Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008057

Physical Location & Seq

Genomic Coordinates Forward (+)

3320163 .. 3321724

Gene Structure 1562 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G10620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGGCACTGTACCGACCCCTTCTCTTGCATCATCCAACTTCTCCGTCTGTAACTACGTTTCTACGAAATTACCCCTCGAAACCGATCAAATTCTCCAGCCTGCCCTTCCTTCATCGCTGCCGTAAGTCTCGGGTCTCCTCCTCCTCCGCTCGGTGTTGTTCTTCCATGGAATCTCCTCCTGAAGGATACAGAAGAAATGTCGGCGTCTGCCTCATGAATTCTTCCAAAAAGATTTTCACTGCCTCGAGGTTGGATATTCCCAGTGCTTGGCAAATGCCTCAGGGTGGAATCGACGAAGGTGAAGATCCAAGAGTTGCAGTCATGAGAGAGCTTAAAGAAGAGACTGGAGTTCACTCTGCTGAGATTCTCGCTGAGGCACCTCACTGGATAACCTATGACTTCCCTCCTGATGTTAGGGAGAAGCTTAAGGTCCGATGGGGATCCGATTGGAAGGGTCAAGCACAGAAATGGTTTCTTCTGAAATTTACTGGGAAAGATGAAGAAATCAATCTTCTTGGCGATGGTACTGAGAAACCTGAGTTTGGTGAATGGTCCTGGACTTCTCCTGATCAAGTCGTTGAAAATGCAGTGGAGTTCAAGAAGCCAGTGTACAAGGAAGTCATGTCAGCTTTCGCTTCTCATCTCCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004551 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008893 GO:0009507 GO:0009536 GO:0009987 GO:0016462 GO:0016787 GO:0016788 GO:0016794 GO:0016817 GO:0016818 GO:0019637 GO:0034432 GO:0034641 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0055086 GO:0071704 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUDIX

Protein Analysis

216

Amino Acids

24.62

Weight (kDa)

8.3

Isoelectric Point (pI)

