Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0008947

Physical Location & Seq

Genomic Coordinates Forward (+)

20182016 .. 20186520

Gene Structure 4505 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00398300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGTCCTCAAAGAAACAAGCCATTTTCATCTCCTCCCTCGTAATCCTCTGGTACTCATCAAACATCGGTGTCCTCCTACTCAACAAGTTCCTACTCTCCAACTATGGCTTCAGATTCCCAATCTTCCTCACAATGTGCCACATGTCCGCCTGCGCCATTCTCAGCTACGTTTCCATCGTCTTCCTCAAGATTGTGCCTTTGCAGACCCTCAAATCCAGGTCCCAGTTCGTCAAGATCGCCACTTTGGGCATTGTCTTTTGTGGGTCTGTTGTGGGTGGCAACATTTCTCTCAGATACCTCGCTGTCTCGTTCAATCAGGCTGTCGGTGCTACGACGCCGTTTTTCACCGCCCTTTTTGCGTATTTGGCGACCCTTAAGAGGGAGGCTTGGGTTACCTACGCTGCTCTTGTGCCCGTTGTTACTGGAGTTGTGATTGCTAGTGGGGAATTTCTTGGTTCATGGCAGGGTGAGCCGAGTTTTCACTTCTTTGGATTTGTTATGTGCATTAGTGCAACTGCTGCAAGGGCATTTAAATCTGTTCTTCAGGGTATCCTACTTTCTTCTGACGGGGAAAAGCTGAACTCTATGAATTTGCTGCTTTATATGTCTCCAATTGCTATTCTAGTATTATTGCCTGCTGCACTTATTATGGAGCCCAATGTTGTAGAGGTATTAGGCAATGCAAAAGGTGCTGTGGCCGTTGTTATCTCAATTCTTTTATTCAAGAACCCTGTCACTGTTATCGGCATTGGTGGTTACATGATAACTGTTATGGGGGTTGTTGCTTATGGAGAAGCAAAGCGAAGATACATAATAGTTGTCCTACTTGATGCAACTGCTGACAATTCCATGAGTTGGTTACCTGATGAATCTGAATTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0007275 GO:0008150 GO:0008152 GO:0009791 GO:0009987 GO:0010154 GO:0010191 GO:0010214 GO:0012505 GO:0015780 GO:0015931 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048359 GO:0048608 GO:0048731 GO:0048856 GO:0051179 GO:0051234 GO:0055085 GO:0061458 GO:0071702 GO:0071705 GO:1901264

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

293

Amino Acids

31.7

Weight (kDa)

9.14

Isoelectric Point (pI)

