Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0008057

Physical Location & Seq

Genomic Coordinates Reverse (-)

19900939 .. 19905934

Gene Structure 4996 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G266400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGGATATATGCCGATTCGCTTTGCTTAATTCCCCACTGCATCTTCCTCCTTTATCGATTCTCATCAGGCCTCCTGTTCTGTTTCAATCCTTCCAAACTTGCCCTCCAAAACTCACCAAATTTTCGCACCTGCTACTCCTCCCCCAAAAACCCATCAATCATACTAGACTCCTCTGTACCTCCTCCCATACTTCATCGCCATCGCCATCGTCGTCATCAATGGAAGCTCCTCCCCAAGGTTACCGCAGGAATGTCGGCATTTGTCTCATCAACGATTCTAAGAAGATTTTTGCTGCTTCAAGGTTAGATATACCCAATGCTTGGCAAATGCCCCAGGGTGGTATTGATGAGGCTGAAGATCCAAGAACTGCAGCCATGAGGGAACTAAGAGAAGAGACTGGAGTAAATTCAGCAGAAATTCTTGCAGAGGTACCTTATTGGTTAACATATGATTTCCCACCAGAAGTTCGGGCAAAACTTCAGCAACAATGGGGATCAGACTGGAAAGGCCAAGCACAGAAGTGGCTTCTTCTTAAGTTCACCGGGAAGGATGAAGAAATCAATCTTTTAGGTGATGGGAGTGAAAAACCTGAGTTTGGCGAGTGGTCATGGATGTCAGCAGAACAAATTATTGATCTTGCTGTGGATTTCAAGAAGCCTGTCTACAAGGAAGTTCTTGCAGTTTTCGCACCCTATCTTCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004551 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008893 GO:0009507 GO:0009536 GO:0009987 GO:0016462 GO:0016787 GO:0016788 GO:0016794 GO:0016817 GO:0016818 GO:0019637 GO:0034432 GO:0034641 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0055086 GO:0071704 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUDIX

Protein Analysis

235

Amino Acids

26.46

Weight (kDa)

5.85

Isoelectric Point (pI)

