Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0008947

Physical Location & Seq

Genomic Coordinates Forward (+)

9253252 .. 9257412

Gene Structure 4161 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G054100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGTCGTCAAAGAAACAAGCCATTTTCATATCTTCCCTCGTAATCCTCTGGTACTCATCAAACATTGGTGTTATTCTACTCAACAAGTTCTTGCTCTCAAACTATGGCTTCAGATTCCCAATCTTCCTCACAATGTGCCACATGGCTGCCTGCGCCATTCTCAGTTACATCTCCATTGTTTTCCTCAAGGTTGTGCCTTTGCAGACCCTCAAATCTAAGTCCCAGTTCGTCAAGATTGCAACTTTGAGCGTTGTCTTTTGTGGGTCTGTTGTGGGTGGCAATATTTCACTCAGATACCTTGCGGTGTCGTTTAATCAGGCTGTCGGTGCAACGACACCGTTTTTCACTGCCCTTTTTGCGTATTTGGCGACCCTTAAGAGGGAGGCTTGGGTCACATATGCTGCTCTTGTGCCTGTTGTTACTGGAGTGGTGATTGCCAGTGGGGGTGAGCCAAGTTTTCACTTCTTTGGGTTTGTTATGTGCATTAGTGCAACTGCTGCAAGGGCCTTTAAGTCTGTTCTTCAGGGTATCCTACTTTCTTCTGAAGGGGAAAAGTTGAACTCCATGAATTTGCTGCTGTATATGTCTCCAATTGCTATTCTAGTGTTGTTGCCTGCTGCACTTATAATGGAGCCCAATGTCGTAGATGACACTCTGTCACTTGGAAGAGAGCATAAATTCATGTGGTTACTTCTTTTGGTTAATTCAGTAATGGCGTATTCTGCTAATTTGTCAAATTTCTTGGTGACCAAACATACAAGTGCATTAACACTTCAGGTATTAGGCAATGCAAAAGGTGCTGTGGCTGTTGTTATCTCAATTCTTCTTTTCAAGAATCCTGTCACTGTTATCGGTATTGGTGGTTACATGATAACTGTTGCGGGAGTTGTTGCTTACGGAGAAGCAAAACGGAGGTTTAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0007275 GO:0008150 GO:0008152 GO:0009791 GO:0009987 GO:0010154 GO:0010191 GO:0010214 GO:0012505 GO:0015780 GO:0015931 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048359 GO:0048608 GO:0048731 GO:0048856 GO:0051179 GO:0051234 GO:0055085 GO:0061458 GO:0071702 GO:0071705 GO:1901264

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

308

Amino Acids

33.2

Weight (kDa)

9.79

Isoelectric Point (pI)

