Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0008947

Physical Location & Seq

Genomic Coordinates Reverse (-)

18552232 .. 18555845

Gene Structure 3614 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g24460.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGTCGTCAAAGAAAGAAGCCATATTCATCTGCTCGCTCATAGTCCTCTGGTACTCATCAAACATCGGCGTCCTCCTACTCAACAAGTTCCTACTCTCCAACTACGGCTTCCGATTCCCAATCTTCCTCACAATGTGCCACATGTCCGCCTGCGCCATTCTCAGCTACATTTCCATCGTCTTCCTCAAGGTGGTCCCTCTCCAGACCCTCAAATCCAGGTCCCAGTTCCTCAAGATTGCCACTTTGAGTGTTGTTTTTTGTGGGTCCGTCGTCGGCGGCAACATTTCCCTCAGATACCTCGCCATCTCTTTTAATCAGGCCGTCGGTGCCACCACGCCGTTTTTCACTGCCCTTTTTGCCTATTTGGCTACCCTTAAAAGGGAGGCCTGGGTTACTTATGCTGCTCTTGTCCCTGTTGTCACTGGAGTTGTCATTGCTAGTGGGGGTGAGCCGAGTTTTCACTTCTTTGGCTTTGTTATGTGTATTAGTGCAACTGCTGCAAGGGCATTTAAATCTGTTCTTCAGGGTATCCTACTTTCTTCTGACGGGGAAAAGTTGAACTCTATGAATTTGCTGCTTTATATGTCACCAATTGCTATTCTTGTATTGTTGCCTGCTGCACTTATAATGGAGCCCAATGTTGTAGATGCCACTTTGTCACTTGGAAGGGAGCATAAATTCATGTGGTTACTTCTTTTGGTTAATTCAGTAATGGCCTATTCTGCTAATTTGTCAAATTTCTTGGTGACGAAGCATACAAGTGCGCTAACACTTCAGGTTTTAGGCAATGCTAAAGGTGCTGTGGCTGTTGTTATCTCAATTCTTTTATTCAAGAACCCTATCACTGTTATCGGCATTGGTGGTTACATGATAACTGTTATGGGGGTTGTTGCTTATGGAGAAGCAAAGCGAAGGTTTAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0007275 GO:0008150 GO:0008152 GO:0009791 GO:0009987 GO:0010154 GO:0010191 GO:0010214 GO:0012505 GO:0015780 GO:0015931 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048359 GO:0048608 GO:0048731 GO:0048856 GO:0051179 GO:0051234 GO:0055085 GO:0061458 GO:0071702 GO:0071705 GO:1901264

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

308

Amino Acids

33.31

Weight (kDa)

9.75

Isoelectric Point (pI)

