWGG	1 cut(s)	386
AjuI	GAANNNNNNNTTGG	2 cut(s)	92, 124
AluBI	AGCT	1 cut(s)	165
AluI	AGCT	1 cut(s)	165
Alw26I	GTCTC	1 cut(s)	591
AlwNI	CAGNNNCTG	1 cut(s)	806
AoxI	GGCC	3 cut(s)	144, 384, 504
ApeKI	GCWGC	4 cut(s)	401, 497, 574, 617
ApoI	RAATTY	3 cut(s)	568, 677, 736
AseI	ATTAAT	1 cut(s)	702
Asp718I	GGTACC	1 cut(s)	294
AspLEI	GCGC	1 cut(s)	155
AspS9I	GGNCC	2 cut(s)	219, 504
AsuHPI	GGTGA	3 cut(s)	337, 442, 757
AvaII	GGWCC	1 cut(s)	219
BanI	GGYRCC	1 cut(s)	294
BanII	GRGCYC	1 cut(s)	636
BbsI	GAAGAC	1 cut(s)	172
BbvI	GCAGC	4 cut(s)	388, 484, 561, 604
BccI	CCATC	3 cut(s)	182, 215, 706
BceAI	ACGGC	1 cut(s)	322
BciT130I	CCWGG	1 cut(s)	388
BciVI	GTATCC	1 cut(s)	539
BcoDI	GTCTC	1 cut(s)	591
BfuI	GTATCC	1 cut(s)	539
BisI	GCNGC	5 cut(s)	147, 402, 498, 575, 618
BlsI	GCNGC	5 cut(s)	148, 403, 499, 576, 619
Bme1390I	CCNGG	1 cut(s)	388
Bme18I	GGWCC	1 cut(s)	219
BmgT120I	GGNCC	2 cut(s)	219, 504
BmiI	GGNNCC	3 cut(s)	221, 296, 633
BmrFI	CCNGG	1 cut(s)	388
BmrI	ACTGGG	1 cut(s)	217
BmsI	GCATC	1 cut(s)	637
BmuI	ACTGGG	1 cut(s)	217
BpiI	GAAGAC	1 cut(s)	172
BpmI	CTGGAG	1 cut(s)	185
BpuEI	CTTGAG	2 cut(s)	170, 215
BsaHI	GRCGYC	2 cut(s)	69, 335
BsaJI	CCNNGG	1 cut(s)	387
Bsc4I	CCNNNNNNNGG	1 cut(s)	378
Bse1I	ACTGG	2 cut(s)	223, 438
Bse3DI	GCAATG	1 cut(s)	793
BseBI	CCWGG	1 cut(s)	388
BseDI	CCNNGG	1 cut(s)	387
BseLI	CCNNNNNNNGG	1 cut(s)	378
BseMI	GCAATG	1 cut(s)	793
BseMII	CTCAG	2 cut(s)	175, 304
BseNI	ACTGG	2 cut(s)	223, 438
BseXI	GCAGC	4 cut(s)	388, 484, 561, 604
BseYI	CCCAGC	1 cut(s)	422
BsgI	GTGCAG	1 cut(s)	603
Bsh1285I	CGRYCG	1 cut(s)	270
BshFI	GGCC	3 cut(s)	146, 386, 506
BshNI	GGYRCC	1 cut(s)	294
BsiEI	CGRYCG	1 cut(s)	270
BslFI	GGGAC	1 cut(s)	205
BslI	CCNNNNNNNGG	1 cut(s)	378
BsmAI	GTCTC	1 cut(s)	591
BsmFI	GGGAC	1 cut(s)	205
BsnI	GGCC	3 cut(s)	146, 386, 506
Bsp1286I	GDGCHC	1 cut(s)	636
Bsp1407I	TGTACA	1 cut(s)	579
BspACI	CCGC	3 cut(s)	147, 348, 861
BspANI	GGCC	3 cut(s)	146, 386, 506
BspCNI	CTCAG	2 cut(s)	174, 303
BspLI	GGNNCC	3 cut(s)	221, 296, 633
BspT107I	GGYRCC	1 cut(s)	294
BsrDI	GCAATG	1 cut(s)	793
BsrGI	TGTACA	1 cut(s)	579
BsrI	ACTGG	2 cut(s)	223, 438
BssECI	CCNNGG	1 cut(s)	387
BssNI	GRCGYC	2 cut(s)	69, 335
Bst2UI	CCWGG	1 cut(s)	388
Bst4CI	ACNGT	2 cut(s)	802, 877
Bst6I	CTCTTC	1 cut(s)	371
BstACI	GRCGYC	2 cut(s)	69, 335
BstAPI	GCANNNNNTGC	2 cut(s)	497, 722
BstAUI	TGTACA	1 cut(s)	579
BstC8I	GCNNGC	4 cut(s)	18, 151, 449, 615
