Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0008947

Physical Location & Seq

Genomic Coordinates Reverse (-)

29241016 .. 29245080

Gene Structure 4065 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG291800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGTCCTCAAAGAAACAAGCCATTTTCATCTCCTCCCTCGTAATCCTCTGGTACTCATCAAACATCGGTGTCCTCCTACTCAACAAGTTCCTACTCTCCAACTATGGCTTCAGATTCCCAATCTTCCTCACAATGTGCCACATGTCCGCCTGCGCCATTCTCAGCTACGTTTCCATCGTCTTCCTCAAGATTGTGCCTTTGCAGACCCTCAAATCTCGGTCCCAGTTCGTCAAGATCGCCACTTTGGGCATTGTCTTTTGTGGGTCTGTTGTGGGTGGCAACATTTCTCTCAGATATCTCGCTGTCTCCTTCAATCAGGCTGTCGGTGCTACGACGCCGTTTTTCACCGCCCTTTTTGCGTATCTGGCGACCCTTAAGAGGGAGGCTTGGGTTACCTACGCTGCTCTTGTGCCCGTTGTTACTGGAGTTGTGATTGCTAGTGGGGGTGAGCCGAGTTTTCACTTCTTTGGATTTGTTATGTGCATTAGTGCAACTGCTGCAAGGGCATTTAAATCTGTTCTTCAGAGTATCCTACTTTCTTCTGACGGGGAAAAGTTGAACTCTATGAATTTGCTGCTTTATATGTCACCAATTGCTATTCTAGTATTATTGCCTGCTGCACTTATTATGGAGCCCAATGTTGTAGAGGTCACTCTGTCACTCGGAAGGGAGCATAAATTCATGTGGTTACTTCTTTTGGTTAATTCAGTAATGGCCTATTCGGCTAATTTGACAAATTTCTTGGTGACGAAGCATACAAGTGCATTAACACTTCAGGTTCTGACATCTTTTTCCTATATTTCTTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0007275 GO:0008150 GO:0008152 GO:0009791 GO:0009987 GO:0010154 GO:0010191 GO:0010214 GO:0012505 GO:0015780 GO:0015931 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048359 GO:0048608 GO:0048731 GO:0048856 GO:0051179 GO:0051234 GO:0055085 GO:0061458 GO:0071702 GO:0071705 GO:1901264

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

269

Amino Acids

29.4

Weight (kDa)

9.61

Isoelectric Point (pI)

