Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0008057

Physical Location & Seq

Genomic Coordinates Forward (+)

16846966 .. 16850759

Gene Structure 3794 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g25050.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGGATATATGCCGATTTGCCTTGCATAGTTACCCGCTATATCTTCCCCCTTTATCAATTCTCATCAAGCCTGCTATTGTATTGCCATCCTCCTCAAGCTGCCATTCTAAACTAGCTAAGTTCGCACAGTTGTCACTCATTCCTTCAAAACCAACTATTTATACTAGAGTGGGCCGTGCCTCCTCCTATTCTTCATCAGCATCCTCTTCAATGGAAGCCCCTCCTGAAGGTTACAGAAGGAATGTTGGTATCTGCCTCATCAATGATTCGAAGAAGATTTTTGCTGCTTCAAGGTTAGATATACCTGATTCTTGGCAAATGCCACAGGGTGGCATTGATGAGGGTGAAGATCCAAGAGCTGCAGCCATCAGGGAATTAAGAGAAGAGACAGGAGTTCTGTCAGCAGAAATTCTTTCCGAGACACCTCATTGGTTAACTTATGATTTCCCACCAGAAGTTAGGGCAAAACTTCAGAAACAGTGGGGATCAGATTGGAAGGGCCAAGCGCAAAAATGGTTTCTTTTTAAGTTCACTGGGAAGGATGAAGAAGTCAATCTTCTAGGTGATGGCAGTGAAAAACCTGAGTTTGGGGAGTGGTCATGGATATCACCAGAACAAGTAGTTGATCTTGCTGTGGATTTTAAGAAGCCTGTTTACAAGGAAGTTCTTGCAGTTTTTGCACCCTATTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004551 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008893 GO:0009507 GO:0009536 GO:0009987 GO:0016462 GO:0016787 GO:0016788 GO:0016794 GO:0016817 GO:0016818 GO:0019637 GO:0034432 GO:0034641 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0055086 GO:0071704 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUDIX

Protein Analysis

231

Amino Acids

25.8

Weight (kDa)

5.72

Isoelectric Point (pI)