BstDEI	CTNAG	3 cut(s)	161, 290, 917
BstEII	GGTNACC	2 cut(s)	391, 745
BstENI	CCTNNNNNAGG	1 cut(s)	376
BstHHI	GCGC	1 cut(s)	155
BstMAI	GTCTC	1 cut(s)	591
BstMCI	CGRYCG	1 cut(s)	270
BstMWI	GCNNNNNNNGC	7 cut(s)	152, 326, 356, 365, 497, 503, 722
BstNI	CCWGG	1 cut(s)	388
BstNSI	RCATGY	1 cut(s)	586
BstPI	GGTNACC	2 cut(s)	391, 745
BstSCI	CCNGG	1 cut(s)	386
BstV1I	GCAGC	4 cut(s)	388, 484, 561, 604
BstV2I	GAAGAC	1 cut(s)	172
BsuI	GTATCC	1 cut(s)	539
BsuRI	GGCC	3 cut(s)	146, 386, 506
BtsIMutI	CAGTG	3 cut(s)	445, 714, 807
Cac8I	GCNNGC	4 cut(s)	18, 151, 449, 615
CaiI	CAGNNNCTG	1 cut(s)	806
CfoI	GCGC	1 cut(s)	155
Cfr13I	GGNCC	2 cut(s)	219, 504
CseI	GACGC	2 cut(s)	58, 343
Csp6I	GTAC	3 cut(s)	52, 295, 580
CviAII	CATG	4 cut(s)	142, 583, 682, 868
CviQI	GTAC	3 cut(s)	52, 295, 580
DdeI	CTNAG	3 cut(s)	161, 290, 917
DraIII	CACNNNGTG	1 cut(s)	135
EaeI	YGGCCR	1 cut(s)	144
Eam1104I	CTCTTC	1 cut(s)	371
EarI	CTCTTC	1 cut(s)	371
Eco147I	AGGCCT	1 cut(s)	386
Eco24I	GRGCYC	1 cut(s)	636
Eco47I	GGWCC	1 cut(s)	219
Eco57I	CTGAAG	3 cut(s)	506, 564, 758
Eco91I	GGTNACC	2 cut(s)	391, 745
EcoNI	CCTNNNNNAGG	1 cut(s)	376
EcoO109I	RGGNCCY	1 cut(s)	504
EcoO65I	GGTNACC	2 cut(s)	391, 745
EcoRII	CCWGG	1 cut(s)	386
EcoT38I	GRGCYC	1 cut(s)	636
FaeI	CATG	4 cut(s)	145, 586, 685, 871
FaqI	GGGAC	1 cut(s)	205
FatI	CATG	4 cut(s)	141, 582, 681, 867
Fnu4HI	GCNGC	5 cut(s)	147, 402, 498, 575, 618
FriOI	GRGCYC	1 cut(s)	636
Fsp4HI	GCNGC	5 cut(s)	147, 402, 498, 575, 618
FspI	TGCGCA	1 cut(s)	154
GlaI	GCGC	1 cut(s)	154
GluI	GCNGC	5 cut(s)	147, 402, 498, 575, 618
GsaI	CCCAGC	1 cut(s)	426
GsuI	CTGGAG	1 cut(s)	185
HaeIII	GGCC	3 cut(s)	146, 386, 506
HgaI	GACGC	2 cut(s)	58, 343
HhaI	GCGC	1 cut(s)	155
Hin1I	GRCGYC	2 cut(s)	69, 335
Hin1II	CATG	4 cut(s)	145, 586, 685, 871
Hin6I	GCGC	1 cut(s)	153
HinP1I	GCGC	1 cut(s)	153
HinfI	GANTC	2 cut(s)	114, 885
HphI	GGTGA	3 cut(s)	337, 442, 757
Hpy188I	TCNGA	4 cut(s)	113, 544, 591, 920
Hpy188III	TCNNGA	4 cut(s)	187, 202, 232, 832
Hpy99I	CGWCG	1 cut(s)	337
HpyAV	CCTTC	2 cut(s)	539, 660
HpyCH4III	ACNGT	2 cut(s)	802, 877
HpyCH4V	TGCA	7 cut(s)	329, 483, 491, 500, 620, 764, 791
HpyF10VI	GCNNNNNNNGC	7 cut(s)	152, 326, 356, 365, 497, 503, 722
HpyF3I	CTNAG	3 cut(s)	161, 290, 917
Hsp92I	GRCGYC	2 cut(s)	69, 335
Hsp92II	CATG	4 cut(s)	145, 586, 685, 871
HspAI	GCGC	1 cut(s)	153
KpnI	GGTACC	1 cut(s)	298
LmnI	GCTCC	2 cut(s)	631, 670