38.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UAA	PF08449	7 - 300	1.4e-11	UAA transporter family
TPT	PF03151	11 - 299	3.1e-42	Triose-phosphate Transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008947)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10290 AT5G04160
fragaria_vesca	FvH4_6g24460 FvH4_6g24460 FvH4_6g24460 FvH4_6g24460 FvH4_6g24460
malus_domestica	MD12G1081800.v1.1 MD14G1077100.v1.1
prunus_persica	Prupe.7G054100_v2.0.a1 Prupe.7G054100_v2.0.a1
pyrus_communis	pycom12g06780 pycom14g06570
rosa_chinensis	RchiOBHm_Chr3g0483441
rosa_laevigata	RLG00000023279
rosa_multiflora	Rmu_sc0007722.1_g000006 Rmu_sc0007793.1_g000019
rosa_roxburghii	Rroxscaffold_6G00398300
rosa_rugosa	Rorug03G0205900
rosa_samantha	Rh3BG291800 Rh3CG288800
rosa_wichuraiana	Rw3G023000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	626
AccB1I	GGYRCC	1 cut(s)	326
AciI	CCGC	2 cut(s)	147, 276
AcsI	RAATTY	3 cut(s)	568, 677, 736
AcuI	CTGAAG	2 cut(s)	506, 758
AcyI	GRCGYC	1 cut(s)	69
AdeI	CACNNNGTG	1 cut(s)	135
AfaI	GTAC	1 cut(s)	53
AfiI	CCNNNNNNNGG	3 cut(s)	190, 378, 379
AflIII	ACRYGT	1 cut(s)	141
AgsI	TTSAA	2 cut(s)	559, 832
AjnI	CCWGG	2 cut(s)	215, 386
AjuI	GAANNNNNNNTTGG	2 cut(s)	92, 124
AluBI	AGCT	1 cut(s)	165
AluI	AGCT	1 cut(s)	165
AoxI	GGCC	3 cut(s)	318, 384, 714
ApeKI	GCWGC	4 cut(s)	401, 497, 574, 617
ApoI	RAATTY	3 cut(s)	568, 677, 736
AspLEI	GCGC	2 cut(s)	155, 766
AspS9I	GGNCC	3 cut(s)	193, 219, 264
AsuHPI	GGTGA	3 cut(s)	458, 579, 757
AvaII	GGWCC	3 cut(s)	193, 219, 264
BanI	GGYRCC	1 cut(s)	326
BanII	GRGCYC	1 cut(s)	636
BbsI	GAAGAC	1 cut(s)	172
BbvI	GCAGC	4 cut(s)	388, 484, 561, 604
BccI	CCATC	2 cut(s)	182, 311
BceAI	ACGGC	3 cut(s)	121, 305, 322
BciT130I	CCWGG	2 cut(s)	217, 388
BciVI	GTATCC	1 cut(s)	539
BfaI	CTAG	1 cut(s)	438
BfuI	GTATCC	1 cut(s)	539
BglI	GCCNNNNNGGC	1 cut(s)	365
BisI	GCNGC	5 cut(s)	277, 402, 498, 575, 618
BlsI	GCNGC	5 cut(s)	278, 403, 499, 576, 619
Bme1390I	CCNGG	2 cut(s)	217, 388
Bme18I	GGWCC	3 cut(s)	193, 219, 264
BmgT120I	GGNCC	3 cut(s)	193, 219, 264
BmiI	GGNNCC	5 cut(s)	195, 221, 265, 328, 633
BmrFI	CCNGG	2 cut(s)	217, 388
BmrI	ACTGGG	1 cut(s)	217
BmsI	GCATC	1 cut(s)	637
BmuI	ACTGGG	1 cut(s)	217
BpiI	GAAGAC	1 cut(s)	172
BpmI	CTGGAG	2 cut(s)	185, 444
BpuEI	CTTGAG	2 cut(s)	170, 215
BsaHI	GRCGYC	1 cut(s)	69
BsaJI	CCNNGG	1 cut(s)	387
Bsc4I	CCNNNNNNNGG	3 cut(s)	190, 378, 379
Bse1I	ACTGG	2 cut(s)	223, 427
Bse3DI	GCAATG	2 cut(s)	432, 793
BseBI	CCWGG	2 cut(s)	217, 388
BseDI	CCNNGG	1 cut(s)	387
BseLI	CCNNNNNNNGG	3 cut(s)	190, 378, 379
BseMI	GCAATG	2 cut(s)	432, 793
BseMII	CTCAG	2 cut(s)	175, 304
