Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0008057

Physical Location & Seq

Genomic Coordinates Reverse (-)

30254614 .. 30257817

Gene Structure 3204 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG277200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGGATATATGCCGATTTGCCTTGCATAGTTACCCGCTTTTTCTTCCCTCTTTATCAGTTCTCATCAAGCCTACAATTGTATTGCCATCGTCCTCAAGCTGCCATCCTAAACTAGCTAAGTTCGCACAGCTGTCACTCATTTACTCGAAACCAACTATTTATACTAGAGTGCGCCGTGCCTCCTCCTATTCTTCATCAGCATCCTCGTCAATGGAAGCCCCTCCTGAAGGTTACAGAAGGAATGTTGGTATCTGCCTCATCAATGATTCAAAGAAGATTTTTGCTGCTTCAAGGTTAGATGTACCTGATTCTTGGCAAATGCCGCAAGGTGGCATTGATGAGGGTGAAGATCCAAGAACTGCAGCCATCAGGGAATTAAGAGAAGAGACAGGAGTTCAGTCGGCAGAAATTCTTGCAGAGACACCTAATTGGTTAACCTATGATTTCCCACCAGAAGTTAGGGCAAAACTTCAGAAACAGTGGGGATCAGATTGGAAGGGCCAAGCACAGAAGTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004551 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008893 GO:0009507 GO:0009536 GO:0009987 GO:0016462 GO:0016787 GO:0016788 GO:0016794 GO:0016817 GO:0016818 GO:0019637 GO:0034432 GO:0034641 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0055086 GO:0071704 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUDIX

Protein Analysis

172

Amino Acids

19.29

Weight (kDa)

8.77

Isoelectric Point (pI)