55.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008057)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10620
fragaria_vesca	FvH4_1g22720 FvH4_1g22720 FvH4_1g22720 FvH4_1g25050 FvH4_1g25050
malus_domestica	MD03G1166000.v1.1 MD11G1185500.v1.1
prunus_persica	Prupe.4G266400_v2.0.a1
pyrus_communis	pycom12g08760
rosa_chinensis	RchiOBHm_Chr2g0117011
rosa_laevigata	RLG00000018319
rosa_multiflora	Rmu_sc0011969.1_g000001 Rmu_ssc0000238.1_g000007
rosa_roxburghii	Rroxscaffold_2G00126820
rosa_rugosa	Rorug02G0209500 Rorug02G0209500 Rorug02G0209500
rosa_samantha	Rh2AG265400 Rh2BG277200 Rh2DG272700 Rh2DG291700
rosa_wichuraiana	Rw0G019100 Rw2G020940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	138
Acc36I	ACCTGC	1 cut(s)	138
Acc65I	GGTACC	1 cut(s)	430
AccB1I	GGYRCC	1 cut(s)	430
AccB7I	CCANNNNNTGG	1 cut(s)	321
AccI	GTMKAC	1 cut(s)	663
AciI	CCGC	1 cut(s)	244
AclWI	GGATC	2 cut(s)	353, 502
AcsI	RAATTY	3 cut(s)	119, 406, 417
AcuI	CTGAAG	2 cut(s)	375, 464
AfaI	GTAC	2 cut(s)	178, 432
AfiI	CCNNNNNNNGG	4 cut(s)	236, 321, 338, 596
AflII	CTTAAG	1 cut(s)	533
AgsI	TTSAA	4 cut(s)	86, 300, 652, 701
AjnI	CCWGG	1 cut(s)	333
AleI	CACNNNNGTG	1 cut(s)	520
AluBI	AGCT	1 cut(s)	227
AluI	AGCT	1 cut(s)	227
Alw26I	GTCTC	2 cut(s)	269, 389
AlwI	GGATC	2 cut(s)	353, 502
AoxI	GGCC	2 cut(s)	68, 508
ApeKI	GCWGC	2 cut(s)	293, 371
ApoI	RAATTY	3 cut(s)	119, 406, 417
Asp718I	GGTACC	1 cut(s)	430
AsuC2I	CCSGG	1 cut(s)	544
AsuHPI	GGTGA	3 cut(s)	106, 532, 584
BanI	GGYRCC	1 cut(s)	430
BarI	GAAGNNNNNNTAC	2 cut(s)	647, 679
BbvI	GCAGC	2 cut(s)	280, 383
BccI	CCATC	4 cut(s)	161, 208, 214, 569
BcgI	CGANNNNNNTGC	2 cut(s)	235, 269
BciT130I	CCWGG	1 cut(s)	335
BcnI	CCSGG	1 cut(s)	544
BcoDI	GTCTC	2 cut(s)	269, 389
BfaI	CTAG	1 cut(s)	165
BfmI	CTRYAG	1 cut(s)	369
BfrI	CTTAAG	1 cut(s)	533
BfuAI	ACCTGC	1 cut(s)	138
BisI	GCNGC	2 cut(s)	294, 372
BlsI	GCNGC	2 cut(s)	295, 373
Bme1390I	CCNGG	2 cut(s)	335, 544
BmiI	GGNNCC	1 cut(s)	432
BmrFI	CCNGG	2 cut(s)	335, 544
BmsI	GCATC	1 cut(s)	49
BpmI	CTGGAG	1 cut(s)	420
BpuMI	CCSGG	1 cut(s)	544
Bsa29I	ATCGAT	1 cut(s)	56
BsaBI	GATNNNNATC	1 cut(s)	62
BsaJI	CCNNGG	3 cut(s)	235, 333, 334
BsaXI	ACNNNNNCTCC	2 cut(s)	88, 118
Bsc4I	CCNNNNNNNGG	4 cut(s)	236, 321, 338, 596
Bse1I	ACTGG	2 cut(s)	403, 506
Bse8I	GATNNNNATC	1 cut(s)	62
BseBI	CCWGG	1 cut(s)	335
BseCI	ATCGAT	1 cut(s)	56
BseDI	CCNNGG	3 cut(s)	235, 333, 334
BseGI	GGATG	2 cut(s)	556, 618
BseJI	GATNNNNATC	1 cut(s)	62
BseLI	CCNNNNNNNGG	4 cut(s)	236, 321, 338, 596
BseMII	CTCAG	1 cut(s)	582
BseNI	ACTGG	2 cut(s)	403, 506
BseRI	GAGGAG	4 cut(s)	128, 161, 172, 219
BseXI	GCAGC	2 cut(s)	280, 383
BshFI	GGCC	2 cut(s)	70, 510
BshNI	GGYRCC	1 cut(s)	430