BseNI	ACTGG	2 cut(s)	223, 427
BseXI	GCAGC	4 cut(s)	388, 484, 561, 604
BsgI	GTGCAG	1 cut(s)	603
BshFI	GGCC	3 cut(s)	320, 386, 716
BshNI	GGYRCC	1 cut(s)	326
BslFI	GGGAC	3 cut(s)	179, 205, 395
BslI	CCNNNNNNNGG	3 cut(s)	190, 378, 379
BsmFI	GGGAC	3 cut(s)	179, 205, 395
BsnI	GGCC	3 cut(s)	320, 386, 716
Bsp1286I	GDGCHC	1 cut(s)	636
BspACI	CCGC	2 cut(s)	147, 276
BspANI	GGCC	3 cut(s)	320, 386, 716
BspCNI	CTCAG	2 cut(s)	174, 303
BspLI	GGNNCC	5 cut(s)	195, 221, 265, 328, 633
BspT107I	GGYRCC	1 cut(s)	326
BsrDI	GCAATG	2 cut(s)	432, 793
BsrI	ACTGG	2 cut(s)	223, 427
BssECI	CCNNGG	1 cut(s)	387
BssNI	GRCGYC	1 cut(s)	69
Bst2UI	CCWGG	2 cut(s)	217, 388
Bst4CI	ACNGT	2 cut(s)	847, 877
BstACI	GRCGYC	1 cut(s)	69
BstAPI	GCANNNNNTGC	1 cut(s)	497
BstC8I	GCNNGC	3 cut(s)	35, 151, 615
BstDEI	CTNAG	2 cut(s)	161, 290
BstHHI	GCGC	2 cut(s)	155, 766
BstMWI	GCNNNNNNNGC	7 cut(s)	326, 356, 365, 497, 503, 722, 797
BstNI	CCWGG	2 cut(s)	217, 388
BstNSI	RCATGY	1 cut(s)	145
BstSCI	CCNGG	2 cut(s)	215, 386
BstV1I	GCAGC	4 cut(s)	388, 484, 561, 604
BstV2I	GAAGAC	1 cut(s)	172
BsuI	GTATCC	1 cut(s)	539
BsuRI	GGCC	3 cut(s)	320, 386, 716
BtsI	GCAGTG	1 cut(s)	345
BtsIMutI	CAGTG	3 cut(s)	345, 420, 843
Cac8I	GCNNGC	3 cut(s)	35, 151, 615
CfoI	GCGC	2 cut(s)	155, 766
Cfr13I	GGNCC	3 cut(s)	193, 219, 264
CseI	GACGC	1 cut(s)	58
Csp6I	GTAC	1 cut(s)	52
CviAII	CATG	3 cut(s)	142, 682, 868
CviQI	GTAC	1 cut(s)	52
DdeI	CTNAG	2 cut(s)	161, 290
DraI	TTTAAA	1 cut(s)	511
DraIII	CACNNNGTG	1 cut(s)	135
EciI	GGCGGA	1 cut(s)	136
Eco147I	AGGCCT	1 cut(s)	386
Eco24I	GRGCYC	1 cut(s)	636
Eco47I	GGWCC	3 cut(s)	193, 219, 264
Eco57I	CTGAAG	2 cut(s)	506, 758
EcoO109I	RGGNCCY	1 cut(s)	219
EcoRII	CCWGG	2 cut(s)	215, 386
EcoT38I	GRGCYC	1 cut(s)	636
FaeI	CATG	3 cut(s)	145, 685, 871
FaqI	GGGAC	3 cut(s)	179, 205, 395
FatI	CATG	3 cut(s)	141, 681, 867
Fnu4HI	GCNGC	5 cut(s)	277, 402, 498, 575, 618
FriOI	GRGCYC	1 cut(s)	636
Fsp4HI	GCNGC	5 cut(s)	277, 402, 498, 575, 618
FspBI	CTAG	1 cut(s)	438
GlaI	GCGC	2 cut(s)	154, 765
GluI	GCNGC	5 cut(s)	277, 402, 498, 575, 618
GsuI	CTGGAG	2 cut(s)	185, 444
HaeIII	GGCC	3 cut(s)	320, 386, 716
HgaI	GACGC	1 cut(s)	58
HhaI	GCGC	2 cut(s)	155, 766
Hin1I	GRCGYC	1 cut(s)	69
Hin1II	CATG	3 cut(s)	145, 685, 871
Hin6I	GCGC	2 cut(s)	153, 764
HinP1I	GCGC	2 cut(s)	153, 764
HinfI	GANTC	1 cut(s)	114
HphI	GGTGA	3 cut(s)	458, 579, 757
Hpy188I	TCNGA	3 cut(s)	113, 293, 544
Hpy188III	TCNNGA	3 cut(s)	202, 232, 832
Hpy99I	CGWCG	3 cut(s)	272, 275, 326
HpyAV	CCTTC	2 cut(s)	660, 906
HpyCH4III	ACNGT	2 cut(s)	847, 877
HpyCH4V	TGCA	3 cut(s)	491, 500, 620
HpyF10VI	GCNNNNNNNGC	7 cut(s)	326, 356, 365, 497, 503, 722, 797
