Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0008057

Physical Location & Seq

Genomic Coordinates Reverse (-)

22081990 .. 22084631

Gene Structure 2642 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1166000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGCTTAATTCTACACTCCACATTCCCTCTCCATCCTTCCCAACTTGCCCTCTTAATTCTAAACTCACTAAATTTTCGCACCTTGCACTCCTCCGCCGGAAATCCATTATTTATACCAGAACTAGACTCCTCTGTACACCCTCCCAATCTTCTTCTTCAACGGCAATGGAAGCCCCTCCCCAAGGTTATAGAAGGAATGTTGCCATCTGCCTCGTCAATGATTCTAAGATTTTTGCTGCTTCGAGGTTAGATATTCCCAGTGCGTGGCAAATGCCTCAGGTAAACTTGATCACAGTTTTGGTTGAATGTTTAGGGTTTTGGGGGGGTATTGATGAGGCTAAAGATTCAAGAAGTGCGGCCATCAGGGAAATAAGAGAAGAGACAGGTGTTAAATCAGCAGAAAGTCTTGCAGAGGCGTCAGTGGGGATCAGATTGGAAGTGCCAAGCACAGAAATGGTTAGTGTCGGCGATGGAAGTGAAAAACCTGAGTTTGGGGAGTGGTCATGGATGTCAACAGAACAAGTAGTTGATCTTGCTGTGGATTTTAAGAAGCCTGTTTATAAGGAAGTTCTTGCAGCGTTCACACCTCATCTTCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004551 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008893 GO:0009507 GO:0009536 GO:0009987 GO:0016462 GO:0016787 GO:0016788 GO:0016794 GO:0016817 GO:0016818 GO:0019637 GO:0034432 GO:0034641 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0055086 GO:0071704 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUDIX

Protein Analysis

200

Amino Acids

21.91

Weight (kDa)

6.32

Isoelectric Point (pI)