43.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPT	PF03151	11 - 219	8.7e-28	Triose-phosphate Transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008947)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10290 AT5G04160
fragaria_vesca	FvH4_6g24460 FvH4_6g24460 FvH4_6g24460 FvH4_6g24460 FvH4_6g24460
malus_domestica	MD12G1081800.v1.1 MD14G1077100.v1.1
prunus_persica	Prupe.7G054100_v2.0.a1 Prupe.7G054100_v2.0.a1
pyrus_communis	pycom12g06780 pycom14g06570
rosa_chinensis	RchiOBHm_Chr3g0483441
rosa_laevigata	RLG00000023279
rosa_multiflora	Rmu_sc0007722.1_g000006 Rmu_sc0007793.1_g000019
rosa_roxburghii	Rroxscaffold_6G00398300
rosa_rugosa	Rorug03G0205900
rosa_samantha	Rh3BG291800 Rh3CG288800
rosa_wichuraiana	Rw3G023000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	855
AciI	CCGC	2 cut(s)	147, 348
AcoI	YGGCCR	1 cut(s)	696
AcsI	RAATTY	3 cut(s)	446, 589, 875
AcuI	CTGAAG	2 cut(s)	94, 527
AcyI	GRCGYC	1 cut(s)	335
AdeI	CACNNNGTG	1 cut(s)	135
AfaI	GTAC	1 cut(s)	53
AfiI	CCNNNNNNNGG	3 cut(s)	378, 379, 855
AflII	CTTAAG	1 cut(s)	374
AflIII	ACRYGT	1 cut(s)	141
AgsI	TTSAA	2 cut(s)	313, 724
AjnI	CCWGG	1 cut(s)	215
AjuI	GAANNNNNNNTTGG	2 cut(s)	92, 124
AluBI	AGCT	2 cut(s)	165, 577
AluI	AGCT	2 cut(s)	165, 577
Alw26I	GTCTC	2 cut(s)	310, 612
AoxI	GGCC	1 cut(s)	696
ApeKI	GCWGC	4 cut(s)	401, 518, 595, 638
ApoI	RAATTY	3 cut(s)	446, 589, 875
AspLEI	GCGC	1 cut(s)	155
AspS9I	GGNCC	1 cut(s)	219
AsuHPI	GGTGA	2 cut(s)	337, 479
AvaII	GGWCC	1 cut(s)	219
BaeGI	GKGCMC	1 cut(s)	414
BanII	GRGCYC	1 cut(s)	657
BbsI	GAAGAC	1 cut(s)	172
BbvI	GCAGC	4 cut(s)	388, 505, 582, 625
BccI	CCATC	1 cut(s)	182
BceAI	ACGGC	2 cut(s)	322, 683
BciT130I	CCWGG	1 cut(s)	217
BciVI	GTATCC	1 cut(s)	560
BcoDI	GTCTC	2 cut(s)	310, 612
BfaI	CTAG	2 cut(s)	438, 623
BfrI	CTTAAG	1 cut(s)	374
BfuI	GTATCC	1 cut(s)	560
BisI	GCNGC	4 cut(s)	402, 519, 596, 639
BlsI	GCNGC	4 cut(s)	403, 520, 597, 640
Bme1390I	CCNGG	1 cut(s)	217
Bme18I	GGWCC	1 cut(s)	219
BmgT120I	GGNCC	1 cut(s)	219
BmiI	GGNNCC	2 cut(s)	221, 654
BmrFI	CCNGG	1 cut(s)	217
BmrI	ACTGGG	1 cut(s)	217
BmsI	GCATC	1 cut(s)	820
BmuI	ACTGGG	1 cut(s)	217
BpiI	GAAGAC	1 cut(s)	172
BpmI	CTGGAG	1 cut(s)	444
BpuEI	CTTGAG	1 cut(s)	170
BsaHI	GRCGYC	1 cut(s)	335
Bsc4I	CCNNNNNNNGG	3 cut(s)	378, 379, 855
Bse1I	ACTGG	2 cut(s)	223, 427
Bse3DI	GCAATG	1 cut(s)	685
BseBI	CCWGG	1 cut(s)	217
BseLI	CCNNNNNNNGG	3 cut(s)	378, 379, 855
BseMI	GCAATG	1 cut(s)	685
BseMII	CTCAG	2 cut(s)	175, 304
BseNI	ACTGG	2 cut(s)	223, 427
BseRI	GAGGAG	1 cut(s)	22
BseSI	GKGCMC	1 cut(s)	414
BseXI	GCAGC	4 cut(s)	388, 505, 582, 625
BsgI	GTGCAG	1 cut(s)	624
BshFI	GGCC	1 cut(s)	698
BslFI	GGGAC	1 cut(s)	205
BslI	CCNNNNNNNGG	3 cut(s)	378, 379, 855
