Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0008947

Physical Location & Seq

Genomic Coordinates Reverse (-)

6520516 .. 6523297

Gene Structure 2782 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g06570.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGTCGTCAAAGAAGCAAGCCATTTTCATATCATCCCTCATAATCCTCTGGTACTCATCCAACATCGGGGTCCTCCTACTCAACAAGTTCTTACTCTCCAACTATGGCTTCCGTTTCCCAATCTTCCTCACAATGTGCCACATGGCCGCCTGCGCAATTCTCAGCTACTTCTCCATCGTCTTCCTCAAGATTGTGCCTCTCCAGACCATCAAATCTAAGTCCCAGTTCGTCAAGATTGCCACTTTGAGCGTTGTCTTTTGTGGGTCGGTTGTGGGGGGCAACATTTCTCTCAGGTACCTTGCTGTGTCTTTCAATCAGGCTGTGGGTGCGACGACGCCGTTTTTCACCGCCCTGTTTGCGTATCTGGCGACCTTGAAGAGGGAGGCCTGGGTTACCTATGCTGCTCTTGTGCCTGTTGTTGCTGGGGTGGTGATTGCTAGTGGGGGCGAGCCAAGTTTTCACTTCTTTGGATTTGTTATGTGCATTAGTGCAACTGCTGCAAGGGCCTTTAAGTCTGTTCTTCAGGGCATTCTACTTTCTTCCGAAGGGGAGAAGTTGAACTCAATGAATTTGCTGCTGTACATGTCTCCGATTGCTATTCTAGTGTTGTTGCCTGCTGCACTTATAATGGAACCCAATGTCGTAGATGTCACTCTGTCACTTGGACGGGAGCATAAATTCATGTGGTTACTTCTTTTGGTTAATTCAGTAATGGCATATTCTGCTAATTTGTCAAATTTTTTGGTTACCAAACATACAAGTGCGTTAACGCTTCAGGTATTAGGCAATGCAAAAGGCGCTGTGGCTGTTGTTATCTCAATTCTTTTGTTCAAGAACCCTGTGACTGTTGTCGGCATTGCCGGTTACATGGTAACTGTTATGGGGGTCGTCGCTTATGGAGAAGCAAAACGGAGGTTCCGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0007275 GO:0008150 GO:0008152 GO:0009791 GO:0009987 GO:0010154 GO:0010191 GO:0010214 GO:0012505 GO:0015780 GO:0015931 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048359 GO:0048608 GO:0048731 GO:0048856 GO:0051179 GO:0051234 GO:0055085 GO:0061458 GO:0071702 GO:0071705 GO:1901264

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

308

Amino Acids

33.27

Weight (kDa)

9.86

Isoelectric Point (pI)