55.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NUDIX	PF00293	78 - 153	3.8e-18	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0008057)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10620
fragaria_vesca	FvH4_1g22720 FvH4_1g22720 FvH4_1g22720 FvH4_1g25050 FvH4_1g25050
malus_domestica	MD03G1166000.v1.1 MD11G1185500.v1.1
prunus_persica	Prupe.4G266400_v2.0.a1
pyrus_communis	pycom12g08760
rosa_chinensis	RchiOBHm_Chr2g0117011
rosa_laevigata	RLG00000018319
rosa_multiflora	Rmu_sc0011969.1_g000001 Rmu_ssc0000238.1_g000007
rosa_roxburghii	Rroxscaffold_2G00126820
rosa_rugosa	Rorug02G0209500 Rorug02G0209500 Rorug02G0209500
rosa_samantha	Rh2AG265400 Rh2BG277200 Rh2DG272700 Rh2DG291700
rosa_wichuraiana	Rw0G019100 Rw2G020940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	35, 323
AclWI	GGATC	2 cut(s)	344, 493
AcsI	RAATTY	1 cut(s)	408
AcuI	CTGAAG	2 cut(s)	246, 455
AfaI	GTAC	1 cut(s)	303
AfiI	CCNNNNNNNGG	2 cut(s)	227, 329
AgsI	TTSAA	2 cut(s)	270, 291
AleI	CACNNNNGTG	1 cut(s)	511
AluBI	AGCT	3 cut(s)	99, 116, 130
AluI	AGCT	3 cut(s)	99, 116, 130
Alw26I	GTCTC	2 cut(s)	380, 413
AlwI	GGATC	2 cut(s)	344, 493
AoxI	GGCC	1 cut(s)	499
ApeKI	GCWGC	3 cut(s)	99, 284, 362
ApoI	RAATTY	1 cut(s)	408
AspLEI	GCGC	1 cut(s)	174
AspS9I	GGNCC	1 cut(s)	499
AsuHPI	GGTGA	1 cut(s)	356
BbvI	GCAGC	3 cut(s)	86, 271, 374
BccI	CCATC	3 cut(s)	94, 111, 374
BceAI	ACGGC	1 cut(s)	159
BcoDI	GTCTC	2 cut(s)	380, 413
BfaI	CTAG	2 cut(s)	113, 165
BfmI	CTRYAG	1 cut(s)	360
BisI	GCNGC	4 cut(s)	100, 285, 323, 363
BlsI	GCNGC	4 cut(s)	101, 286, 324, 364
BmgT120I	GGNCC	1 cut(s)	499
BmsI	GCATC	1 cut(s)	209
BpuEI	CTTGAG	1 cut(s)	79
Bsc4I	CCNNNNNNNGG	2 cut(s)	227, 329
BseGI	GGATG	2 cut(s)	103, 200
BseLI	CCNNNNNNNGG	2 cut(s)	227, 329
BseRI	GAGGAG	1 cut(s)	172
BseXI	GCAGC	3 cut(s)	86, 271, 374
BshFI	GGCC	1 cut(s)	501
BslI	CCNNNNNNNGG	2 cut(s)	227, 329
BsmAI	GTCTC	2 cut(s)	380, 413
BsnI	GGCC	1 cut(s)	501
Bsp143I	GATC	2 cut(s)	349, 485
BspACI	CCGC	2 cut(s)	35, 323
BspANI	GGCC	1 cut(s)	501
BspMAI	CTGCAG	1 cut(s)	364
BspPI	GGATC	2 cut(s)	344, 493
BssMI	GATC	2 cut(s)	349, 485
Bst4CI	ACNGT	1 cut(s)	480
Bst6I	CTCTTC	1 cut(s)	378
BstDEI	CTNAG	1 cut(s)	117
BstENI	CCTNNNNNAGG	1 cut(s)	225
BstF5I	GGATG	2 cut(s)	103, 200
BstHHI	GCGC	1 cut(s)	174
BstKTI	GATC	2 cut(s)	352, 488
BstMAI	GTCTC	2 cut(s)	380, 413
BstMBI	GATC	2 cut(s)	349, 485
BstMWI	GCNNNNNNNGC	2 cut(s)	122, 322
BstSFI	CTRYAG	1 cut(s)	360
BstV1I	GCAGC	3 cut(s)	86, 271, 374
BstX2I	RGATCY	1 cut(s)	349
BstYI	RGATCY	1 cut(s)	349
BsuRI	GGCC	1 cut(s)	501
BtsCI	GGATG	2 cut(s)	103, 200
BtsIMutI	CAGTG	1 cut(s)	485
CfoI	GCGC	1 cut(s)	174
Cfr13I	GGNCC	1 cut(s)	499
Csp6I	GTAC	1 cut(s)	302
CviJI	RGCY	7 cut(s)	70, 99, 116, 130, 218, 365, 501
CviKI_1	RGCY	7 cut(s)	70, 99, 116, 130, 218, 365, 501
CviQI	GTAC	1 cut(s)	302
DdeI	CTNAG	1 cut(s)	117
DpnI	GATC	2 cut(s)	351, 487