56.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NUDIX	PF00293	63 - 188	7.2e-09	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0008057)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10620
fragaria_vesca	FvH4_1g22720 FvH4_1g22720 FvH4_1g22720 FvH4_1g25050 FvH4_1g25050
malus_domestica	MD03G1166000.v1.1 MD11G1185500.v1.1
prunus_persica	Prupe.4G266400_v2.0.a1
pyrus_communis	pycom12g08760
rosa_chinensis	RchiOBHm_Chr2g0117011
rosa_laevigata	RLG00000018319
rosa_multiflora	Rmu_sc0011969.1_g000001 Rmu_ssc0000238.1_g000007
rosa_roxburghii	Rroxscaffold_2G00126820
rosa_rugosa	Rorug02G0209500 Rorug02G0209500 Rorug02G0209500
rosa_samantha	Rh2AG265400 Rh2BG277200 Rh2DG272700 Rh2DG291700
rosa_wichuraiana	Rw0G019100 Rw2G020940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	561
AccB7I	CCANNNNNTGG	1 cut(s)	264
AciI	CCGC	2 cut(s)	94, 356
AclWI	GGATC	1 cut(s)	434
AcoI	YGGCCR	1 cut(s)	357
AcsI	RAATTY	1 cut(s)	71
AcyI	GRCGYC	1 cut(s)	416
AfaI	GTAC	1 cut(s)	136
AfiI	CCNNNNNNNGG	3 cut(s)	182, 264, 491
AgsI	TTSAA	3 cut(s)	159, 305, 348
Alw26I	GTCTC	1 cut(s)	374
AlwI	GGATC	1 cut(s)	434
AoxI	GGCC	1 cut(s)	357
ApeKI	GCWGC	2 cut(s)	236, 575
ApoI	RAATTY	1 cut(s)	71
AxyI	CCTNAGG	1 cut(s)	276
BbvI	GCAGC	2 cut(s)	223, 587
BccI	CCATC	4 cut(s)	40, 212, 368, 464
BceAI	ACGGC	1 cut(s)	177
BclI	TGATCA	1 cut(s)	288
BcoDI	GTCTC	1 cut(s)	374
BfaI	CTAG	1 cut(s)	123
BisI	GCNGC	3 cut(s)	237, 357, 576
BlsI	GCNGC	3 cut(s)	238, 358, 577
BmrI	ACTGGG	1 cut(s)	252
BmuI	ACTGGG	1 cut(s)	252
BsaHI	GRCGYC	1 cut(s)	416
BsaJI	CCNNGG	1 cut(s)	181
Bsc4I	CCNNNNNNNGG	3 cut(s)	182, 264, 491
Bse1I	ACTGG	1 cut(s)	258
Bse21I	CCTNAGG	1 cut(s)	276
Bse3DI	GCAATG	1 cut(s)	171
BseDI	CCNNGG	1 cut(s)	181
BseGI	GGATG	2 cut(s)	32, 513
BseLI	CCNNNNNNNGG	3 cut(s)	182, 264, 491
BseMI	GCAATG	1 cut(s)	171
BseMII	CTCAG	2 cut(s)	290, 477
BseNI	ACTGG	1 cut(s)	258
BseRI	GAGGAG	2 cut(s)	80, 119
BseXI	GCAGC	2 cut(s)	223, 587
BshFI	GGCC	1 cut(s)	359
BsiSI	CCGG	1 cut(s)	97
BslI	CCNNNNNNNGG	3 cut(s)	182, 264, 491
BsmAI	GTCTC	1 cut(s)	374
BsnI	GGCC	1 cut(s)	359
Bsp1407I	TGTACA	1 cut(s)	134
Bsp143I	GATC	3 cut(s)	288, 426, 529
BspACI	CCGC	2 cut(s)	94, 356
BspANI	GGCC	1 cut(s)	359
BspCNI	CTCAG	2 cut(s)	289, 478
BspPI	GGATC	1 cut(s)	434
BsrDI	GCAATG	1 cut(s)	171
BsrGI	TGTACA	1 cut(s)	134
BsrI	ACTGG	1 cut(s)	258
BssECI	CCNNGG	1 cut(s)	181
BssMI	GATC	3 cut(s)	288, 426, 529
BssNI	GRCGYC	1 cut(s)	416
BssT1I	CCWWGG	1 cut(s)	181
Bst4CI	ACNGT	1 cut(s)	295
Bst6I	CTCTTC	1 cut(s)	372
BstACI	GRCGYC	1 cut(s)	416
BstAUI	TGTACA	1 cut(s)	134
BstDEI	CTNAG	3 cut(s)	225, 276, 486
BstENI	CCTNNNNNAGG	1 cut(s)	180
BstF5I	GGATG	2 cut(s)	32, 513
BstKTI	GATC	3 cut(s)	291, 429, 532
BstMAI	GTCTC	1 cut(s)	374
BstMBI	GATC	3 cut(s)	288, 426, 529
BstMWI	GCNNNNNNNGC	1 cut(s)	170
BstV1I	GCAGC	2 cut(s)	223, 587
Bsu36I	CCTNAGG	1 cut(s)	276
BsuRI	GGCC	1 cut(s)	359
BtgZI	GCGATG	1 cut(s)	483
BtsCI	GGATG	2 cut(s)	32, 513
BtsIMutI	CAGTG	2 cut(s)	265, 426
CseI	GACGC	1 cut(s)	405
