Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011969.1

Orthogroup ID

OG0008057

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2745

Gene Structure 2745 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011969.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 734 bp

ctctctctcatcctcctctttcaagattcgcagtggcgcagagttttctcacacagcaaggacaagttgttctgataaggaagcatttactggctgttctcatcaagcctacaattgtattgccatcgtcctcaagctgccgtcctaaactagctaagttcgcacagctgtcactcgtttactcgaaaccaactatttatactagagtgcgccgtgcctcctcctattcttcatcagcatcctcatcaatggaagcccctcccgaaggttacagaaggaatgttggtatctgcctcatcaatgattcaaagaagatttttgctgcttcaaggttagatgtacctgattcttggcaaatgccgcaaggtggcattgatgaaggcgaagacccaagaactgcagccatcagggaattaagagaagagacaggagttcagtcagccgaaattcttgcggagacacctcattggttaacctatgatttcccaccacaagttagggcaaaacttcagaaacagtggggatcagattggaagggccaagcacagaagtggtttctttttcagttcactgggaaggttgaagaagtcaatcttctgggtgatggcagtgaaaaacctgagtttggcgagtggtcatggataacaccagaacaagtagttgatcttgctgttgattttaagaagcctgtttacaaagaagtttttgcagttttcgcaccctattttcagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004551 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008893 GO:0009507 GO:0009536 GO:0009987 GO:0016462 GO:0016787 GO:0016788 GO:0016794 GO:0016817 GO:0016818 GO:0019637 GO:0034432 GO:0034641 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0055086 GO:0071704 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUDIX

Protein Analysis

243

Amino Acids

27.39

Weight (kDa)

8.78

Isoelectric Point (pI)

