Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000238.1

Orthogroup ID

OG0008057

Physical Location & Seq

Genomic Coordinates Forward (+)

31059 .. 31941

Gene Structure 883 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000238.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

atggaagcccctcccgaaggttacagaaggaatgttggtatctgcctcatcaatgattcaaataagatttttgctgcttcaaggttagatgtacctgattcttggcaaatgccgcaaggtggcattgatgagggtgaagatccaagaactgcagccatcagggaattaagagaagagacaggagttcagtctgcagaaattcttgcagagacacctcattggttaacctatgatttcccaccagaagttagggcaaaacttcagaaacagtggggatcagattggaagggccaagcacagaagtggtttctttttcggttcactgggaaggatgaagaagtcaatcttctaggtgatggcagtgaaaaacctgagtttggcgagtggtcatggataacaccagaacaagtagttgatcttgctgttgattttaagaagcctgtttacaaagaagttcttgcagttttcgcaccctattttcagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004551 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008893 GO:0009507 GO:0009536 GO:0009987 GO:0016462 GO:0016787 GO:0016788 GO:0016794 GO:0016817 GO:0016818 GO:0019637 GO:0034432 GO:0034641 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0055086 GO:0071704 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUDIX

Protein Analysis

161

Amino Acids

18.45

Weight (kDa)

4.64

Isoelectric Point (pI)