46.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NUDIX	PF00293	63 - 206	1.2e-22	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008057)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10620
fragaria_vesca	FvH4_1g22720 FvH4_1g22720 FvH4_1g22720 FvH4_1g25050 FvH4_1g25050
malus_domestica	MD03G1166000.v1.1 MD11G1185500.v1.1
prunus_persica	Prupe.4G266400_v2.0.a1
pyrus_communis	pycom12g08760
rosa_chinensis	RchiOBHm_Chr2g0117011
rosa_laevigata	RLG00000018319
rosa_multiflora	Rmu_sc0011969.1_g000001 Rmu_ssc0000238.1_g000007
rosa_roxburghii	Rroxscaffold_2G00126820
rosa_rugosa	Rorug02G0209500 Rorug02G0209500 Rorug02G0209500
rosa_samantha	Rh2AG265400 Rh2BG277200 Rh2DG272700 Rh2DG291700
rosa_wichuraiana	Rw0G019100 Rw2G020940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	244
AccB1I	GGYRCC	1 cut(s)	376
AccB7I	CCANNNNNTGG	1 cut(s)	267
AccBSI	CCGCTC	1 cut(s)	149
AciI	CCGC	1 cut(s)	147
AclWI	GGATC	3 cut(s)	299, 435, 448
AcsI	RAATTY	3 cut(s)	89, 217, 482
AcuI	CTGAAG	1 cut(s)	201
AcyI	GRCGYC	1 cut(s)	204
AfaI	GTAC	3 cut(s)	11, 526, 611
AfiI	CCNNNNNNNGG	5 cut(s)	150, 182, 267, 284, 542
AflII	CTTAAG	1 cut(s)	425
AgsI	TTSAA	2 cut(s)	581, 598
AjnI	CCWGG	1 cut(s)	554
AjuI	GAANNNNNNNTTGG	2 cut(s)	218, 250
AluBI	AGCT	3 cut(s)	331, 424, 629
AluI	AGCT	3 cut(s)	331, 424, 629
Alw26I	GTCTC	3 cut(s)	132, 139, 335
AlwI	GGATC	3 cut(s)	299, 435, 448
Ama87I	CYCGRG	2 cut(s)	129, 244
ApeKI	GCWGC	1 cut(s)	117
ApoI	RAATTY	3 cut(s)	89, 217, 482
AspS9I	GGNCC	2 cut(s)	430, 552
AsuHPI	GGTGA	2 cut(s)	311, 557
AvaI	CYCGRG	2 cut(s)	129, 244
AvaII	GGWCC	2 cut(s)	430, 552
AxyI	CCTNAGG	1 cut(s)	279
BamHI	GGATCC	1 cut(s)	440
BanI	GGYRCC	1 cut(s)	376
BarI	GAAGNNNNNNTAC	2 cut(s)	593, 625
BbvCI	CCTCAGC	1 cut(s)	372
BbvI	GCAGC	1 cut(s)	104
BccI	CCATC	2 cut(s)	429, 515
BceAI	ACGGC	1 cut(s)	105
BciT130I	CCWGG	1 cut(s)	556
BciVI	GTATCC	1 cut(s)	179
BclI	TGATCA	1 cut(s)	568
BcoDI	GTCTC	3 cut(s)	132, 139, 335
BfrI	CTTAAG	1 cut(s)	425
BfuI	GTATCC	1 cut(s)	179
BisI	GCNGC	1 cut(s)	118
BlsI	GCNGC	1 cut(s)	119
Bme1390I	CCNGG	1 cut(s)	556
Bme18I	GGWCC	2 cut(s)	430, 552
BmeT110I	CYCGRG	2 cut(s)	129, 244
BmgT120I	GGNCC	2 cut(s)	430, 552
BmiI	GGNNCC	2 cut(s)	378, 442
BmrFI	CCNGG	1 cut(s)	556
BmrI	ACTGGG	2 cut(s)	255, 498
BmsI	GCATC	1 cut(s)	37
BmuI	ACTGGG	2 cut(s)	255, 498
BpmI	CTGGAG	3 cut(s)	79, 366, 629
Bpu10I	CCTNAGC	1 cut(s)	372
BsaBI	GATNNNNATC	1 cut(s)	439
BsaHI	GRCGYC	1 cut(s)	204
BsaI	GGTCTC	1 cut(s)	139
BsaJI	CCNNGG	1 cut(s)	165
Bsc4I	CCNNNNNNNGG	5 cut(s)	150, 182, 267, 284, 542
Bse1I	ACTGG	6 cut(s)	261, 349, 389, 493, 605, 646
Bse21I	CCTNAGG	1 cut(s)	279
Bse8I	GATNNNNATC	1 cut(s)	439
BseBI	CCWGG	1 cut(s)	556
BseDI	CCNNGG	1 cut(s)	165
BseGI	GGATG	1 cut(s)	31
BseJI	GATNNNNATC	1 cut(s)	439
BseLI	CCNNNNNNNGG	5 cut(s)	150, 182, 267, 284, 542
BseMII	CTCAG	5 cut(s)	293, 351, 363, 519, 528