43.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NUDIX	PF00293	78 - 220	4.6e-24	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008057)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10620
fragaria_vesca	FvH4_1g22720 FvH4_1g22720 FvH4_1g22720 FvH4_1g25050 FvH4_1g25050
malus_domestica	MD03G1166000.v1.1 MD11G1185500.v1.1
prunus_persica	Prupe.4G266400_v2.0.a1
pyrus_communis	pycom12g08760
rosa_chinensis	RchiOBHm_Chr2g0117011
rosa_laevigata	RLG00000018319
rosa_multiflora	Rmu_sc0011969.1_g000001 Rmu_ssc0000238.1_g000007
rosa_roxburghii	Rroxscaffold_2G00126820
rosa_rugosa	Rorug02G0209500 Rorug02G0209500 Rorug02G0209500
rosa_samantha	Rh2AG265400 Rh2BG277200 Rh2DG272700 Rh2DG291700
rosa_wichuraiana	Rw0G019100 Rw2G020940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	329
AciI	CCGC	1 cut(s)	35
AclWI	GGATC	2 cut(s)	344, 493
AcsI	RAATTY	1 cut(s)	408
AcuI	CTGAAG	2 cut(s)	246, 455
AdeI	CACNNNGTG	1 cut(s)	329
AfiI	CCNNNNNNNGG	3 cut(s)	227, 329, 587
AgsI	TTSAA	3 cut(s)	147, 210, 291
AluBI	AGCT	3 cut(s)	99, 116, 359
AluI	AGCT	3 cut(s)	99, 116, 359
Alw26I	GTCTC	2 cut(s)	380, 413
AlwI	GGATC	2 cut(s)	344, 493
AoxI	GGCC	2 cut(s)	172, 499
ApeKI	GCWGC	4 cut(s)	99, 284, 359, 362
ApoI	RAATTY	1 cut(s)	408
AspLEI	GCGC	1 cut(s)	508
AspS9I	GGNCC	2 cut(s)	172, 499
AsuHPI	GGTGA	3 cut(s)	356, 575, 600
AsuII	TTCGAA	1 cut(s)	269
BarI	GAAGNNNNNNTAC	2 cut(s)	638, 670
BbvI	GCAGC	4 cut(s)	86, 271, 346, 374
BccI	CCATC	3 cut(s)	94, 374, 560
BceAI	ACGGC	1 cut(s)	159
BcoDI	GTCTC	2 cut(s)	380, 413
BfaI	CTAG	3 cut(s)	113, 165, 560
BfmI	CTRYAG	1 cut(s)	360
BisI	GCNGC	4 cut(s)	100, 285, 360, 363
BlsI	GCNGC	4 cut(s)	101, 286, 361, 364
BmgT120I	GGNCC	2 cut(s)	172, 499
BmrI	ACTGGG	1 cut(s)	543
BmsI	GCATC	1 cut(s)	209
BmuI	ACTGGG	1 cut(s)	543
Bpu14I	TTCGAA	1 cut(s)	269
BpuEI	CTTGAG	1 cut(s)	79
Bsc4I	CCNNNNNNNGG	3 cut(s)	227, 329, 587
Bse1I	ACTGG	1 cut(s)	538
BseGI	GGATG	3 cut(s)	86, 200, 547
BseLI	CCNNNNNNNGG	3 cut(s)	227, 329, 587
BseMII	CTCAG	1 cut(s)	573
BseNI	ACTGG	1 cut(s)	538
BseRI	GAGGAG	2 cut(s)	82, 172
BseXI	GCAGC	4 cut(s)	86, 271, 346, 374
BshFI	GGCC	2 cut(s)	174, 501
BslI	CCNNNNNNNGG	3 cut(s)	227, 329, 587
BsmAI	GTCTC	2 cut(s)	380, 413
BsnI	GGCC	2 cut(s)	174, 501
Bsp119I	TTCGAA	1 cut(s)	269
Bsp143I	GATC	3 cut(s)	349, 485, 625
BspACI	CCGC	1 cut(s)	35
BspANI	GGCC	2 cut(s)	174, 501
BspCNI	CTCAG	1 cut(s)	574
BspMAI	CTGCAG	1 cut(s)	364
BspPI	GGATC	2 cut(s)	344, 493
BspT104I	TTCGAA	1 cut(s)	269
BsrI	ACTGG	1 cut(s)	538
BssMI	GATC	3 cut(s)	349, 485, 625
Bst4CI	ACNGT	2 cut(s)	129, 480
Bst6I	CTCTTC	2 cut(s)	211, 378
BstAPI	GCANNNNNTGC	1 cut(s)	677
BstBI	TTCGAA	1 cut(s)	269
BstC8I	GCNNGC	1 cut(s)	72
BstDEI	CTNAG	2 cut(s)	117, 582
BstENI	CCTNNNNNAGG	1 cut(s)	225
BstF5I	GGATG	3 cut(s)	86, 200, 547
BstHHI	GCGC	1 cut(s)	508
BstKTI	GATC	3 cut(s)	352, 488, 628
BstMAI	GTCTC	2 cut(s)	380, 413
BstMBI	GATC	3 cut(s)	349, 485, 625
BstMWI	GCNNNNNNNGC	2 cut(s)	122, 677
BstSFI	CTRYAG	1 cut(s)	360
BstV1I	GCAGC	4 cut(s)	86, 271, 346, 374
BstX2I	RGATCY	1 cut(s)	349
BstYI	RGATCY	1 cut(s)	349
BsuRI	GGCC	2 cut(s)	174, 501
BtsCI	GGATG	3 cut(s)	86, 200, 547
BtsI	GCAGTG	1 cut(s)	577
BtsIMutI	CAGTG	3 cut(s)	485, 531, 577
Cac8I	GCNNGC	1 cut(s)	72
CfoI	GCGC	1 cut(s)	508
Cfr13I	GGNCC	2 cut(s)	172, 499
CviAII	CATG	1 cut(s)	600