Csp6I	GTAC	1 cut(s)	135
CviAII	CATG	1 cut(s)	504
CviJI	RGCY	4 cut(s)	173, 338, 359, 553
CviKI_1	RGCY	4 cut(s)	173, 338, 359, 553
CviQI	GTAC	1 cut(s)	135
DdeI	CTNAG	3 cut(s)	225, 276, 486
DpnI	GATC	3 cut(s)	290, 428, 531
DpnII	GATC	3 cut(s)	288, 426, 529
EaeI	YGGCCR	1 cut(s)	357
Eam1104I	CTCTTC	1 cut(s)	372
EarI	CTCTTC	1 cut(s)	372
EciI	GGCGGA	1 cut(s)	83
Eco130I	CCWWGG	1 cut(s)	181
Eco81I	CCTNAGG	1 cut(s)	276
EcoNI	CCTNNNNNAGG	1 cut(s)	180
EcoT14I	CCWWGG	1 cut(s)	181
ErhI	CCWWGG	1 cut(s)	181
FaeI	CATG	1 cut(s)	507
FaiI	YATR	5 cut(s)	114, 189, 505, 561, 598
FatI	CATG	1 cut(s)	503
FbaI	TGATCA	1 cut(s)	288
Fnu4HI	GCNGC	3 cut(s)	237, 357, 576
FokI	GGATG	2 cut(s)	19, 520
Fsp4HI	GCNGC	3 cut(s)	237, 357, 576
FspBI	CTAG	1 cut(s)	123
GluI	GCNGC	3 cut(s)	237, 357, 576
HaeIII	GGCC	1 cut(s)	359
HapII	CCGG	1 cut(s)	97
HgaI	GACGC	1 cut(s)	405
Hin1I	GRCGYC	1 cut(s)	416
Hin1II	CATG	1 cut(s)	507
HincII	GTYRAC	1 cut(s)	513
HindII	GTYRAC	1 cut(s)	513
HinfI	GANTC	3 cut(s)	126, 221, 344
HpaII	CCGG	1 cut(s)	97
Hpy166II	GTNNAC	4 cut(s)	137, 283, 513, 582
Hpy188I	TCNGA	1 cut(s)	431
Hpy188III	TCNNGA	1 cut(s)	348
Hpy8I	GTNNAC	4 cut(s)	137, 283, 513, 582
HpyAV	CCTTC	2 cut(s)	46, 186
HpyCH4III	ACNGT	1 cut(s)	295
HpyCH4V	TGCA	3 cut(s)	86, 410, 575
HpyF10VI	GCNNNNNNNGC	1 cut(s)	170
HpyF3I	CTNAG	3 cut(s)	225, 276, 486
Hsp92I	GRCGYC	1 cut(s)	416
Hsp92II	CATG	1 cut(s)	507
Ksp22I	TGATCA	1 cut(s)	288
Kzo9I	GATC	3 cut(s)	288, 426, 529
LpnPI	CCDG	8 cut(s)	110, 130, 263, 271, 349, 369, 498, 567
Lsp1109I	GCAGC	2 cut(s)	223, 587
MaeI	CTAG	1 cut(s)	123
MalI	GATC	3 cut(s)	290, 428, 531
MboI	GATC	3 cut(s)	288, 426, 529
MboII	GAAGA	5 cut(s)	141, 144, 147, 389, 584
MluCI	AATT	3 cut(s)	7, 55, 71
MlyI	GAGTC	1 cut(s)	120
MseI	TTAA	4 cut(s)	6, 54, 390, 546
MslI	CAYNNNNRTG	1 cut(s)	452
MspI	CCGG	1 cut(s)	97
MwoI	GCNNNNNNNGC	1 cut(s)	170
NdeII	GATC	3 cut(s)	288, 426, 529
NlaIII	CATG	1 cut(s)	507
PfeI	GAWTC	2 cut(s)	221, 344
PflMI	CCANNNNNTGG	1 cut(s)	264
PkrI	GCNGC	3 cut(s)	238, 358, 577
PleI	GAGTC	1 cut(s)	120
PpsI	GAGTC	1 cut(s)	120
PsiI	TTATAA	1 cut(s)	561
RsaI	GTAC	1 cut(s)	136
RsaNI	GTAC	1 cut(s)	135
RseI	CAYNNNNRTG	1 cut(s)	452
SaqAI	TTAA	4 cut(s)	6, 54, 390, 546
SatI	GCNGC	3 cut(s)	237, 357, 576
Sau3AI	GATC	3 cut(s)	288, 426, 529
SchI	GAGTC	1 cut(s)	120
SetI	ASST	7 cut(s)	84, 187, 248, 282, 388, 487, 589
SmiMI	CAYNNNNRTG	1 cut(s)	452
Sse9I	AATT	3 cut(s)	7, 55, 71
SsiI	CCGC	2 cut(s)	94, 356
SspMI	CTAG	1 cut(s)	123
StyI	CCWWGG	1 cut(s)	181
TaaI	ACNGT	1 cut(s)	295
TaqI	TCGA	1 cut(s)	242
TasI	AATT	3 cut(s)	7, 55, 71
TatI	WGTACW	1 cut(s)	134
TauI	GCSGC	1 cut(s)	359
TfiI	GAWTC	2 cut(s)	221, 344
Tru1I	TTAA	4 cut(s)	6, 54, 390, 546
Tru9I	TTAA	4 cut(s)	6, 54, 390, 546
TscAI	CASTG	2 cut(s)	265, 426
TseI	GCWGC	2 cut(s)	236, 575
TspRI	CASTG	2 cut(s)	265, 426
Van91I	CCANNNNNTGG	1 cut(s)	264
XagI	CCTNNNNNAGG	1 cut(s)	180
XapI	RAATTY	1 cut(s)	71
XspI	CTAG	1 cut(s)	123

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.