42.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008057)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10620
fragaria_vesca	FvH4_1g22720 FvH4_1g22720 FvH4_1g22720 FvH4_1g25050 FvH4_1g25050
malus_domestica	MD03G1166000.v1.1 MD11G1185500.v1.1
prunus_persica	Prupe.4G266400_v2.0.a1
pyrus_communis	pycom12g08760
rosa_chinensis	RchiOBHm_Chr2g0117011
rosa_laevigata	RLG00000018319
rosa_multiflora	Rmu_sc0011969.1_g000001 Rmu_ssc0000238.1_g000007
rosa_roxburghii	Rroxscaffold_2G00126820
rosa_rugosa	Rorug02G0209500 Rorug02G0209500 Rorug02G0209500
rosa_samantha	Rh2AG265400 Rh2BG277200 Rh2DG272700 Rh2DG291700
rosa_wichuraiana	Rw0G019100 Rw2G020940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	113
AclWI	GGATC	2 cut(s)	134, 283
AcsI	RAATTY	1 cut(s)	198
AcuI	CTGAAG	1 cut(s)	245
AfaI	GTAC	1 cut(s)	93
AfiI	CCNNNNNNNGG	3 cut(s)	17, 119, 377
AgsI	TTSAA	2 cut(s)	60, 81
AleI	CACNNNNGTG	1 cut(s)	301
Alw26I	GTCTC	2 cut(s)	170, 203
AlwI	GGATC	2 cut(s)	134, 283
AoxI	GGCC	1 cut(s)	289
ApeKI	GCWGC	2 cut(s)	74, 152
ApoI	RAATTY	1 cut(s)	198
AspS9I	GGNCC	1 cut(s)	289
AsuHPI	GGTGA	2 cut(s)	146, 365
BarI	GAAGNNNNNNTAC	2 cut(s)	428, 460
BbvI	GCAGC	2 cut(s)	61, 164
BccI	CCATC	2 cut(s)	164, 350
BcoDI	GTCTC	2 cut(s)	170, 203
BfaI	CTAG	1 cut(s)	350
BfmI	CTRYAG	2 cut(s)	150, 192
BisI	GCNGC	3 cut(s)	75, 113, 153
BlsI	GCNGC	3 cut(s)	76, 114, 154
BmgT120I	GGNCC	1 cut(s)	289
BmrI	ACTGGG	1 cut(s)	333
BmuI	ACTGGG	1 cut(s)	333
Bsc4I	CCNNNNNNNGG	3 cut(s)	17, 119, 377
Bse1I	ACTGG	1 cut(s)	328
BseGI	GGATG	1 cut(s)	337
BseLI	CCNNNNNNNGG	3 cut(s)	17, 119, 377
BseMII	CTCAG	1 cut(s)	363
BseNI	ACTGG	1 cut(s)	328
BseXI	GCAGC	2 cut(s)	61, 164
BshFI	GGCC	1 cut(s)	291
BslI	CCNNNNNNNGG	3 cut(s)	17, 119, 377
BsmAI	GTCTC	2 cut(s)	170, 203
BsnI	GGCC	1 cut(s)	291
Bsp143I	GATC	3 cut(s)	139, 275, 415
BspACI	CCGC	1 cut(s)	113
BspANI	GGCC	1 cut(s)	291
BspCNI	CTCAG	1 cut(s)	364
BspMAI	CTGCAG	2 cut(s)	154, 196
BspPI	GGATC	2 cut(s)	134, 283
BsrI	ACTGG	1 cut(s)	328
BssMI	GATC	3 cut(s)	139, 275, 415
Bst4CI	ACNGT	1 cut(s)	270
Bst6I	CTCTTC	1 cut(s)	168
BstDEI	CTNAG	1 cut(s)	372
BstENI	CCTNNNNNAGG	1 cut(s)	15
BstF5I	GGATG	1 cut(s)	337
BstKTI	GATC	3 cut(s)	142, 278, 418
BstMAI	GTCTC	2 cut(s)	170, 203
BstMBI	GATC	3 cut(s)	139, 275, 415
BstMWI	GCNNNNNNNGC	2 cut(s)	112, 467
BstSFI	CTRYAG	2 cut(s)	150, 192
BstV1I	GCAGC	2 cut(s)	61, 164
BstX2I	RGATCY	1 cut(s)	139
BstYI	RGATCY	1 cut(s)	139
BsuRI	GGCC	1 cut(s)	291
BtsCI	GGATG	1 cut(s)	337
BtsI	GCAGTG	1 cut(s)	367
BtsIMutI	CAGTG	3 cut(s)	275, 321, 367
Cfr13I	GGNCC	1 cut(s)	289
Csp6I	GTAC	1 cut(s)	92
CviAII	CATG	1 cut(s)	390
CviJI	RGCY	4 cut(s)	8, 155, 291, 439
CviKI_1	RGCY	4 cut(s)	8, 155, 291, 439
CviQI	GTAC	1 cut(s)	92
DdeI	CTNAG	1 cut(s)	372
DpnI	GATC	3 cut(s)	141, 277, 417
DpnII	GATC	3 cut(s)	139, 275, 415
Eam1104I	CTCTTC	1 cut(s)	168
EarI	CTCTTC	1 cut(s)	168
Eco57I	CTGAAG	1 cut(s)	245
EcoNI	CCTNNNNNAGG	1 cut(s)	15
FaeI	CATG	1 cut(s)	393
FaiI	YATR	2 cut(s)	231, 391
FalI	AAGNNNNNCTT	4 cut(s)	330, 362, 441, 473
FatI	CATG	1 cut(s)	389
Fnu4HI	GCNGC	3 cut(s)	75, 113, 153
FokI	GGATG	1 cut(s)	344
Fsp4HI	GCNGC	3 cut(s)	75, 113, 153
FspBI	CTAG	1 cut(s)	350
GluI	GCNGC	3 cut(s)	75, 113, 153
HaeIII	GGCC	1 cut(s)	291
Hin1II	CATG	1 cut(s)	393
HincII	GTYRAC	1 cut(s)	225
HindII	GTYRAC	1 cut(s)	225
HinfI	GANTC	2 cut(s)	56, 98
HpaI	GTTAAC	1 cut(s)	225
HphI	GGTGA	2 cut(s)	146, 365
Hpy166II	GTNNAC	3 cut(s)	225, 321, 445
Hpy188I	TCNGA	2 cut(s)	264, 280
Hpy188III	TCNNGA	1 cut(s)	14
Hpy8I	GTNNAC	3 cut(s)	225, 321, 445
HpyAV	CCTTC	4 cut(s)	11, 21, 280, 322
HpyCH4III	ACNGT	1 cut(s)	270
HpyCH4V	TGCA	4 cut(s)	152, 194, 206, 461
HpyF10VI	GCNNNNNNNGC	2 cut(s)	112, 467
HpyF3I	CTNAG	1 cut(s)	372
Hsp92II	CATG	1 cut(s)	393
KspAI	GTTAAC	1 cut(s)	225
Kzo9I	GATC	3 cut(s)	139, 275, 415
LpnPI	CCDG	8 cut(s)	108, 145, 165, 255, 309, 384, 414, 453
Lsp1109I	GCAGC	2 cut(s)	61, 164
MaeI	CTAG	1 cut(s)	350
MaeIII	GTNAC	1 cut(s)	20
MalI	GATC	3 cut(s)	141, 277, 417
MboI	GATC	3 cut(s)	139, 275, 415
MboII	GAAGA	4 cut(s)	149, 185, 338, 347
MflI	RGATCY	1 cut(s)	139
MluCI	AATT	2 cut(s)	164, 198
MnlI	CCTC	4 cut(s)	21, 56, 124, 225
MseI	TTAA	3 cut(s)	167, 224, 432
MslI	CAYNNNNRTG	1 cut(s)	301
MwoI	GCNNNNNNNGC	2 cut(s)	112, 467
NdeII	GATC	3 cut(s)	139, 275, 415
NlaIII	CATG	1 cut(s)	393
OliI	CACNNNNGTG	1 cut(s)	301
PfeI	GAWTC	2 cut(s)	56, 98
PkrI	GCNGC	3 cut(s)	76, 114, 154
PspPI	GGNCC	1 cut(s)	289
PstI	CTGCAG	2 cut(s)	154, 196
PsuI	RGATCY	1 cut(s)	139
RsaI	GTAC	1 cut(s)	93
RsaNI	GTAC	1 cut(s)	92
RseI	CAYNNNNRTG	1 cut(s)	301
SaqAI	TTAA	3 cut(s)	167, 224, 432
SatI	GCNGC	3 cut(s)	75, 113, 153
Sau3AI	GATC	3 cut(s)	139, 275, 415
Sau96I	GGNCC	1 cut(s)	289
SetI	ASST	8 cut(s)	22, 86, 97, 121, 217, 230, 355, 373
SfcI	CTRYAG	2 cut(s)	150, 192
SmiMI	CAYNNNNRTG	1 cut(s)	301
Sse9I	AATT	2 cut(s)	164, 198
SsiI	CCGC	1 cut(s)	113
SspMI	CTAG	1 cut(s)	350
TaaI	ACNGT	1 cut(s)	270
TasI	AATT	2 cut(s)	164, 198
TauI	GCSGC	1 cut(s)	115
TfiI	GAWTC	2 cut(s)	56, 98
Tru1I	TTAA	3 cut(s)	167, 224, 432
Tru9I	TTAA	3 cut(s)	167, 224, 432
TscAI	CASTG	3 cut(s)	275, 328, 367
TseI	GCWGC	2 cut(s)	74, 152
TspDTI	ATGAA	1 cut(s)	348
TspRI	CASTG	3 cut(s)	275, 328, 367
XagI	CCTNNNNNAGG	1 cut(s)	15
XapI	RAATTY	1 cut(s)	198
XspI	CTAG	1 cut(s)	350

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.