42.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPT	PF03151	11 - 260	9.2e-34	Triose-phosphate Transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008947)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10290 AT5G04160
fragaria_vesca	FvH4_6g24460 FvH4_6g24460 FvH4_6g24460 FvH4_6g24460 FvH4_6g24460
malus_domestica	MD12G1081800.v1.1 MD14G1077100.v1.1
prunus_persica	Prupe.7G054100_v2.0.a1 Prupe.7G054100_v2.0.a1
pyrus_communis	pycom12g06780 pycom14g06570
rosa_chinensis	RchiOBHm_Chr3g0483441
rosa_laevigata	RLG00000023279
rosa_multiflora	Rmu_sc0007722.1_g000006 Rmu_sc0007793.1_g000019
rosa_roxburghii	Rroxscaffold_6G00398300
rosa_rugosa	Rorug03G0205900
rosa_samantha	Rh3BG291800 Rh3CG288800
rosa_wichuraiana	Rw3G023000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	808
AciI	CCGC	2 cut(s)	147, 348
AcsI	RAATTY	3 cut(s)	568, 677, 736
AcuI	CTGAAG	3 cut(s)	94, 506, 758
AcyI	GRCGYC	1 cut(s)	335
AdeI	CACNNNGTG	1 cut(s)	135
AfaI	GTAC	1 cut(s)	53
AfiI	CCNNNNNNNGG	2 cut(s)	378, 379
AflII	CTTAAG	1 cut(s)	374
AflIII	ACRYGT	1 cut(s)	141
AgsI	TTSAA	2 cut(s)	313, 559
AjuI	GAANNNNNNNTTGG	2 cut(s)	92, 124
AluBI	AGCT	1 cut(s)	165
AluI	AGCT	1 cut(s)	165
Alw26I	GTCTC	1 cut(s)	310
AlwNI	CAGNNNCTG	1 cut(s)	781
AoxI	GGCC	1 cut(s)	714
ApeKI	GCWGC	4 cut(s)	401, 497, 574, 617
ApoI	RAATTY	3 cut(s)	568, 677, 736
AspLEI	GCGC	1 cut(s)	155
AspS9I	GGNCC	1 cut(s)	219
AsuHPI	GGTGA	4 cut(s)	337, 458, 579, 757
AvaII	GGWCC	1 cut(s)	219
BaeGI	GKGCMC	1 cut(s)	414
BanII	GRGCYC	1 cut(s)	636
BbsI	GAAGAC	1 cut(s)	172
BbvI	GCAGC	4 cut(s)	388, 484, 561, 604
BccI	CCATC	1 cut(s)	182
BceAI	ACGGC	1 cut(s)	322
BciVI	GTATCC	1 cut(s)	539
BcoDI	GTCTC	1 cut(s)	310
BfaI	CTAG	2 cut(s)	438, 602
BfrI	CTTAAG	1 cut(s)	374
BfuI	GTATCC	1 cut(s)	539
BglI	GCCNNNNNGGC	1 cut(s)	722
BisI	GCNGC	4 cut(s)	402, 498, 575, 618
BlsI	GCNGC	4 cut(s)	403, 499, 576, 619
Bme18I	GGWCC	1 cut(s)	219
BmgT120I	GGNCC	1 cut(s)	219
BmiI	GGNNCC	2 cut(s)	221, 633
BmrI	ACTGGG	1 cut(s)	217
BmuI	ACTGGG	1 cut(s)	217
BpiI	GAAGAC	1 cut(s)	172
BpmI	CTGGAG	1 cut(s)	444
BpuEI	CTTGAG	1 cut(s)	170
BsaHI	GRCGYC	1 cut(s)	335
Bsc4I	CCNNNNNNNGG	2 cut(s)	378, 379
Bse1I	ACTGG	2 cut(s)	223, 427
BseLI	CCNNNNNNNGG	2 cut(s)	378, 379
BseMII	CTCAG	2 cut(s)	175, 304
BseNI	ACTGG	2 cut(s)	223, 427
BseRI	GAGGAG	1 cut(s)	22
BseSI	GKGCMC	1 cut(s)	414
BseXI	GCAGC	4 cut(s)	388, 484, 561, 604
BsgI	GTGCAG	1 cut(s)	603
BshFI	GGCC	1 cut(s)	716
BslFI	GGGAC	1 cut(s)	205