BshVI	ATCGAT	1 cut(s)	56
BsiSI	CCGG	1 cut(s)	543
BslI	CCNNNNNNNGG	4 cut(s)	236, 321, 338, 596
BsmAI	GTCTC	2 cut(s)	269, 389
BsnI	GGCC	2 cut(s)	70, 510
Bsp143I	GATC	3 cut(s)	358, 494, 634
BspACI	CCGC	1 cut(s)	244
BspANI	GGCC	2 cut(s)	70, 510
BspCNI	CTCAG	1 cut(s)	583
BspDI	ATCGAT	1 cut(s)	56
BspLI	GGNNCC	1 cut(s)	432
BspMAI	CTGCAG	1 cut(s)	373
BspMI	ACCTGC	1 cut(s)	138
BspPI	GGATC	2 cut(s)	353, 502
BspT107I	GGYRCC	1 cut(s)	430
BspTI	CTTAAG	1 cut(s)	533
BsrI	ACTGG	2 cut(s)	403, 506
BssECI	CCNNGG	3 cut(s)	235, 333, 334
BssMI	GATC	3 cut(s)	358, 494, 634
BssT1I	CCWWGG	1 cut(s)	235
Bst2UI	CCWGG	1 cut(s)	335
Bst6I	CTCTTC	1 cut(s)	387
BstAFI	CTTAAG	1 cut(s)	533
BstDEI	CTNAG	3 cut(s)	279, 386, 591
BstEII	GGTNACC	1 cut(s)	239
BstENI	CCTNNNNNAGG	1 cut(s)	234
BstF5I	GGATG	2 cut(s)	556, 618
BstKTI	GATC	3 cut(s)	361, 497, 637
BstMAI	GTCTC	2 cut(s)	269, 389
BstMBI	GATC	3 cut(s)	358, 494, 634
BstMWI	GCNNNNNNNGC	1 cut(s)	686
BstNI	CCWGG	1 cut(s)	335
BstPI	GGTNACC	1 cut(s)	239
BstSCI	CCNGG	2 cut(s)	333, 542
BstSFI	CTRYAG	1 cut(s)	369
BstV1I	GCAGC	2 cut(s)	280, 383
BstX2I	RGATCY	1 cut(s)	358
BstYI	RGATCY	1 cut(s)	358
Bsu15I	ATCGAT	1 cut(s)	56
BsuRI	GGCC	2 cut(s)	70, 510
BsuTUI	ATCGAT	1 cut(s)	56
BtgZI	GCGATG	2 cut(s)	180, 186
BtsCI	GGATG	2 cut(s)	556, 618
BtsI	GCAGTG	1 cut(s)	35
BtsIMutI	CAGTG	1 cut(s)	35
BveI	ACCTGC	1 cut(s)	138
ClaI	ATCGAT	1 cut(s)	56
Csp6I	GTAC	2 cut(s)	177, 431
CviAII	CATG	2 cut(s)	376, 609
CviJI	RGCY	7 cut(s)	70, 227, 353, 374, 510, 526, 658
CviKI_1	RGCY	7 cut(s)	70, 227, 353, 374, 510, 526, 658
CviQI	GTAC	2 cut(s)	177, 431
DdeI	CTNAG	3 cut(s)	279, 386, 591
DpnI	GATC	3 cut(s)	360, 496, 636
DpnII	GATC	3 cut(s)	358, 494, 634
Eam1104I	CTCTTC	1 cut(s)	387
EarI	CTCTTC	1 cut(s)	387
Eco130I	CCWWGG	1 cut(s)	235
Eco147I	AGGCCT	1 cut(s)	70
Eco57I	CTGAAG	2 cut(s)	375, 464
Eco91I	GGTNACC	1 cut(s)	239
EcoNI	CCTNNNNNAGG	1 cut(s)	234
EcoO65I	GGTNACC	1 cut(s)	239
EcoRII	CCWGG	1 cut(s)	333
EcoT14I	CCWWGG	1 cut(s)	235
ErhI	CCWWGG	1 cut(s)	235
FaeI	CATG	2 cut(s)	379, 612
FaiI	YATR	9 cut(s)	8, 10, 162, 189, 311, 377, 448, 450, 610
FatI	CATG	2 cut(s)	375, 608
FauNDI	CATATG	1 cut(s)	448
FblI	GTMKAC	1 cut(s)	663
Fnu4HI	GCNGC	2 cut(s)	294, 372
FokI	GGATG	2 cut(s)	563, 625
Fsp4HI	GCNGC	2 cut(s)	294, 372
FspBI	CTAG	1 cut(s)	165
GluI	GCNGC	2 cut(s)	294, 372
GsuI	CTGGAG	1 cut(s)	420
HaeIII	GGCC	2 cut(s)	70, 510
HapII	CCGG	1 cut(s)	543
Hin1II	CATG	2 cut(s)	379, 612
HincII	GTYRAC	1 cut(s)	444
HindII	GTYRAC	1 cut(s)	444
HinfI	GANTC	4 cut(s)	15, 58, 168, 275
HpaI	GTTAAC	1 cut(s)	444
HpaII	CCGG	1 cut(s)	543
HphI	GGTGA	3 cut(s)	106, 532, 584
Hpy166II	GTNNAC	3 cut(s)	444, 540, 664