BsmAI	GTCTC	2 cut(s)	310, 612
BsmFI	GGGAC	1 cut(s)	205
BsnI	GGCC	1 cut(s)	698
Bsp1286I	GDGCHC	2 cut(s)	414, 657
Bsp143I	GATC	1 cut(s)	234
BspACI	CCGC	2 cut(s)	147, 348
BspANI	GGCC	1 cut(s)	698
BspCNI	CTCAG	2 cut(s)	174, 303
BspLI	GGNNCC	2 cut(s)	221, 654
BspTI	CTTAAG	1 cut(s)	374
BsrDI	GCAATG	1 cut(s)	685
BsrI	ACTGG	2 cut(s)	223, 427
BssMI	GATC	1 cut(s)	234
BssNI	GRCGYC	1 cut(s)	335
Bst2UI	CCWGG	1 cut(s)	217
Bst4CI	ACNGT	2 cut(s)	739, 769
BstACI	GRCGYC	1 cut(s)	335
BstAFI	CTTAAG	1 cut(s)	374
BstAPI	GCANNNNNTGC	2 cut(s)	518, 689
BstC8I	GCNNGC	2 cut(s)	151, 636
BstDEI	CTNAG	2 cut(s)	161, 290
BstEII	GGTNACC	2 cut(s)	391, 858
BstHHI	GCGC	1 cut(s)	155
BstKTI	GATC	1 cut(s)	237
BstMAI	GTCTC	2 cut(s)	310, 612
BstMBI	GATC	1 cut(s)	234
BstMWI	GCNNNNNNNGC	7 cut(s)	326, 356, 365, 469, 518, 524, 689
BstNI	CCWGG	1 cut(s)	217
BstNSI	RCATGY	1 cut(s)	145
BstPI	GGTNACC	2 cut(s)	391, 858
BstSCI	CCNGG	1 cut(s)	215
BstSLI	GKGCMC	1 cut(s)	414
BstV1I	GCAGC	4 cut(s)	388, 505, 582, 625
BstV2I	GAAGAC	1 cut(s)	172
BsuI	GTATCC	1 cut(s)	560
BsuRI	GGCC	1 cut(s)	698
BtsIMutI	CAGTG	1 cut(s)	735
Cac8I	GCNNGC	2 cut(s)	151, 636
CfoI	GCGC	1 cut(s)	155
Cfr13I	GGNCC	1 cut(s)	219
CseI	GACGC	1 cut(s)	343
Csp6I	GTAC	1 cut(s)	52
CviAII	CATG	4 cut(s)	142, 459, 760, 850
CviJI	RGCY	9 cut(s)	20, 108, 165, 320, 386, 472, 577, 655, 698
CviKI_1	RGCY	9 cut(s)	20, 108, 165, 320, 386, 472, 577, 655, 698
CviQI	GTAC	1 cut(s)	52
DdeI	CTNAG	2 cut(s)	161, 290
DpnI	GATC	1 cut(s)	236
DpnII	GATC	1 cut(s)	234
DraI	TTTAAA	1 cut(s)	532
DraIII	CACNNNGTG	1 cut(s)	135
EaeI	YGGCCR	1 cut(s)	696
EciI	GGCGGA	1 cut(s)	136
Eco24I	GRGCYC	1 cut(s)	657
Eco47I	GGWCC	1 cut(s)	219
Eco57I	CTGAAG	2 cut(s)	94, 527
Eco91I	GGTNACC	2 cut(s)	391, 858
EcoO109I	RGGNCCY	1 cut(s)	219
EcoO65I	GGTNACC	2 cut(s)	391, 858
EcoRI	GAATTC	1 cut(s)	875
EcoRII	CCWGG	1 cut(s)	215
EcoT38I	GRGCYC	1 cut(s)	657
FaeI	CATG	4 cut(s)	145, 462, 763, 853
FaqI	GGGAC	1 cut(s)	205
FatI	CATG	4 cut(s)	141, 458, 759, 849
Fnu4HI	GCNGC	4 cut(s)	402, 519, 596, 639
FriOI	GRGCYC	1 cut(s)	657
Fsp4HI	GCNGC	4 cut(s)	402, 519, 596, 639
FspBI	CTAG	2 cut(s)	438, 623
GlaI	GCGC	1 cut(s)	154
GluI	GCNGC	4 cut(s)	402, 519, 596, 639
GsuI	CTGGAG	1 cut(s)	444
HaeIII	GGCC	1 cut(s)	698
HgaI	GACGC	1 cut(s)	343
HhaI	GCGC	1 cut(s)	155
Hin1I	GRCGYC	1 cut(s)	335
Hin1II	CATG	4 cut(s)	145, 462, 763, 853
Hin6I	GCGC	1 cut(s)	153
HinP1I	GCGC	1 cut(s)	153
HinfI	GANTC	2 cut(s)	114, 869
HphI	GGTGA	2 cut(s)	337, 479
Hpy188I	TCNGA	4 cut(s)	113, 293, 565, 874
Hpy188III	TCNNGA	3 cut(s)	187, 232, 724
Hpy99I	CGWCG	1 cut(s)	337
HpyCH4III	ACNGT	2 cut(s)	739, 769
HpyCH4IV	ACGT	1 cut(s)	168