CviJI	RGCY	9 cut(s)	70, 99, 116, 174, 218, 359, 365, 501, 649
CviKI_1	RGCY	9 cut(s)	70, 99, 116, 174, 218, 359, 365, 501, 649
DdeI	CTNAG	2 cut(s)	117, 582
DpnI	GATC	3 cut(s)	351, 487, 627
DpnII	GATC	3 cut(s)	349, 485, 625
DraIII	CACNNNGTG	1 cut(s)	329
Eam1104I	CTCTTC	2 cut(s)	211, 378
EarI	CTCTTC	2 cut(s)	211, 378
Eco32I	GATATC	1 cut(s)	606
Eco57I	CTGAAG	2 cut(s)	246, 455
EcoNI	CCTNNNNNAGG	1 cut(s)	225
EcoRV	GATATC	1 cut(s)	606
FaeI	CATG	1 cut(s)	603
FaiI	YATR	8 cut(s)	8, 10, 27, 40, 162, 302, 441, 601
FalI	AAGNNNNNCTT	2 cut(s)	540, 572
FatI	CATG	1 cut(s)	599
FauI	CCCGC	1 cut(s)	42
Fnu4HI	GCNGC	4 cut(s)	100, 285, 360, 363
FokI	GGATG	3 cut(s)	73, 187, 554
Fsp4HI	GCNGC	4 cut(s)	100, 285, 360, 363
FspBI	CTAG	3 cut(s)	113, 165, 560
GlaI	GCGC	1 cut(s)	507
GluI	GCNGC	4 cut(s)	100, 285, 360, 363
HaeIII	GGCC	2 cut(s)	174, 501
HhaI	GCGC	1 cut(s)	508
Hin1II	CATG	1 cut(s)	603
Hin6I	GCGC	1 cut(s)	506
HinP1I	GCGC	1 cut(s)	506
HincII	GTYRAC	1 cut(s)	435
HindII	GTYRAC	1 cut(s)	435
HinfI	GANTC	2 cut(s)	266, 308
HpaI	GTTAAC	1 cut(s)	435
HphI	GGTGA	3 cut(s)	356, 575, 600
Hpy166II	GTNNAC	3 cut(s)	435, 531, 655
Hpy188I	TCNGA	3 cut(s)	418, 474, 490
Hpy188III	TCNNGA	1 cut(s)	224
Hpy8I	GTNNAC	3 cut(s)	435, 531, 655
HpyAV	CCTTC	5 cut(s)	153, 221, 231, 490, 532
HpyCH4III	ACNGT	2 cut(s)	129, 480
HpyCH4V	TGCA	4 cut(s)	25, 362, 671, 680
HpyF10VI	GCNNNNNNNGC	2 cut(s)	122, 677
HpyF3I	CTNAG	2 cut(s)	117, 582
Hsp92II	CATG	1 cut(s)	603
HspAI	GCGC	1 cut(s)	506
KspAI	GTTAAC	1 cut(s)	435
Kzo9I	GATC	3 cut(s)	349, 485, 625
Lsp1109I	GCAGC	4 cut(s)	86, 271, 346, 374
LweI	GCATC	1 cut(s)	209
MaeI	CTAG	3 cut(s)	113, 165, 560
MaeIII	GTNAC	3 cut(s)	29, 132, 230
MalI	GATC	3 cut(s)	351, 487, 627
MboI	GATC	3 cut(s)	349, 485, 625
MboII	GAAGA	9 cut(s)	35, 183, 198, 283, 286, 359, 395, 548, 557
MflI	RGATCY	1 cut(s)	349
MluCI	AATT	3 cut(s)	57, 374, 408
MnlI	CCTC	9 cut(s)	100, 103, 190, 193, 214, 231, 266, 334, 435
MseI	TTAA	5 cut(s)	377, 434, 525, 642, 691
MwoI	GCNNNNNNNGC	2 cut(s)	122, 677
NdeII	GATC	3 cut(s)	349, 485, 625
NlaIII	CATG	1 cut(s)	603
NmuCI	GTSAC	1 cut(s)	132
NspV	TTCGAA	1 cut(s)	269
PfeI	GAWTC	2 cut(s)	266, 308
PflMI	CCANNNNNTGG	1 cut(s)	329
PkrI	GCNGC	4 cut(s)	101, 286, 361, 364
PspPI	GGNCC	2 cut(s)	172, 499
PstI	CTGCAG	1 cut(s)	364
PsuI	RGATCY	1 cut(s)	349
SaqAI	TTAA	5 cut(s)	377, 434, 525, 642, 691
SatI	GCNGC	4 cut(s)	100, 285, 360, 363
Sau3AI	GATC	3 cut(s)	349, 485, 625
Sau96I	GGNCC	2 cut(s)	172, 499
SetI	ASST	9 cut(s)	101, 118, 232, 296, 307, 361, 427, 565, 583
SfaNI	GCATC	1 cut(s)	209
SfcI	CTRYAG	1 cut(s)	360
SfuI	TTCGAA	1 cut(s)	269
SmlI	CTYRAG	1 cut(s)	94
SmoI	CTYRAG	1 cut(s)	94
Sse9I	AATT	3 cut(s)	57, 374, 408
SsiI	CCGC	1 cut(s)	35
SspMI	CTAG	3 cut(s)	113, 165, 560
TaaI	ACNGT	2 cut(s)	129, 480
TaqI	TCGA	1 cut(s)	269
TasI	AATT	3 cut(s)	57, 374, 408
TfiI	GAWTC	2 cut(s)	266, 308
Tru1I	TTAA	5 cut(s)	377, 434, 525, 642, 691
Tru9I	TTAA	5 cut(s)	377, 434, 525, 642, 691
TscAI	CASTG	3 cut(s)	485, 538, 577
TseFI	GTSAC	1 cut(s)	132
TseI	GCWGC	4 cut(s)	99, 284, 359, 362
Tsp45I	GTSAC	1 cut(s)	132
TspDTI	ATGAA	2 cut(s)	183, 558
TspRI	CASTG	3 cut(s)	485, 538, 577
Van91I	CCANNNNNTGG	1 cut(s)	329
XagI	CCTNNNNNAGG	1 cut(s)	225
XapI	RAATTY	1 cut(s)	408
XspI	CTAG	3 cut(s)	113, 165, 560

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.