42.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008057)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10620
fragaria_vesca	FvH4_1g22720 FvH4_1g22720 FvH4_1g22720 FvH4_1g25050 FvH4_1g25050
malus_domestica	MD03G1166000.v1.1 MD11G1185500.v1.1
prunus_persica	Prupe.4G266400_v2.0.a1
pyrus_communis	pycom12g08760
rosa_chinensis	RchiOBHm_Chr2g0117011
rosa_laevigata	RLG00000018319
rosa_multiflora	Rmu_sc0011969.1_g000001 Rmu_ssc0000238.1_g000007
rosa_roxburghii	Rroxscaffold_2G00126820
rosa_rugosa	Rorug02G0209500 Rorug02G0209500 Rorug02G0209500
rosa_samantha	Rh2AG265400 Rh2BG277200 Rh2DG272700 Rh2DG291700
rosa_wichuraiana	Rw0G019100 Rw2G020940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	361, 454
AclWI	GGATC	1 cut(s)	531
AcsI	RAATTY	1 cut(s)	446
AcuI	CTGAAG	1 cut(s)	493
AfaI	GTAC	1 cut(s)	341
AfiI	CCNNNNNNNGG	3 cut(s)	265, 367, 625
AgsI	TTSAA	4 cut(s)	23, 308, 329, 583
AleI	CACNNNNGTG	1 cut(s)	549
AloI	GAACNNNNNNTCC	2 cut(s)	53, 85
AluBI	AGCT	3 cut(s)	137, 154, 168
AluI	AGCT	3 cut(s)	137, 154, 168
Alw26I	GTCTC	2 cut(s)	418, 451
AlwI	GGATC	1 cut(s)	531
AoxI	GGCC	1 cut(s)	537
ApeKI	GCWGC	3 cut(s)	137, 322, 400
ApoI	RAATTY	1 cut(s)	446
AspLEI	GCGC	2 cut(s)	39, 212
AspS9I	GGNCC	1 cut(s)	537
AsuHPI	GGTGA	1 cut(s)	613
BarI	GAAGNNNNNNTAC	2 cut(s)	676, 708
BbsI	GAAGAC	1 cut(s)	392
BbvI	GCAGC	3 cut(s)	124, 309, 412
BccI	CCATC	3 cut(s)	132, 412, 598
BceAI	ACGGC	2 cut(s)	125, 197
BcgI	CGANNNNNNTGC	2 cut(s)	433, 467
BcoDI	GTCTC	2 cut(s)	418, 451
BfaI	CTAG	2 cut(s)	151, 203
BfmI	CTRYAG	1 cut(s)	398
BisI	GCNGC	4 cut(s)	138, 323, 361, 401
BlsI	GCNGC	4 cut(s)	139, 324, 362, 402
BmgT120I	GGNCC	1 cut(s)	537
BmrI	ACTGGG	1 cut(s)	581
BmsI	GCATC	1 cut(s)	247
BmuI	ACTGGG	1 cut(s)	581
BpiI	GAAGAC	1 cut(s)	392
BpuEI	CTTGAG	1 cut(s)	117
Bsc4I	CCNNNNNNNGG	3 cut(s)	265, 367, 625
Bse1I	ACTGG	2 cut(s)	95, 576
BseGI	GGATG	2 cut(s)	9, 238
BseLI	CCNNNNNNNGG	3 cut(s)	265, 367, 625
BseMII	CTCAG	1 cut(s)	611
BseNI	ACTGG	2 cut(s)	95, 576
BseRI	GAGGAG	2 cut(s)	5, 210
BseXI	GCAGC	3 cut(s)	124, 309, 412
BshFI	GGCC	1 cut(s)	539
BslI	CCNNNNNNNGG	3 cut(s)	265, 367, 625
BsmAI	GTCTC	2 cut(s)	418, 451
BsnI	GGCC	1 cut(s)	539
Bsp143I	GATC	2 cut(s)	523, 663
BspACI	CCGC	2 cut(s)	361, 454
BspANI	GGCC	1 cut(s)	539
BspCNI	CTCAG	1 cut(s)	612
BspMAI	CTGCAG	1 cut(s)	402
BspPI	GGATC	1 cut(s)	531
BsrI	ACTGG	2 cut(s)	95, 576
BssMI	GATC	2 cut(s)	523, 663
Bst4CI	ACNGT	1 cut(s)	518
Bst6I	CTCTTC	1 cut(s)	416
BstDEI	CTNAG	2 cut(s)	155, 620
BstENI	CCTNNNNNAGG	1 cut(s)	263
BstF5I	GGATG	2 cut(s)	9, 238
BstHHI	GCGC	2 cut(s)	39, 212
BstKTI	GATC	2 cut(s)	526, 666
BstMAI	GTCTC	2 cut(s)	418, 451
BstMBI	GATC	2 cut(s)	523, 663
BstMWI	GCNNNNNNNGC	3 cut(s)	160, 360, 715
BstSFI	CTRYAG	1 cut(s)	398
BstV1I	GCAGC	3 cut(s)	124, 309, 412
BstV2I	GAAGAC	1 cut(s)	392
BsuRI	GGCC	1 cut(s)	539
BtsCI	GGATG	2 cut(s)	9, 238
BtsI	GCAGTG	2 cut(s)	38, 615
BtsIMutI	CAGTG	4 cut(s)	38, 523, 569, 615
CfoI	GCGC	2 cut(s)	39, 212
Cfr13I	GGNCC	1 cut(s)	537
Csp6I	GTAC	1 cut(s)	340
CviAII	CATG	1 cut(s)	638
CviQI	GTAC	1 cut(s)	340