38.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008947)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10290 AT5G04160
fragaria_vesca	FvH4_6g24460 FvH4_6g24460 FvH4_6g24460 FvH4_6g24460 FvH4_6g24460
malus_domestica	MD12G1081800.v1.1 MD14G1077100.v1.1
prunus_persica	Prupe.7G054100_v2.0.a1 Prupe.7G054100_v2.0.a1
pyrus_communis	pycom12g06780 pycom14g06570
rosa_chinensis	RchiOBHm_Chr3g0483441
rosa_laevigata	RLG00000023279
rosa_multiflora	Rmu_sc0007722.1_g000006 Rmu_sc0007793.1_g000019
rosa_roxburghii	Rroxscaffold_6G00398300
rosa_rugosa	Rorug03G0205900
rosa_samantha	Rh3BG291800 Rh3CG288800
rosa_wichuraiana	Rw3G023000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	626
AciI	CCGC	2 cut(s)	302, 881
AcsI	RAATTY	3 cut(s)	568, 677, 736
AcuI	CTGAAG	4 cut(s)	94, 506, 564, 758
AdeI	CACNNNGTG	1 cut(s)	135
AfaI	GTAC	1 cut(s)	53
AfiI	CCNNNNNNNGG	2 cut(s)	378, 379
AflII	CTTAAG	1 cut(s)	374
AgsI	TTSAA	2 cut(s)	559, 832
AhdI	GACNNNNNGTC	1 cut(s)	655
Alw26I	GTCTC	1 cut(s)	591
AoxI	GGCC	1 cut(s)	504
ApeKI	GCWGC	5 cut(s)	146, 401, 497, 574, 617
ApoI	RAATTY	3 cut(s)	568, 677, 736
AspLEI	GCGC	1 cut(s)	155
AspS9I	GGNCC	1 cut(s)	504
AsuHPI	GGTGA	3 cut(s)	442, 458, 757
BanII	GRGCYC	1 cut(s)	636
BbvI	GCAGC	5 cut(s)	133, 388, 484, 561, 604
BciVI	GTATCC	1 cut(s)	539
BcoDI	GTCTC	1 cut(s)	591
BfaI	CTAG	1 cut(s)	602
BfrI	CTTAAG	1 cut(s)	374
BfuI	GTATCC	1 cut(s)	539
BisI	GCNGC	5 cut(s)	147, 402, 498, 575, 618
BlsI	GCNGC	5 cut(s)	148, 403, 499, 576, 619
BmeRI	GACNNNNNGTC	1 cut(s)	655
BmgT120I	GGNCC	1 cut(s)	504
BmiI	GGNNCC	1 cut(s)	633
BmrI	ACTGGG	1 cut(s)	217
BmuI	ACTGGG	1 cut(s)	217
BpmI	CTGGAG	1 cut(s)	444
BpuEI	CTTGAG	1 cut(s)	170
Bsc4I	CCNNNNNNNGG	2 cut(s)	378, 379
Bse1I	ACTGG	3 cut(s)	223, 427, 438
Bse3DI	GCAATG	1 cut(s)	793
BseLI	CCNNNNNNNGG	2 cut(s)	378, 379
BseMI	GCAATG	1 cut(s)	793
BseMII	CTCAG	2 cut(s)	175, 304
BseNI	ACTGG	3 cut(s)	223, 427, 438
BseXI	GCAGC	5 cut(s)	133, 388, 484, 561, 604
BsgI	GTGCAG	1 cut(s)	603
BshFI	GGCC	1 cut(s)	506
BslFI	GGGAC	1 cut(s)	205
BslI	CCNNNNNNNGG	2 cut(s)	378, 379
BsmAI	GTCTC	1 cut(s)	591
BsmFI	GGGAC	1 cut(s)	205
BsnI	GGCC	1 cut(s)	506
Bsp1286I	GDGCHC	1 cut(s)	636
BspACI	CCGC	2 cut(s)	302, 881
BspANI	GGCC	1 cut(s)	506
BspCNI	CTCAG	2 cut(s)	174, 303
BspLI	GGNNCC	1 cut(s)	633
BspTI	CTTAAG	1 cut(s)	374
BsrDI	GCAATG	1 cut(s)	793
BsrI	ACTGG	3 cut(s)	223, 427, 438
Bst4CI	ACNGT	3 cut(s)	339, 847, 877
Bst6I	CTCTTC	1 cut(s)	661
BstAFI	CTTAAG	1 cut(s)	374
BstAPI	GCANNNNNTGC	2 cut(s)	497, 797
BstC8I	GCNNGC	2 cut(s)	151, 615
BstDEI	CTNAG	3 cut(s)	161, 216, 290
BstEII	GGTNACC	1 cut(s)	745
BstHHI	GCGC	1 cut(s)	155
BstMAI	GTCTC	1 cut(s)	591
BstMWI	GCNNNNNNNGC	8 cut(s)	152, 326, 356, 365, 497, 503, 722, 797
BstPI	GGTNACC	1 cut(s)	745
BstV1I	GCAGC	5 cut(s)	133, 388, 484, 561, 604
BsuI	GTATCC	1 cut(s)	539
BsuRI	GGCC	1 cut(s)	506
BtsI	GCAGTG	1 cut(s)	345
BtsIMutI	CAGTG	3 cut(s)	345, 445, 843
Cac8I	GCNNGC	2 cut(s)	151, 615
CfoI	GCGC	1 cut(s)	155
Cfr13I	GGNCC	1 cut(s)	504
Csp6I	GTAC	1 cut(s)	52
CviAII	CATG	4 cut(s)	142, 565, 682, 868
CviJI	RGCY	9 cut(s)	20, 108, 146, 320, 386, 451, 506, 634, 806
CviKI_1	RGCY	9 cut(s)	20, 108, 146, 320, 386, 451, 506, 634, 806
CviQI	GTAC	1 cut(s)	52
DdeI	CTNAG	3 cut(s)	161, 216, 290
DraIII	CACNNNGTG	1 cut(s)	135