DpnII	GATC	2 cut(s)	349, 485
Eam1104I	CTCTTC	1 cut(s)	378
EarI	CTCTTC	1 cut(s)	378
Eco57I	CTGAAG	2 cut(s)	246, 455
EcoNI	CCTNNNNNAGG	1 cut(s)	225
FaiI	YATR	5 cut(s)	8, 10, 27, 162, 441
FauI	CCCGC	1 cut(s)	42
Fnu4HI	GCNGC	4 cut(s)	100, 285, 323, 363
FokI	GGATG	2 cut(s)	90, 187
Fsp4HI	GCNGC	4 cut(s)	100, 285, 323, 363
FspBI	CTAG	2 cut(s)	113, 165
GlaI	GCGC	1 cut(s)	173
GluI	GCNGC	4 cut(s)	100, 285, 323, 363
HaeIII	GGCC	1 cut(s)	501
HhaI	GCGC	1 cut(s)	174
Hin6I	GCGC	1 cut(s)	172
HinP1I	GCGC	1 cut(s)	172
HincII	GTYRAC	1 cut(s)	435
HindII	GTYRAC	1 cut(s)	435
HinfI	GANTC	2 cut(s)	266, 308
HpaI	GTTAAC	1 cut(s)	435
HphI	GGTGA	1 cut(s)	356
Hpy166II	GTNNAC	1 cut(s)	435
Hpy188I	TCNGA	2 cut(s)	474, 490
Hpy188III	TCNNGA	1 cut(s)	224
Hpy8I	GTNNAC	1 cut(s)	435
HpyAV	CCTTC	3 cut(s)	221, 231, 490
HpyCH4III	ACNGT	1 cut(s)	480
HpyCH4V	TGCA	3 cut(s)	25, 362, 416
HpyF10VI	GCNNNNNNNGC	2 cut(s)	122, 322
HpyF3I	CTNAG	1 cut(s)	117
HspAI	GCGC	1 cut(s)	172
KspAI	GTTAAC	1 cut(s)	435
Kzo9I	GATC	2 cut(s)	349, 485
LpnPI	CCDG	5 cut(s)	237, 318, 355, 375, 465
Lsp1109I	GCAGC	3 cut(s)	86, 271, 374
LweI	GCATC	1 cut(s)	209
MaeI	CTAG	2 cut(s)	113, 165
MaeIII	GTNAC	3 cut(s)	29, 132, 230
MalI	GATC	2 cut(s)	351, 487
MboI	GATC	2 cut(s)	349, 485
MboII	GAAGA	5 cut(s)	35, 183, 286, 359, 395
MfeI	CAATTG	1 cut(s)	75
MflI	RGATCY	1 cut(s)	349
MluCI	AATT	4 cut(s)	75, 374, 408, 427
MnlI	CCTC	8 cut(s)	58, 103, 190, 193, 214, 231, 266, 334
MseI	TTAA	2 cut(s)	377, 434
MslI	CAYNNNNRTG	1 cut(s)	511
MspA1I	CMGCKG	1 cut(s)	130
MunI	CAATTG	1 cut(s)	75
MwoI	GCNNNNNNNGC	2 cut(s)	122, 322
NdeII	GATC	2 cut(s)	349, 485
NmuCI	GTSAC	1 cut(s)	132
OliI	CACNNNNGTG	1 cut(s)	511
PfeI	GAWTC	2 cut(s)	266, 308
PkrI	GCNGC	4 cut(s)	101, 286, 324, 364
PspPI	GGNCC	1 cut(s)	499
PstI	CTGCAG	1 cut(s)	364
PsuI	RGATCY	1 cut(s)	349
PvuII	CAGCTG	1 cut(s)	130
RsaI	GTAC	1 cut(s)	303
RsaNI	GTAC	1 cut(s)	302
RseI	CAYNNNNRTG	1 cut(s)	511
SaqAI	TTAA	2 cut(s)	377, 434
SatI	GCNGC	4 cut(s)	100, 285, 323, 363
Sau3AI	GATC	2 cut(s)	349, 485
Sau96I	GGNCC	1 cut(s)	499
SetI	ASST	9 cut(s)	101, 118, 132, 232, 296, 307, 331, 427, 440
SfaNI	GCATC	1 cut(s)	209
SfcI	CTRYAG	1 cut(s)	360
SmiMI	CAYNNNNRTG	1 cut(s)	511
SmlI	CTYRAG	1 cut(s)	94
SmoI	CTYRAG	1 cut(s)	94
Sse9I	AATT	4 cut(s)	75, 374, 408, 427
SsiI	CCGC	2 cut(s)	35, 323
SspMI	CTAG	2 cut(s)	113, 165
TaaI	ACNGT	1 cut(s)	480
TaqI	TCGA	1 cut(s)	146
TasI	AATT	4 cut(s)	75, 374, 408, 427
TauI	GCSGC	1 cut(s)	325
TfiI	GAWTC	2 cut(s)	266, 308
Tru1I	TTAA	2 cut(s)	377, 434
Tru9I	TTAA	2 cut(s)	377, 434
TscAI	CASTG	1 cut(s)	485
TseFI	GTSAC	1 cut(s)	132
TseI	GCWGC	3 cut(s)	99, 284, 362
Tsp45I	GTSAC	1 cut(s)	132
TspDTI	ATGAA	1 cut(s)	183
TspRI	CASTG	1 cut(s)	485
XagI	CCTNNNNNAGG	1 cut(s)	225
XapI	RAATTY	1 cut(s)	408
XspI	CTAG	2 cut(s)	113, 165

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.