DdeI	CTNAG	2 cut(s)	155, 620
DpnI	GATC	2 cut(s)	525, 665
DpnII	GATC	2 cut(s)	523, 663
Eam1104I	CTCTTC	1 cut(s)	416
EarI	CTCTTC	1 cut(s)	416
Eco57I	CTGAAG	1 cut(s)	493
EcoNI	CCTNNNNNAGG	1 cut(s)	263
FaeI	CATG	1 cut(s)	641
FaiI	YATR	3 cut(s)	200, 479, 639
FalI	AAGNNNNNCTT	2 cut(s)	578, 610
FatI	CATG	1 cut(s)	637
Fnu4HI	GCNGC	4 cut(s)	138, 323, 361, 401
FokI	GGATG	1 cut(s)	225
Fsp4HI	GCNGC	4 cut(s)	138, 323, 361, 401
FspBI	CTAG	2 cut(s)	151, 203
GlaI	GCGC	2 cut(s)	38, 211
GluI	GCNGC	4 cut(s)	138, 323, 361, 401
HaeIII	GGCC	1 cut(s)	539
HhaI	GCGC	2 cut(s)	39, 212
Hin1II	CATG	1 cut(s)	641
Hin6I	GCGC	2 cut(s)	37, 210
HinP1I	GCGC	2 cut(s)	37, 210
HincII	GTYRAC	1 cut(s)	473
HindII	GTYRAC	1 cut(s)	473
HinfI	GANTC	3 cut(s)	26, 304, 346
HpaI	GTTAAC	1 cut(s)	473
HphI	GGTGA	1 cut(s)	613
Hpy166II	GTNNAC	4 cut(s)	180, 473, 569, 693
Hpy188I	TCNGA	3 cut(s)	74, 512, 528
Hpy188III	TCNNGA	2 cut(s)	23, 262
Hpy8I	GTNNAC	4 cut(s)	180, 473, 569, 693
HpyAV	CCTTC	5 cut(s)	259, 269, 373, 528, 570
HpyCH4III	ACNGT	1 cut(s)	518
HpyCH4V	TGCA	2 cut(s)	400, 709
HpyF10VI	GCNNNNNNNGC	3 cut(s)	160, 360, 715
HpyF3I	CTNAG	2 cut(s)	155, 620
Hsp92II	CATG	1 cut(s)	641
HspAI	GCGC	2 cut(s)	37, 210
KspAI	GTTAAC	1 cut(s)	473
Kzo9I	GATC	2 cut(s)	523, 663
LpnPI	CCDG	9 cut(s)	76, 356, 393, 413, 557, 583, 632, 662, 701
Lsp1109I	GCAGC	3 cut(s)	124, 309, 412
LweI	GCATC	1 cut(s)	247
MaeI	CTAG	2 cut(s)	151, 203
MaeIII	GTNAC	2 cut(s)	170, 268
MalI	GATC	2 cut(s)	525, 665
MboI	GATC	2 cut(s)	523, 663
MboII	GAAGA	6 cut(s)	221, 324, 397, 433, 586, 595
MfeI	CAATTG	1 cut(s)	113
MluCI	AATT	3 cut(s)	113, 412, 446
MnlI	CCTC	9 cut(s)	23, 26, 141, 228, 231, 252, 269, 304, 473
MseI	TTAA	3 cut(s)	415, 472, 680
MslI	CAYNNNNRTG	1 cut(s)	549
MspA1I	CMGCKG	1 cut(s)	168
MunI	CAATTG	1 cut(s)	113
MwoI	GCNNNNNNNGC	3 cut(s)	160, 360, 715
NdeII	GATC	2 cut(s)	523, 663
NlaIII	CATG	1 cut(s)	641
NmuCI	GTSAC	1 cut(s)	170
OliI	CACNNNNGTG	1 cut(s)	549
PfeI	GAWTC	3 cut(s)	26, 304, 346
PkrI	GCNGC	4 cut(s)	139, 324, 362, 402
PspPI	GGNCC	1 cut(s)	537
PstI	CTGCAG	1 cut(s)	402
PvuII	CAGCTG	1 cut(s)	168
RsaI	GTAC	1 cut(s)	341
RsaNI	GTAC	1 cut(s)	340
RseI	CAYNNNNRTG	1 cut(s)	549
SaqAI	TTAA	3 cut(s)	415, 472, 680
SatI	GCNGC	4 cut(s)	138, 323, 361, 401
Sau3AI	GATC	2 cut(s)	523, 663
Sau96I	GGNCC	1 cut(s)	537
SfaNI	GCATC	1 cut(s)	247
SfcI	CTRYAG	1 cut(s)	398
SmiMI	CAYNNNNRTG	1 cut(s)	549
SmlI	CTYRAG	1 cut(s)	132
SmoI	CTYRAG	1 cut(s)	132
Sse9I	AATT	3 cut(s)	113, 412, 446
SsiI	CCGC	2 cut(s)	361, 454
SspMI	CTAG	2 cut(s)	151, 203
TaaI	ACNGT	1 cut(s)	518
TaqI	TCGA	1 cut(s)	184
TasI	AATT	3 cut(s)	113, 412, 446
TauI	GCSGC	1 cut(s)	363
TfiI	GAWTC	3 cut(s)	26, 304, 346
Tru1I	TTAA	3 cut(s)	415, 472, 680
Tru9I	TTAA	3 cut(s)	415, 472, 680
TscAI	CASTG	4 cut(s)	38, 523, 576, 615
TseFI	GTSAC	1 cut(s)	170
TseI	GCWGC	3 cut(s)	137, 322, 400
Tsp45I	GTSAC	1 cut(s)	170
TspDTI	ATGAA	2 cut(s)	221, 392
TspRI	CASTG	4 cut(s)	38, 523, 576, 615
XagI	CCTNNNNNAGG	1 cut(s)	263
XapI	RAATTY	1 cut(s)	446
XspI	CTAG	2 cut(s)	151, 203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.