37.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008947)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10290 AT5G04160
fragaria_vesca	FvH4_6g24460 FvH4_6g24460 FvH4_6g24460 FvH4_6g24460 FvH4_6g24460
malus_domestica	MD12G1081800.v1.1 MD14G1077100.v1.1
prunus_persica	Prupe.7G054100_v2.0.a1 Prupe.7G054100_v2.0.a1
pyrus_communis	pycom12g06780 pycom14g06570
rosa_chinensis	RchiOBHm_Chr3g0483441
rosa_laevigata	RLG00000023279
rosa_multiflora	Rmu_sc0007722.1_g000006 Rmu_sc0007793.1_g000019
rosa_roxburghii	Rroxscaffold_6G00398300
rosa_rugosa	Rorug03G0205900
rosa_samantha	Rh3BG291800 Rh3CG288800
rosa_wichuraiana	Rw3G023000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	626
Acc16I	TGCGCA	1 cut(s)	154
Acc65I	GGTACC	1 cut(s)	294
AccB1I	GGYRCC	1 cut(s)	294
AciI	CCGC	2 cut(s)	147, 348
AcoI	YGGCCR	1 cut(s)	144
AcsI	RAATTY	3 cut(s)	568, 677, 736
AcuI	CTGAAG	2 cut(s)	506, 758
AcyI	GRCGYC	1 cut(s)	335
AdeI	CACNNNGTG	1 cut(s)	135
AfaI	GTAC	3 cut(s)	53, 296, 581
AfiI	CCNNNNNNNGG	2 cut(s)	66, 378
AflIII	ACRYGT	1 cut(s)	582
AgsI	TTSAA	4 cut(s)	313, 376, 559, 832
AjnI	CCWGG	1 cut(s)	386
AjuI	GAANNNNNNNTTGG	2 cut(s)	92, 124
AluBI	AGCT	1 cut(s)	165
AluI	AGCT	1 cut(s)	165
Alw26I	GTCTC	1 cut(s)	591
AoxI	GGCC	3 cut(s)	144, 384, 504
ApeKI	GCWGC	4 cut(s)	401, 497, 574, 617
ApoI	RAATTY	3 cut(s)	568, 677, 736
Asp718I	GGTACC	1 cut(s)	294
AspLEI	GCGC	2 cut(s)	155, 800
AspS9I	GGNCC	2 cut(s)	70, 504
AsuHPI	GGTGA	2 cut(s)	337, 442
AvaII	GGWCC	1 cut(s)	70
BanI	GGYRCC	1 cut(s)	294
BbsI	GAAGAC	1 cut(s)	172
BbvI	GCAGC	4 cut(s)	388, 484, 561, 604
BccI	CCATC	2 cut(s)	182, 215
BceAI	ACGGC	1 cut(s)	322
BciT130I	CCWGG	1 cut(s)	388
BcoDI	GTCTC	1 cut(s)	591
BfaI	CTAG	2 cut(s)	438, 602
BfoI	RGCGCY	1 cut(s)	801
BisI	GCNGC	5 cut(s)	147, 402, 498, 575, 618
BlsI	GCNGC	5 cut(s)	148, 403, 499, 576, 619
Bme1390I	CCNGG	1 cut(s)	388
Bme18I	GGWCC	1 cut(s)	70
BmgT120I	GGNCC	2 cut(s)	70, 504
BmiI	GGNNCC	4 cut(s)	71, 296, 633, 917
BmrFI	CCNGG	1 cut(s)	388
BmrI	ACTGGG	1 cut(s)	217
BmuI	ACTGGG	1 cut(s)	217
BoxI	GACNNNNGTC	1 cut(s)	848
BpiI	GAAGAC	1 cut(s)	172
BpmI	CTGGAG	1 cut(s)	185
BpuEI	CTTGAG	1 cut(s)	170
BsaHI	GRCGYC	1 cut(s)	335
BsaJI	CCNNGG	1 cut(s)	387
Bsc4I	CCNNNNNNNGG	2 cut(s)	66, 378
Bse118I	RCCGGY	1 cut(s)	860
Bse1I	ACTGG	1 cut(s)	223
Bse3DI	GCAATG	2 cut(s)	793, 855
BseBI	CCWGG	1 cut(s)	388
BseDI	CCNNGG	1 cut(s)	387
BseGI	GGATG	2 cut(s)	32, 56
BseLI	CCNNNNNNNGG	2 cut(s)	66, 378
BseMI	GCAATG	2 cut(s)	793, 855
BseMII	CTCAG	2 cut(s)	175, 304
BseNI	ACTGG	1 cut(s)	223
BseXI	GCAGC	4 cut(s)	388, 484, 561, 604
BseYI	CCCAGC	1 cut(s)	422
BsgI	GTGCAG	1 cut(s)	603
BshFI	GGCC	3 cut(s)	146, 386, 506
BshNI	GGYRCC	1 cut(s)	294
BsiSI	CCGG	1 cut(s)	861
BslFI	GGGAC	1 cut(s)	205
BslI	CCNNNNNNNGG	2 cut(s)	66, 378
BsmAI	GTCTC	1 cut(s)	591
BsmFI	GGGAC	1 cut(s)	205
BsmI	GAATGC	1 cut(s)	528
BsnI	GGCC	3 cut(s)	146, 386, 506