Hpy188I	TCNGA	1 cut(s)	499
Hpy188III	TCNNGA	1 cut(s)	652
Hpy8I	GTNNAC	3 cut(s)	444, 540, 664
Hpy99I	CGWCG	1 cut(s)	214
HpyAV	CCTTC	2 cut(s)	100, 541
HpyCH4V	TGCA	4 cut(s)	40, 371, 425, 680
HpyF10VI	GCNNNNNNNGC	1 cut(s)	686
HpyF3I	CTNAG	3 cut(s)	279, 386, 591
Hsp92II	CATG	2 cut(s)	379, 612
KpnI	GGTACC	1 cut(s)	434
KspAI	GTTAAC	1 cut(s)	444
Kzo9I	GATC	3 cut(s)	358, 494, 634
LmnI	GCTCC	1 cut(s)	232
Lsp1109I	GCAGC	2 cut(s)	280, 383
LweI	GCATC	1 cut(s)	49
MaeI	CTAG	1 cut(s)	165
MaeIII	GTNAC	1 cut(s)	239
MalI	GATC	3 cut(s)	360, 496, 636
MboI	GATC	3 cut(s)	358, 494, 634
MboII	GAAGA	7 cut(s)	35, 295, 368, 404, 521, 566, 689
MflI	RGATCY	1 cut(s)	358
MluCI	AATT	5 cut(s)	28, 119, 406, 417, 627
MlyI	GAGTC	1 cut(s)	162
MseI	TTAA	3 cut(s)	27, 443, 534
MslI	CAYNNNNRTG	1 cut(s)	520
MspCI	CTTAAG	1 cut(s)	533
MspI	CCGG	1 cut(s)	543
MspR9I	CCNGG	2 cut(s)	335, 544
MvaI	CCWGG	1 cut(s)	335
MwoI	GCNNNNNNNGC	1 cut(s)	686
NciI	CCSGG	1 cut(s)	544
NdeI	CATATG	1 cut(s)	448
NdeII	GATC	3 cut(s)	358, 494, 634
NlaIII	CATG	2 cut(s)	379, 612
NlaIV	GGNNCC	1 cut(s)	432
OliI	CACNNNNGTG	1 cut(s)	520
PaqCI	CACCTGC	1 cut(s)	138
PasI	CCCWGGG	1 cut(s)	334
PceI	AGGCCT	1 cut(s)	70
PcsI	WCGNNNNNNNCGW	1 cut(s)	209
PfeI	GAWTC	3 cut(s)	15, 58, 275
PflMI	CCANNNNNTGG	1 cut(s)	321
PkrI	GCNGC	2 cut(s)	295, 373
PleI	GAGTC	1 cut(s)	162
PpsI	GAGTC	1 cut(s)	162
Psp6I	CCWGG	1 cut(s)	333
PspEI	GGTNACC	1 cut(s)	239
PspGI	CCWGG	1 cut(s)	333
PspN4I	GGNNCC	1 cut(s)	432
PstI	CTGCAG	1 cut(s)	373
PsuI	RGATCY	1 cut(s)	358
RsaI	GTAC	2 cut(s)	178, 432
RsaNI	GTAC	2 cut(s)	177, 431
RseI	CAYNNNNRTG	1 cut(s)	520
SaqAI	TTAA	3 cut(s)	27, 443, 534
SatI	GCNGC	2 cut(s)	294, 372
Sau3AI	GATC	3 cut(s)	358, 494, 634
SchI	GAGTC	1 cut(s)	162
ScrFI	CCNGG	2 cut(s)	335, 544
SetI	ASST	9 cut(s)	132, 182, 229, 241, 305, 432, 436, 574, 592
SfaNI	GCATC	1 cut(s)	49
SfcI	CTRYAG	1 cut(s)	369
SmiMI	CAYNNNNRTG	1 cut(s)	520
SmlI	CTYRAG	1 cut(s)	533
SmoI	CTYRAG	1 cut(s)	533
Sse9I	AATT	5 cut(s)	28, 119, 406, 417, 627
SseBI	AGGCCT	1 cut(s)	70
SsiI	CCGC	1 cut(s)	244
SspMI	CTAG	1 cut(s)	165
StuI	AGGCCT	1 cut(s)	70
StyD4I	CCNGG	2 cut(s)	333, 542
StyI	CCWWGG	1 cut(s)	235
TaqI	TCGA	1 cut(s)	56
TasI	AATT	5 cut(s)	28, 119, 406, 417, 627
TfiI	GAWTC	3 cut(s)	15, 58, 275
Tru1I	TTAA	3 cut(s)	27, 443, 534
Tru9I	TTAA	3 cut(s)	27, 443, 534
TscAI	CASTG	1 cut(s)	42
TseI	GCWGC	2 cut(s)	293, 371
TspDTI	ATGAA	2 cut(s)	183, 567
TspRI	CASTG	1 cut(s)	42
Van91I	CCANNNNNTGG	1 cut(s)	321
Vha464I	CTTAAG	1 cut(s)	533
XagI	CCTNNNNNAGG	1 cut(s)	234
XapI	RAATTY	3 cut(s)	119, 406, 417
XmiI	GTMKAC	1 cut(s)	663
XspI	CTAG	1 cut(s)	165

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.