BslI	CCNNNNNNNGG	2 cut(s)	378, 379
BsmAI	GTCTC	1 cut(s)	310
BsmFI	GGGAC	1 cut(s)	205
BsnI	GGCC	1 cut(s)	716
Bsp1286I	GDGCHC	2 cut(s)	414, 636
Bsp143I	GATC	1 cut(s)	234
BspACI	CCGC	2 cut(s)	147, 348
BspANI	GGCC	1 cut(s)	716
BspCNI	CTCAG	2 cut(s)	174, 303
BspLI	GGNNCC	2 cut(s)	221, 633
BspTI	CTTAAG	1 cut(s)	374
BsrI	ACTGG	2 cut(s)	223, 427
BssMI	GATC	1 cut(s)	234
BssNI	GRCGYC	1 cut(s)	335
BstACI	GRCGYC	1 cut(s)	335
BstAFI	CTTAAG	1 cut(s)	374
BstAPI	GCANNNNNTGC	1 cut(s)	497
BstC8I	GCNNGC	2 cut(s)	151, 615
BstDEI	CTNAG	2 cut(s)	161, 290
BstEII	GGTNACC	1 cut(s)	391
BstHHI	GCGC	1 cut(s)	155
BstKTI	GATC	1 cut(s)	237
BstMAI	GTCTC	1 cut(s)	310
BstMBI	GATC	1 cut(s)	234
BstMWI	GCNNNNNNNGC	6 cut(s)	326, 356, 365, 497, 503, 722
BstNSI	RCATGY	1 cut(s)	145
BstPI	GGTNACC	1 cut(s)	391
BstSLI	GKGCMC	1 cut(s)	414
BstV1I	GCAGC	4 cut(s)	388, 484, 561, 604
BstV2I	GAAGAC	1 cut(s)	172
BsuI	GTATCC	1 cut(s)	539
BsuRI	GGCC	1 cut(s)	716
Cac8I	GCNNGC	2 cut(s)	151, 615
CaiI	CAGNNNCTG	1 cut(s)	781
CfoI	GCGC	1 cut(s)	155
Cfr13I	GGNCC	1 cut(s)	219
CseI	GACGC	1 cut(s)	343
Csp6I	GTAC	1 cut(s)	52
CviAII	CATG	2 cut(s)	142, 682
CviJI	RGCY	9 cut(s)	20, 108, 165, 320, 386, 451, 634, 716, 725
CviKI_1	RGCY	9 cut(s)	20, 108, 165, 320, 386, 451, 634, 716, 725
CviQI	GTAC	1 cut(s)	52
DdeI	CTNAG	2 cut(s)	161, 290
DpnI	GATC	1 cut(s)	236
DpnII	GATC	1 cut(s)	234
DraI	TTTAAA	1 cut(s)	511
DraIII	CACNNNGTG	1 cut(s)	135
EciI	GGCGGA	1 cut(s)	136
Eco24I	GRGCYC	1 cut(s)	636
Eco32I	GATATC	1 cut(s)	296
Eco47I	GGWCC	1 cut(s)	219
Eco57I	CTGAAG	3 cut(s)	94, 506, 758
Eco91I	GGTNACC	1 cut(s)	391
EcoO65I	GGTNACC	1 cut(s)	391
EcoRV	GATATC	1 cut(s)	296
EcoT38I	GRGCYC	1 cut(s)	636
FaeI	CATG	2 cut(s)	145, 685
FaqI	GGGAC	1 cut(s)	205
FatI	CATG	2 cut(s)	141, 681
Fnu4HI	GCNGC	4 cut(s)	402, 498, 575, 618
FriOI	GRGCYC	1 cut(s)	636
Fsp4HI	GCNGC	4 cut(s)	402, 498, 575, 618
FspBI	CTAG	2 cut(s)	438, 602
GlaI	GCGC	1 cut(s)	154
GluI	GCNGC	4 cut(s)	402, 498, 575, 618
GsuI	CTGGAG	1 cut(s)	444
HaeIII	GGCC	1 cut(s)	716
HgaI	GACGC	1 cut(s)	343
HhaI	GCGC	1 cut(s)	155
Hin1I	GRCGYC	1 cut(s)	335
Hin1II	CATG	2 cut(s)	145, 685
Hin6I	GCGC	1 cut(s)	153
HinP1I	GCGC	1 cut(s)	153
HinfI	GANTC	1 cut(s)	114
HphI	GGTGA	4 cut(s)	337, 458, 579, 757
Hpy188I	TCNGA	6 cut(s)	113, 293, 525, 544, 665, 783
Hpy188III	TCNNGA	2 cut(s)	187, 232
Hpy99I	CGWCG	1 cut(s)	337
HpyAV	CCTTC	2 cut(s)	319, 660
HpyCH4IV	ACGT	1 cut(s)	168
HpyCH4V	TGCA	6 cut(s)	202, 483, 491, 500, 620, 764