Bsp1407I	TGTACA	1 cut(s)	579
BspACI	CCGC	2 cut(s)	147, 348
BspANI	GGCC	3 cut(s)	146, 386, 506
BspCNI	CTCAG	2 cut(s)	174, 303
BspLI	GGNNCC	4 cut(s)	71, 296, 633, 917
BspT107I	GGYRCC	1 cut(s)	294
BsrDI	GCAATG	2 cut(s)	793, 855
BsrFI	RCCGGY	1 cut(s)	860
BsrGI	TGTACA	1 cut(s)	579
BsrI	ACTGG	1 cut(s)	223
BssAI	RCCGGY	1 cut(s)	860
BssECI	CCNNGG	1 cut(s)	387
BssNI	GRCGYC	1 cut(s)	335
Bst2UI	CCWGG	1 cut(s)	388
Bst4CI	ACNGT	2 cut(s)	847, 877
Bst6I	CTCTTC	1 cut(s)	371
BstACI	GRCGYC	1 cut(s)	335
BstAPI	GCANNNNNTGC	2 cut(s)	497, 722
BstAUI	TGTACA	1 cut(s)	579
BstC8I	GCNNGC	4 cut(s)	18, 151, 449, 615
BstDEI	CTNAG	3 cut(s)	161, 216, 290
BstEII	GGTNACC	2 cut(s)	391, 745
BstENI	CCTNNNNNAGG	1 cut(s)	376
BstF5I	GGATG	2 cut(s)	32, 56
BstH2I	RGCGCY	1 cut(s)	801
BstHHI	GCGC	2 cut(s)	155, 800
BstMAI	GTCTC	1 cut(s)	591
BstMWI	GCNNNNNNNGC	8 cut(s)	152, 326, 356, 365, 497, 503, 722, 797
BstNI	CCWGG	1 cut(s)	388
BstNSI	RCATGY	1 cut(s)	586
BstPAI	GACNNNNGTC	1 cut(s)	848
BstPI	GGTNACC	2 cut(s)	391, 745
BstSCI	CCNGG	1 cut(s)	386
BstV1I	GCAGC	4 cut(s)	388, 484, 561, 604
BstV2I	GAAGAC	1 cut(s)	172
BsuRI	GGCC	3 cut(s)	146, 386, 506
BtsCI	GGATG	2 cut(s)	32, 56
Cac8I	GCNNGC	4 cut(s)	18, 151, 449, 615
CfoI	GCGC	2 cut(s)	155, 800
Cfr10I	RCCGGY	1 cut(s)	860
Cfr13I	GGNCC	2 cut(s)	70, 504
CseI	GACGC	1 cut(s)	343
Csp6I	GTAC	3 cut(s)	52, 295, 580
CviAII	CATG	4 cut(s)	142, 583, 682, 868
CviJI	RGCY	9 cut(s)	20, 108, 146, 165, 320, 386, 451, 506, 806
CviKI_1	RGCY	9 cut(s)	20, 108, 146, 165, 320, 386, 451, 506, 806
CviQI	GTAC	3 cut(s)	52, 295, 580
DdeI	CTNAG	3 cut(s)	161, 216, 290
DraIII	CACNNNGTG	1 cut(s)	135
EaeI	YGGCCR	1 cut(s)	144
Eam1104I	CTCTTC	1 cut(s)	371
EarI	CTCTTC	1 cut(s)	371
Eco147I	AGGCCT	1 cut(s)	386
Eco47I	GGWCC	1 cut(s)	70
Eco57I	CTGAAG	2 cut(s)	506, 758
Eco91I	GGTNACC	2 cut(s)	391, 745
EcoNI	CCTNNNNNAGG	1 cut(s)	376
EcoO109I	RGGNCCY	2 cut(s)	70, 504
EcoO65I	GGTNACC	2 cut(s)	391, 745
EcoRII	CCWGG	1 cut(s)	386
FaeI	CATG	4 cut(s)	145, 586, 685, 871
FaqI	GGGAC	1 cut(s)	205
FatI	CATG	4 cut(s)	141, 582, 681, 867
Fnu4HI	GCNGC	5 cut(s)	147, 402, 498, 575, 618
FokI	GGATG	2 cut(s)	19, 43
Fsp4HI	GCNGC	5 cut(s)	147, 402, 498, 575, 618
FspBI	CTAG	2 cut(s)	438, 602
FspI	TGCGCA	1 cut(s)	154
GlaI	GCGC	2 cut(s)	154, 799
GluI	GCNGC	5 cut(s)	147, 402, 498, 575, 618
GsaI	CCCAGC	1 cut(s)	426
GsuI	CTGGAG	1 cut(s)	185
HaeII	RGCGCY	1 cut(s)	801
HaeIII	GGCC	3 cut(s)	146, 386, 506
HapII	CCGG	1 cut(s)	861
HgaI	GACGC	1 cut(s)	343
HhaI	GCGC	2 cut(s)	155, 800
Hin1I	GRCGYC	1 cut(s)	335
Hin1II	CATG	4 cut(s)	145, 586, 685, 871
Hin6I	GCGC	2 cut(s)	153, 798
HinP1I	GCGC	2 cut(s)	153, 798
HincII	GTYRAC	1 cut(s)	768
HindII	GTYRAC	1 cut(s)	768
HpaI	GTTAAC	1 cut(s)	768
HpaII	CCGG	1 cut(s)	861
HphI	GGTGA	2 cut(s)	337, 442
Hpy166II	GTNNAC	1 cut(s)	768
Hpy188I	TCNGA	3 cut(s)	544, 591, 920
Hpy188III	TCNNGA	4 cut(s)	187, 202, 232, 832