Lsp1109I	GCAGC	4 cut(s)	388, 484, 561, 604
LweI	GCATC	1 cut(s)	637
MaeIII	GTNAC	6 cut(s)	391, 657, 687, 745, 841, 863
MboII	GAAGA	6 cut(s)	24, 115, 172, 388, 512, 531
MhlI	GDGCHC	1 cut(s)	636
MluCI	AATT	6 cut(s)	568, 677, 703, 727, 736, 819
MlyI	GAGTC	1 cut(s)	894
MmeI	TCCRAC	1 cut(s)	123
MseI	TTAA	3 cut(s)	510, 702, 767
MslI	CAYNNNNRTG	1 cut(s)	759
MspR9I	CCNGG	1 cut(s)	388
MvaI	CCWGG	1 cut(s)	388
MwoI	GCNNNNNNNGC	7 cut(s)	152, 326, 356, 365, 497, 503, 722
NlaIII	CATG	4 cut(s)	145, 586, 685, 871
NlaIV	GGNNCC	3 cut(s)	221, 296, 633
NmuCI	GTSAC	3 cut(s)	657, 745, 841
NsbI	TGCGCA	1 cut(s)	154
NspI	RCATGY	1 cut(s)	586
PceI	AGGCCT	1 cut(s)	386
PciI	ACATGT	1 cut(s)	582
PfeI	GAWTC	1 cut(s)	114
PkrI	GCNGC	5 cut(s)	148, 403, 499, 576, 619
PleI	GAGTC	1 cut(s)	893
PpsI	GAGTC	1 cut(s)	893
PscI	ACATGT	1 cut(s)	582
PshBI	ATTAAT	1 cut(s)	702
PsiI	TTATAA	1 cut(s)	626
Psp6I	CCWGG	1 cut(s)	386
PspEI	GGTNACC	2 cut(s)	391, 745
PspFI	CCCAGC	1 cut(s)	422
PspGI	CCWGG	1 cut(s)	386
PspN4I	GGNNCC	3 cut(s)	221, 296, 633
PspPI	GGNCC	2 cut(s)	219, 504
PstNI	CAGNNNCTG	1 cut(s)	806
RsaI	GTAC	3 cut(s)	53, 296, 581
RsaNI	GTAC	3 cut(s)	52, 295, 580
RseI	CAYNNNNRTG	1 cut(s)	759
SaqAI	TTAA	3 cut(s)	510, 702, 767
SatI	GCNGC	5 cut(s)	147, 402, 498, 575, 618
Sau96I	GGNCC	2 cut(s)	219, 504
SchI	GAGTC	1 cut(s)	894
ScrFI	CCNGG	1 cut(s)	388
SduI	GDGCHC	1 cut(s)	636
SetI	ASST	7 cut(s)	167, 171, 296, 300, 374, 398, 780
SfaNI	GCATC	1 cut(s)	637
SinI	GGWCC	1 cut(s)	219
SmiMI	CAYNNNNRTG	1 cut(s)	759
SmlI	CTYRAG	2 cut(s)	185, 230
SmoI	CTYRAG	2 cut(s)	185, 230
Sse9I	AATT	6 cut(s)	568, 677, 703, 727, 736, 819
SseBI	AGGCCT	1 cut(s)	386
SsiI	CCGC	3 cut(s)	147, 348, 861
StuI	AGGCCT	1 cut(s)	386
StyD4I	CCNGG	1 cut(s)	386
TaaI	ACNGT	2 cut(s)	802, 877
TaqII	GACCGA	2 cut(s)	207, 256
TasI	AATT	6 cut(s)	568, 677, 703, 727, 736, 819
TatI	WGTACW	1 cut(s)	579
TauI	GCSGC	1 cut(s)	149
TfiI	GAWTC	1 cut(s)	114
Tru1I	TTAA	3 cut(s)	510, 702, 767
Tru9I	TTAA	3 cut(s)	510, 702, 767
TscAI	CASTG	3 cut(s)	445, 714, 807
TseFI	GTSAC	3 cut(s)	657, 745, 841
TseI	GCWGC	4 cut(s)	401, 497, 574, 617
Tsp45I	GTSAC	3 cut(s)	657, 745, 841
TspDTI	ATGAA	3 cut(s)	16, 581, 670
TspRI	CASTG	3 cut(s)	445, 714, 807
VpaK11BI	GGWCC	1 cut(s)	219
VspI	ATTAAT	1 cut(s)	702
XagI	CCTNNNNNAGG	1 cut(s)	376
XapI	RAATTY	3 cut(s)	568, 677, 736
XceI	RCATGY	1 cut(s)	586

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.