HpyF10VI	GCNNNNNNNGC	6 cut(s)	326, 356, 365, 497, 503, 722
HpyF3I	CTNAG	2 cut(s)	161, 290
HpySE526I	ACGT	1 cut(s)	168
Hsp92I	GRCGYC	1 cut(s)	335
Hsp92II	CATG	2 cut(s)	145, 685
HspAI	GCGC	1 cut(s)	153
Kzo9I	GATC	1 cut(s)	234
LmnI	GCTCC	2 cut(s)	631, 670
LpnPI	CCDG	8 cut(s)	34, 163, 236, 302, 350, 408, 627, 761
Lsp1109I	GCAGC	4 cut(s)	388, 484, 561, 604
MaeI	CTAG	2 cut(s)	438, 602
MaeII	ACGT	1 cut(s)	168
MaeIII	GTNAC	7 cut(s)	391, 418, 585, 649, 657, 687, 745
MalI	GATC	1 cut(s)	236
MboI	GATC	1 cut(s)	234
MboII	GAAGA	4 cut(s)	115, 172, 512, 531
MfeI	CAATTG	1 cut(s)	591
MhlI	GDGCHC	2 cut(s)	414, 636
MluCI	AATT	6 cut(s)	568, 591, 677, 703, 727, 736
MmeI	TCCRAC	1 cut(s)	123
MseI	TTAA	4 cut(s)	375, 510, 702, 767
MslI	CAYNNNNRTG	1 cut(s)	759
MspCI	CTTAAG	1 cut(s)	374
MunI	CAATTG	1 cut(s)	591
MwoI	GCNNNNNNNGC	6 cut(s)	326, 356, 365, 497, 503, 722
NdeII	GATC	1 cut(s)	234
NlaIII	CATG	2 cut(s)	145, 685
NlaIV	GGNNCC	2 cut(s)	221, 633
NmeAIII	GCCGAG	1 cut(s)	477
NmuCI	GTSAC	4 cut(s)	585, 649, 657, 745
NspI	RCATGY	1 cut(s)	145
PciI	ACATGT	1 cut(s)	141
PcsI	WCGNNNNNNNCGW	1 cut(s)	174
PfeI	GAWTC	1 cut(s)	114
PkrI	GCNGC	4 cut(s)	403, 499, 576, 619
PscI	ACATGT	1 cut(s)	141
PsiI	TTATAA	1 cut(s)	808
PspEI	GGTNACC	1 cut(s)	391
PspN4I	GGNNCC	2 cut(s)	221, 633
PspPI	GGNCC	1 cut(s)	219
PstNI	CAGNNNCTG	1 cut(s)	781
RsaI	GTAC	1 cut(s)	53
RsaNI	GTAC	1 cut(s)	52
RseI	CAYNNNNRTG	1 cut(s)	759
SaqAI	TTAA	4 cut(s)	375, 510, 702, 767
SatI	GCNGC	4 cut(s)	402, 498, 575, 618
Sau3AI	GATC	1 cut(s)	234
Sau96I	GGNCC	1 cut(s)	219
SduI	GDGCHC	2 cut(s)	414, 636
SetI	ASST	5 cut(s)	167, 171, 398, 651, 780
SinI	GGWCC	1 cut(s)	219
SmiI	ATTTAAAT	1 cut(s)	511
SmiMI	CAYNNNNRTG	1 cut(s)	759
SmlI	CTYRAG	2 cut(s)	185, 374
SmoI	CTYRAG	2 cut(s)	185, 374
Sse9I	AATT	6 cut(s)	568, 591, 677, 703, 727, 736
SsiI	CCGC	2 cut(s)	147, 348
SspMI	CTAG	2 cut(s)	438, 602
SwaI	ATTTAAAT	1 cut(s)	511
TaiI	ACGT	1 cut(s)	171
TaqII	GACCGA	1 cut(s)	207
TasI	AATT	6 cut(s)	568, 591, 677, 703, 727, 736
TfiI	GAWTC	1 cut(s)	114
Tru1I	TTAA	4 cut(s)	375, 510, 702, 767
Tru9I	TTAA	4 cut(s)	375, 510, 702, 767
TseFI	GTSAC	4 cut(s)	585, 649, 657, 745
TseI	GCWGC	4 cut(s)	401, 497, 574, 617
Tsp45I	GTSAC	4 cut(s)	585, 649, 657, 745
TspDTI	ATGAA	3 cut(s)	16, 581, 670
Vha464I	CTTAAG	1 cut(s)	374
VpaK11BI	GGWCC	1 cut(s)	219
XapI	RAATTY	3 cut(s)	568, 677, 736
XceI	RCATGY	1 cut(s)	145
XspI	CTAG	2 cut(s)	438, 602

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.