Hpy8I	GTNNAC	1 cut(s)	768
Hpy99I	CGWCG	3 cut(s)	334, 337, 893
HpyAV	CCTTC	1 cut(s)	539
HpyCH4III	ACNGT	2 cut(s)	847, 877
HpyCH4V	TGCA	5 cut(s)	483, 491, 500, 620, 791
HpyF10VI	GCNNNNNNNGC	8 cut(s)	152, 326, 356, 365, 497, 503, 722, 797
HpyF3I	CTNAG	3 cut(s)	161, 216, 290
Hsp92I	GRCGYC	1 cut(s)	335
Hsp92II	CATG	4 cut(s)	145, 586, 685, 871
HspAI	GCGC	2 cut(s)	153, 798
KpnI	GGTACC	1 cut(s)	298
KspAI	GTTAAC	1 cut(s)	768
LmnI	GCTCC	1 cut(s)	670
Lsp1109I	GCAGC	4 cut(s)	388, 484, 561, 604
MaeI	CTAG	2 cut(s)	438, 602
MaeIII	GTNAC	8 cut(s)	391, 649, 657, 687, 745, 841, 863, 871
MboII	GAAGA	5 cut(s)	115, 172, 388, 512, 531
MluCI	AATT	7 cut(s)	156, 568, 677, 703, 727, 736, 819
MmeI	TCCRAC	2 cut(s)	84, 123
MnlI	CCTC	9 cut(s)	47, 56, 83, 137, 194, 207, 372, 376, 906
MseI	TTAA	3 cut(s)	510, 702, 767
MslI	CAYNNNNRTG	1 cut(s)	759
MspI	CCGG	1 cut(s)	861
MspR9I	CCNGG	1 cut(s)	388
Mva1269I	GAATGC	1 cut(s)	528
MvaI	CCWGG	1 cut(s)	388
MwoI	GCNNNNNNNGC	8 cut(s)	152, 326, 356, 365, 497, 503, 722, 797
NlaIII	CATG	4 cut(s)	145, 586, 685, 871
NlaIV	GGNNCC	4 cut(s)	71, 296, 633, 917
NmuCI	GTSAC	3 cut(s)	649, 657, 841
NsbI	TGCGCA	1 cut(s)	154
NspI	RCATGY	1 cut(s)	586
PceI	AGGCCT	1 cut(s)	386
PciI	ACATGT	1 cut(s)	582
PcsI	WCGNNNNNNNCGW	1 cut(s)	916
PctI	GAATGC	1 cut(s)	528
PkrI	GCNGC	5 cut(s)	148, 403, 499, 576, 619
PpuMI	RGGWCCY	1 cut(s)	70
PscI	ACATGT	1 cut(s)	582
PshAI	GACNNNNGTC	1 cut(s)	848
PsiI	TTATAA	1 cut(s)	626
Psp5II	RGGWCCY	1 cut(s)	70
Psp6I	CCWGG	1 cut(s)	386
PspEI	GGTNACC	2 cut(s)	391, 745
PspFI	CCCAGC	1 cut(s)	422
PspGI	CCWGG	1 cut(s)	386
PspN4I	GGNNCC	4 cut(s)	71, 296, 633, 917
PspPI	GGNCC	2 cut(s)	70, 504
PspPPI	RGGWCCY	1 cut(s)	70
RsaI	GTAC	3 cut(s)	53, 296, 581
RsaNI	GTAC	3 cut(s)	52, 295, 580
RseI	CAYNNNNRTG	1 cut(s)	759
SaqAI	TTAA	3 cut(s)	510, 702, 767
SatI	GCNGC	5 cut(s)	147, 402, 498, 575, 618
Sau96I	GGNCC	2 cut(s)	70, 504
ScrFI	CCNGG	1 cut(s)	388
SetI	ASST	7 cut(s)	167, 296, 300, 374, 398, 780, 917
SinI	GGWCC	1 cut(s)	70
SmiMI	CAYNNNNRTG	1 cut(s)	759
SmlI	CTYRAG	1 cut(s)	185
SmoI	CTYRAG	1 cut(s)	185
Sse9I	AATT	7 cut(s)	156, 568, 677, 703, 727, 736, 819
SseBI	AGGCCT	1 cut(s)	386
SsiI	CCGC	2 cut(s)	147, 348
SspMI	CTAG	2 cut(s)	438, 602
StuI	AGGCCT	1 cut(s)	386
StyD4I	CCNGG	1 cut(s)	386
TaaI	ACNGT	2 cut(s)	847, 877
TasI	AATT	7 cut(s)	156, 568, 677, 703, 727, 736, 819
TatI	WGTACW	1 cut(s)	579
TauI	GCSGC	1 cut(s)	149
Tru1I	TTAA	3 cut(s)	510, 702, 767
Tru9I	TTAA	3 cut(s)	510, 702, 767
TseFI	GTSAC	3 cut(s)	649, 657, 841
TseI	GCWGC	4 cut(s)	401, 497, 574, 617
Tsp45I	GTSAC	3 cut(s)	649, 657, 841
TspDTI	ATGAA	3 cut(s)	16, 581, 670
TspGWI	ACGGA	1 cut(s)	101
VpaK11BI	GGWCC	1 cut(s)	70
XagI	CCTNNNNNAGG	1 cut(s)	376
XapI	RAATTY	3 cut(s)	568, 677, 736
XceI	RCATGY	1 cut(s)	586
XspI	CTAG	2 cut(s)	438, 602

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.