BseNI	ACTGG	6 cut(s)	261, 349, 389, 493, 605, 646
BseRI	GAGGAG	4 cut(s)	127, 130, 133, 165
BseXI	GCAGC	1 cut(s)	104
BshNI	GGYRCC	1 cut(s)	376
BsiHKCI	CYCGRG	2 cut(s)	129, 244
BslI	CCNNNNNNNGG	5 cut(s)	150, 182, 267, 284, 542
BsmAI	GTCTC	3 cut(s)	132, 139, 335
Bso31I	GGTCTC	1 cut(s)	139
BsoBI	CYCGRG	2 cut(s)	129, 244
Bsp1407I	TGTACA	1 cut(s)	609
Bsp143I	GATC	4 cut(s)	84, 304, 440, 568
Bsp19I	CCATGG	1 cut(s)	165
BspACI	CCGC	1 cut(s)	147
BspCNI	CTCAG	5 cut(s)	292, 352, 364, 520, 529
BspHI	TCATGA	2 cut(s)	213, 321
BspLI	GGNNCC	2 cut(s)	378, 442
BspPI	GGATC	3 cut(s)	299, 435, 448
BspT107I	GGYRCC	1 cut(s)	376
BspTI	CTTAAG	1 cut(s)	425
BspTNI	GGTCTC	1 cut(s)	139
BsrBI	CCGCTC	1 cut(s)	149
BsrGI	TGTACA	1 cut(s)	609
BsrI	ACTGG	6 cut(s)	261, 349, 389, 493, 605, 646
BssECI	CCNNGG	1 cut(s)	165
BssMI	GATC	4 cut(s)	84, 304, 440, 568
BssNI	GRCGYC	1 cut(s)	204
BssT1I	CCWWGG	1 cut(s)	165
Bst2UI	CCWGG	1 cut(s)	556
Bst4CI	ACNGT	1 cut(s)	9
Bst6I	CTCTTC	1 cut(s)	333
BstACI	GRCGYC	1 cut(s)	204
BstAFI	CTTAAG	1 cut(s)	425
BstAUI	TGTACA	1 cut(s)	609
BstC8I	GCNNGC	1 cut(s)	101
BstDEI	CTNAG	5 cut(s)	279, 360, 372, 528, 537
BstDSI	CCRYGG	1 cut(s)	165
BstENI	CCTNNNNNAGG	1 cut(s)	180
BstF5I	GGATG	1 cut(s)	31
BstKTI	GATC	4 cut(s)	87, 307, 443, 571
BstMAI	GTCTC	3 cut(s)	132, 139, 335
BstMBI	GATC	4 cut(s)	84, 304, 440, 568
BstNI	CCWGG	1 cut(s)	556
BstSCI	CCNGG	1 cut(s)	554
BstV1I	GCAGC	1 cut(s)	104
BstX2I	RGATCY	2 cut(s)	304, 440
BstYI	RGATCY	2 cut(s)	304, 440
Bsu36I	CCTNAGG	1 cut(s)	279
BsuI	GTATCC	1 cut(s)	179
BtgI	CCRYGG	1 cut(s)	165
BtgZI	GCGATG	2 cut(s)	98, 534
BtsCI	GGATG	1 cut(s)	31
BtsI	GCAGTG	2 cut(s)	237, 594
BtsIMutI	CAGTG	6 cut(s)	5, 237, 268, 382, 594, 612
Cac8I	GCNNGC	1 cut(s)	101
CciI	TCATGA	2 cut(s)	213, 321
Cfr13I	GGNCC	2 cut(s)	430, 552
CseI	GACGC	1 cut(s)	193
Csp6I	GTAC	3 cut(s)	10, 525, 610
CviAII	CATG	4 cut(s)	166, 214, 322, 622
CviJI	RGCY	5 cut(s)	99, 331, 424, 604, 629
CviKI_1	RGCY	5 cut(s)	99, 331, 424, 604, 629
CviQI	GTAC	3 cut(s)	10, 525, 610
DdeI	CTNAG	5 cut(s)	279, 360, 372, 528, 537
DpnI	GATC	4 cut(s)	86, 306, 442, 570
DpnII	GATC	4 cut(s)	84, 304, 440, 568
Eam1104I	CTCTTC	1 cut(s)	333
EarI	CTCTTC	1 cut(s)	333
Eco130I	CCWWGG	1 cut(s)	165
Eco31I	GGTCTC	1 cut(s)	139
Eco47I	GGWCC	2 cut(s)	430, 552
Eco57I	CTGAAG	1 cut(s)	201
Eco81I	CCTNAGG	1 cut(s)	279
Eco88I	CYCGRG	2 cut(s)	129, 244
EcoNI	CCTNNNNNAGG	1 cut(s)	180
EcoRI	GAATTC	1 cut(s)	217
EcoRII	CCWGG	1 cut(s)	554
EcoT14I	CCWWGG	1 cut(s)	165
ErhI	CCWWGG	1 cut(s)	165
FaeI	CATG	4 cut(s)	169, 217, 325, 625
FaiI	YATR	5 cut(s)	167, 215, 323, 396, 623
FatI	CATG	4 cut(s)	165, 213, 321, 621
FbaI	TGATCA	1 cut(s)	568
Fnu4HI	GCNGC	1 cut(s)	118
FokI	GGATG	1 cut(s)	18
Fsp4HI	GCNGC	1 cut(s)	118
GluI	GCNGC	1 cut(s)	118
GsuI	CTGGAG	3 cut(s)	79, 366, 629
HgaI	GACGC	1 cut(s)	193
Hin1I	GRCGYC	1 cut(s)	204
Hin1II	CATG	4 cut(s)	169, 217, 325, 625