HpyF3I	CTNAG	2 cut(s)	161, 290
Hsp92I	GRCGYC	1 cut(s)	69
Hsp92II	CATG	3 cut(s)	145, 685, 871
HspAI	GCGC	2 cut(s)	153, 764
LmnI	GCTCC	2 cut(s)	631, 670
Lsp1109I	GCAGC	4 cut(s)	388, 484, 561, 604
LweI	GCATC	1 cut(s)	637
MaeI	CTAG	1 cut(s)	438
MaeIII	GTNAC	7 cut(s)	391, 418, 585, 657, 687, 745, 863
MboII	GAAGA	4 cut(s)	115, 172, 512, 531
MfeI	CAATTG	1 cut(s)	591
MhlI	GDGCHC	1 cut(s)	636
MluCI	AATT	7 cut(s)	568, 591, 677, 703, 727, 736, 819
MmeI	TCCRAC	1 cut(s)	123
MseI	TTAA	4 cut(s)	312, 375, 510, 702
MslI	CAYNNNNRTG	1 cut(s)	759
MspR9I	CCNGG	2 cut(s)	217, 388
MunI	CAATTG	1 cut(s)	591
MvaI	CCWGG	2 cut(s)	217, 388
MwoI	GCNNNNNNNGC	7 cut(s)	326, 356, 365, 497, 503, 722, 797
NlaIII	CATG	3 cut(s)	145, 685, 871
NlaIV	GGNNCC	5 cut(s)	195, 221, 265, 328, 633
NmeAIII	GCCGAG	1 cut(s)	477
NmuCI	GTSAC	4 cut(s)	418, 585, 657, 745
NspI	RCATGY	1 cut(s)	145
PceI	AGGCCT	1 cut(s)	386
PciI	ACATGT	1 cut(s)	141
PfeI	GAWTC	1 cut(s)	114
PkrI	GCNGC	5 cut(s)	278, 403, 499, 576, 619
PpuMI	RGGWCCY	1 cut(s)	219
PscI	ACATGT	1 cut(s)	141
PsiI	TTATAA	1 cut(s)	626
Psp5II	RGGWCCY	1 cut(s)	219
Psp6I	CCWGG	2 cut(s)	215, 386
PspGI	CCWGG	2 cut(s)	215, 386
PspN4I	GGNNCC	5 cut(s)	195, 221, 265, 328, 633
PspPI	GGNCC	3 cut(s)	193, 219, 264
PspPPI	RGGWCCY	1 cut(s)	219
RsaI	GTAC	1 cut(s)	53
RsaNI	GTAC	1 cut(s)	52
RseI	CAYNNNNRTG	1 cut(s)	759
SaqAI	TTAA	4 cut(s)	312, 375, 510, 702
SatI	GCNGC	5 cut(s)	277, 402, 498, 575, 618
Sau96I	GGNCC	3 cut(s)	193, 219, 264
ScrFI	CCNGG	2 cut(s)	217, 388
SduI	GDGCHC	1 cut(s)	636
SetI	ASST	7 cut(s)	167, 192, 221, 300, 780, 799, 917
SfaNI	GCATC	1 cut(s)	637
SinI	GGWCC	3 cut(s)	193, 219, 264
SmiI	ATTTAAAT	1 cut(s)	511
SmiMI	CAYNNNNRTG	1 cut(s)	759
SmlI	CTYRAG	2 cut(s)	185, 230
SmoI	CTYRAG	2 cut(s)	185, 230
Sse9I	AATT	7 cut(s)	568, 591, 677, 703, 727, 736, 819
SseBI	AGGCCT	1 cut(s)	386
SsiI	CCGC	2 cut(s)	147, 276
SspMI	CTAG	1 cut(s)	438
StuI	AGGCCT	1 cut(s)	386
StyD4I	CCNGG	2 cut(s)	215, 386
SwaI	ATTTAAAT	1 cut(s)	511
TaaI	ACNGT	2 cut(s)	847, 877
TasI	AATT	7 cut(s)	568, 591, 677, 703, 727, 736, 819
TauI	GCSGC	1 cut(s)	279
TfiI	GAWTC	1 cut(s)	114
Tru1I	TTAA	4 cut(s)	312, 375, 510, 702
Tru9I	TTAA	4 cut(s)	312, 375, 510, 702
TscAI	CASTG	3 cut(s)	352, 427, 850
TseFI	GTSAC	4 cut(s)	418, 585, 657, 745
TseI	GCWGC	4 cut(s)	401, 497, 574, 617
Tsp45I	GTSAC	4 cut(s)	418, 585, 657, 745
TspDTI	ATGAA	3 cut(s)	16, 581, 670
TspGWI	ACGGA	1 cut(s)	256
TspRI	CASTG	3 cut(s)	352, 427, 850
VpaK11BI	GGWCC	3 cut(s)	193, 219, 264
XapI	RAATTY	3 cut(s)	568, 677, 736
XceI	RCATGY	1 cut(s)	145
XspI	CTAG	1 cut(s)	438

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.