DriI	GACNNNNNGTC	1 cut(s)	655
Eam1104I	CTCTTC	1 cut(s)	661
Eam1105I	GACNNNNNGTC	1 cut(s)	655
EarI	CTCTTC	1 cut(s)	661
Eco24I	GRGCYC	1 cut(s)	636
Eco57I	CTGAAG	4 cut(s)	94, 506, 564, 758
Eco91I	GGTNACC	1 cut(s)	745
EcoO109I	RGGNCCY	1 cut(s)	504
EcoO65I	GGTNACC	1 cut(s)	745
EcoT38I	GRGCYC	1 cut(s)	636
FaeI	CATG	4 cut(s)	145, 568, 685, 871
FaqI	GGGAC	1 cut(s)	205
FatI	CATG	4 cut(s)	141, 564, 681, 867
FauI	CCCGC	1 cut(s)	874
FauNDI	CATATG	1 cut(s)	397
Fnu4HI	GCNGC	5 cut(s)	147, 402, 498, 575, 618
FriOI	GRGCYC	1 cut(s)	636
Fsp4HI	GCNGC	5 cut(s)	147, 402, 498, 575, 618
FspBI	CTAG	1 cut(s)	602
GlaI	GCGC	1 cut(s)	154
GluI	GCNGC	5 cut(s)	147, 402, 498, 575, 618
GsuI	CTGGAG	1 cut(s)	444
HaeIII	GGCC	1 cut(s)	506
HhaI	GCGC	1 cut(s)	155
Hin1II	CATG	4 cut(s)	145, 568, 685, 871
Hin6I	GCGC	1 cut(s)	153
HinP1I	GCGC	1 cut(s)	153
HinfI	GANTC	2 cut(s)	114, 835
HphI	GGTGA	3 cut(s)	442, 458, 757
Hpy188I	TCNGA	3 cut(s)	113, 293, 544
Hpy188III	TCNNGA	2 cut(s)	232, 832
HpyAV	CCTTC	1 cut(s)	539
HpyCH4III	ACNGT	3 cut(s)	339, 847, 877
HpyCH4V	TGCA	9 cut(s)	202, 239, 329, 483, 491, 500, 620, 764, 791
HpyF10VI	GCNNNNNNNGC	8 cut(s)	152, 326, 356, 365, 497, 503, 722, 797
HpyF3I	CTNAG	3 cut(s)	161, 216, 290
Hsp92II	CATG	4 cut(s)	145, 568, 685, 871
HspAI	GCGC	1 cut(s)	153
LmnI	GCTCC	1 cut(s)	631
Lsp1109I	GCAGC	5 cut(s)	133, 388, 484, 561, 604
MaeI	CTAG	1 cut(s)	602
MaeIII	GTNAC	8 cut(s)	164, 391, 418, 657, 687, 745, 841, 863
MboII	GAAGA	6 cut(s)	24, 115, 512, 531, 678, 815
MfeI	CAATTG	1 cut(s)	591
MhlI	GDGCHC	1 cut(s)	636
MluCI	AATT	7 cut(s)	568, 591, 677, 703, 727, 736, 819
MnlI	CCTC	8 cut(s)	47, 56, 137, 194, 218, 372, 376, 906
MseI	TTAA	5 cut(s)	312, 375, 510, 702, 767
MslI	CAYNNNNRTG	1 cut(s)	759
MspCI	CTTAAG	1 cut(s)	374
MunI	CAATTG	1 cut(s)	591
MwoI	GCNNNNNNNGC	8 cut(s)	152, 326, 356, 365, 497, 503, 722, 797
NdeI	CATATG	1 cut(s)	397
NlaIII	CATG	4 cut(s)	145, 568, 685, 871
NlaIV	GGNNCC	1 cut(s)	633
NmuCI	GTSAC	4 cut(s)	391, 657, 745, 841
PfeI	GAWTC	2 cut(s)	114, 835
PkrI	GCNGC	5 cut(s)	148, 403, 499, 576, 619
PsiI	TTATAA	1 cut(s)	626
PspEI	GGTNACC	1 cut(s)	745
PspN4I	GGNNCC	1 cut(s)	633
PspPI	GGNCC	1 cut(s)	504
RsaI	GTAC	1 cut(s)	53
RsaNI	GTAC	1 cut(s)	52
RseI	CAYNNNNRTG	1 cut(s)	759
SaqAI	TTAA	5 cut(s)	312, 375, 510, 702, 767
SatI	GCNGC	5 cut(s)	147, 402, 498, 575, 618
Sau96I	GGNCC	1 cut(s)	504
SduI	GDGCHC	1 cut(s)	636
SetI	ASST	5 cut(s)	192, 300, 780, 799, 917
SmiMI	CAYNNNNRTG	1 cut(s)	759
SmlI	CTYRAG	2 cut(s)	185, 374
SmoI	CTYRAG	2 cut(s)	185, 374
Sse9I	AATT	7 cut(s)	568, 591, 677, 703, 727, 736, 819
SsiI	CCGC	2 cut(s)	302, 881
SspI	AATATT	1 cut(s)	283
SspMI	CTAG	1 cut(s)	602
TaaI	ACNGT	3 cut(s)	339, 847, 877
TasI	AATT	7 cut(s)	568, 591, 677, 703, 727, 736, 819
TfiI	GAWTC	2 cut(s)	114, 835
Tru1I	TTAA	5 cut(s)	312, 375, 510, 702, 767
Tru9I	TTAA	5 cut(s)	312, 375, 510, 702, 767
TscAI	CASTG	3 cut(s)	352, 445, 850
TseFI	GTSAC	4 cut(s)	391, 657, 745, 841
TseI	GCWGC	5 cut(s)	146, 401, 497, 574, 617
Tsp45I	GTSAC	4 cut(s)	391, 657, 745, 841
TspDTI	ATGAA	3 cut(s)	16, 581, 670
TspGWI	ACGGA	1 cut(s)	912
TspRI	CASTG	3 cut(s)	352, 445, 850
Vha464I	CTTAAG	1 cut(s)	374
XapI	RAATTY	3 cut(s)	568, 677, 736
XspI	CTAG	1 cut(s)	602

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.