HindIII	AAGCTT	1 cut(s)	422
HinfI	GANTC	3 cut(s)	170, 288, 364
HphI	GGTGA	2 cut(s)	311, 557
Hpy166II	GTNNAC	2 cut(s)	352, 610
Hpy188I	TCNGA	3 cut(s)	434, 445, 480
Hpy188III	TCNNGA	6 cut(s)	179, 214, 322, 407, 566, 598
Hpy8I	GTNNAC	2 cut(s)	352, 610
Hpy99I	CGWCG	1 cut(s)	296
HpyAV	CCTTC	6 cut(s)	29, 115, 119, 176, 290, 445
HpyCH4III	ACNGT	1 cut(s)	9
HpyCH4IV	ACGT	1 cut(s)	56
HpyCH4V	TGCA	3 cut(s)	28, 317, 587
HpyF3I	CTNAG	5 cut(s)	279, 360, 372, 528, 537
HpySE526I	ACGT	1 cut(s)	56
Hsp92I	GRCGYC	1 cut(s)	204
Hsp92II	CATG	4 cut(s)	169, 217, 325, 625
Ksp22I	TGATCA	1 cut(s)	568
Kzo9I	GATC	4 cut(s)	84, 304, 440, 568
Lsp1109I	GCAGC	1 cut(s)	104
LweI	GCATC	1 cut(s)	37
MaeII	ACGT	1 cut(s)	56
MaeIII	GTNAC	1 cut(s)	49
MalI	GATC	4 cut(s)	86, 306, 442, 570
MbiI	CCGCTC	1 cut(s)	149
MboI	GATC	4 cut(s)	84, 304, 440, 568
MboII	GAAGA	8 cut(s)	153, 204, 213, 314, 350, 467, 503, 512
MflI	RGATCY	2 cut(s)	304, 440
MluCI	AATT	4 cut(s)	67, 89, 217, 482
MmeI	TCCRAC	2 cut(s)	59, 231
MseI	TTAA	2 cut(s)	333, 426
MslI	CAYNNNNRTG	1 cut(s)	466
MspCI	CTTAAG	1 cut(s)	425
MspR9I	CCNGG	1 cut(s)	556
MvaI	CCWGG	1 cut(s)	556
NcoI	CCATGG	1 cut(s)	165
NdeII	GATC	4 cut(s)	84, 304, 440, 568
NlaIII	CATG	4 cut(s)	169, 217, 325, 625
NlaIV	GGNNCC	2 cut(s)	378, 442
PaeR7I	CTCGAG	1 cut(s)	244
PagI	TCATGA	2 cut(s)	213, 321
PfeI	GAWTC	3 cut(s)	170, 288, 364
PflMI	CCANNNNNTGG	1 cut(s)	267
PfoI	TCCNGGA	1 cut(s)	554
PkrI	GCNGC	1 cut(s)	119
Psp6I	CCWGG	1 cut(s)	554
PspGI	CCWGG	1 cut(s)	554
PspN4I	GGNNCC	2 cut(s)	378, 442
PspPI	GGNCC	2 cut(s)	430, 552
PspXI	VCTCGAGB	1 cut(s)	244
PsuI	RGATCY	2 cut(s)	304, 440
RsaI	GTAC	3 cut(s)	11, 526, 611
RsaNI	GTAC	3 cut(s)	10, 525, 610
RseI	CAYNNNNRTG	1 cut(s)	466
SaqAI	TTAA	2 cut(s)	333, 426
SatI	GCNGC	1 cut(s)	118
Sau3AI	GATC	4 cut(s)	84, 304, 440, 568
Sau96I	GGNCC	2 cut(s)	430, 552
ScrFI	CCNGG	1 cut(s)	556
SfaNI	GCATC	1 cut(s)	37
Sfr274I	CTCGAG	1 cut(s)	244
SinI	GGWCC	2 cut(s)	430, 552
SlaI	CTCGAG	1 cut(s)	244
SmiMI	CAYNNNNRTG	1 cut(s)	466
SmlI	CTYRAG	2 cut(s)	244, 425
SmoI	CTYRAG	2 cut(s)	244, 425
Sse9I	AATT	4 cut(s)	67, 89, 217, 482
SsiI	CCGC	1 cut(s)	147
StyD4I	CCNGG	1 cut(s)	554
StyI	CCWWGG	1 cut(s)	165
TaaI	ACNGT	1 cut(s)	9
TaiI	ACGT	1 cut(s)	59
TaqI	TCGA	3 cut(s)	77, 245, 291
TasI	AATT	4 cut(s)	67, 89, 217, 482
TatI	WGTACW	1 cut(s)	609
TfiI	GAWTC	3 cut(s)	170, 288, 364
Tru1I	TTAA	2 cut(s)	333, 426
Tru9I	TTAA	2 cut(s)	333, 426
TscAI	CASTG	6 cut(s)	12, 244, 268, 389, 594, 612
TseI	GCWGC	1 cut(s)	117
TspDTI	ATGAA	3 cut(s)	101, 230, 513
TspGWI	ACGGA	1 cut(s)	33
TspRI	CASTG	6 cut(s)	12, 244, 268, 389, 594, 612
Van91I	CCANNNNNTGG	1 cut(s)	267
Vha464I	CTTAAG	1 cut(s)	425
VpaK11BI	GGWCC	2 cut(s)	430, 552
XagI	CCTNNNNNAGG	1 cut(s)	180
XapI	RAATTY	3 cut(s)	89, 217, 482
XhoI	CTCGAG	1 cut(s)	244

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.