HpyCH4V	TGCA	7 cut(s)	202, 504, 512, 521, 641, 683, 833
HpyF10VI	GCNNNNNNNGC	7 cut(s)	326, 356, 365, 469, 518, 524, 689
HpyF3I	CTNAG	2 cut(s)	161, 290
HpySE526I	ACGT	1 cut(s)	168
Hsp92I	GRCGYC	1 cut(s)	335
Hsp92II	CATG	4 cut(s)	145, 462, 763, 853
HspAI	GCGC	1 cut(s)	153
Kzo9I	GATC	1 cut(s)	234
LmnI	GCTCC	1 cut(s)	652
Lsp1109I	GCAGC	4 cut(s)	388, 505, 582, 625
LweI	GCATC	1 cut(s)	820
MaeI	CTAG	2 cut(s)	438, 623
MaeII	ACGT	1 cut(s)	168
MaeIII	GTNAC	5 cut(s)	391, 418, 733, 755, 858
MalI	GATC	1 cut(s)	236
MboI	GATC	1 cut(s)	234
MboII	GAAGA	5 cut(s)	115, 172, 533, 552, 816
MfeI	CAATTG	1 cut(s)	612
MhlI	GDGCHC	2 cut(s)	414, 657
MluCI	AATT	6 cut(s)	446, 589, 612, 711, 844, 875
MmeI	TCCRAC	1 cut(s)	123
MseI	TTAA	2 cut(s)	375, 531
MspCI	CTTAAG	1 cut(s)	374
MspR9I	CCNGG	1 cut(s)	217
MunI	CAATTG	1 cut(s)	612
MvaI	CCWGG	1 cut(s)	217
MwoI	GCNNNNNNNGC	7 cut(s)	326, 356, 365, 469, 518, 524, 689
NdeII	GATC	1 cut(s)	234
NlaIII	CATG	4 cut(s)	145, 462, 763, 853
NlaIV	GGNNCC	2 cut(s)	221, 654
NmeAIII	GCCGAG	1 cut(s)	498
NmuCI	GTSAC	1 cut(s)	733
NspI	RCATGY	1 cut(s)	145
PciI	ACATGT	1 cut(s)	141
PcsI	WCGNNNNNNNCGW	1 cut(s)	174
PfeI	GAWTC	2 cut(s)	114, 869
PflMI	CCANNNNNTGG	1 cut(s)	855
PkrI	GCNGC	4 cut(s)	403, 520, 597, 640
PpuMI	RGGWCCY	1 cut(s)	219
PscI	ACATGT	1 cut(s)	141
Psp5II	RGGWCCY	1 cut(s)	219
Psp6I	CCWGG	1 cut(s)	215
PspEI	GGTNACC	2 cut(s)	391, 858
PspGI	CCWGG	1 cut(s)	215
PspN4I	GGNNCC	2 cut(s)	221, 654
PspPI	GGNCC	1 cut(s)	219
PspPPI	RGGWCCY	1 cut(s)	219
RsaI	GTAC	1 cut(s)	53
RsaNI	GTAC	1 cut(s)	52
SaqAI	TTAA	2 cut(s)	375, 531
SatI	GCNGC	4 cut(s)	402, 519, 596, 639
Sau3AI	GATC	1 cut(s)	234
Sau96I	GGNCC	1 cut(s)	219
ScrFI	CCNGG	1 cut(s)	217
SduI	GDGCHC	2 cut(s)	414, 657
SetI	ASST	9 cut(s)	167, 171, 221, 300, 398, 579, 672, 691, 865
SfaNI	GCATC	1 cut(s)	820
SinI	GGWCC	1 cut(s)	219
SmiI	ATTTAAAT	1 cut(s)	532
SmlI	CTYRAG	2 cut(s)	185, 374
SmoI	CTYRAG	2 cut(s)	185, 374
Sse9I	AATT	6 cut(s)	446, 589, 612, 711, 844, 875
SsiI	CCGC	2 cut(s)	147, 348
SspMI	CTAG	2 cut(s)	438, 623
StyD4I	CCNGG	1 cut(s)	215
SwaI	ATTTAAAT	1 cut(s)	532
TaaI	ACNGT	2 cut(s)	739, 769
TaiI	ACGT	1 cut(s)	171
TasI	AATT	6 cut(s)	446, 589, 612, 711, 844, 875
TfiI	GAWTC	2 cut(s)	114, 869
Tru1I	TTAA	2 cut(s)	375, 531
Tru9I	TTAA	2 cut(s)	375, 531
TscAI	CASTG	1 cut(s)	742
TseFI	GTSAC	1 cut(s)	733
TseI	GCWGC	4 cut(s)	401, 518, 595, 638
Tsp45I	GTSAC	1 cut(s)	733
TspDTI	ATGAA	4 cut(s)	16, 447, 602, 882
TspRI	CASTG	1 cut(s)	742
Van91I	CCANNNNNTGG	1 cut(s)	855
Vha464I	CTTAAG	1 cut(s)	374
VpaK11BI	GGWCC	1 cut(s)	219
XapI	RAATTY	3 cut(s)	446, 589, 875
XceI	RCATGY	1 cut(s)	145
XspI	CTAG	2 cut(s)	438, 623

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.