Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0008057

Physical Location & Seq

Genomic Coordinates Reverse (-)

24874927 .. 24878167

Gene Structure 3241 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1185500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGGATATATGCTGCCGATTCGGATTGCTTAATTCTGCACTCCATCTTCCCCCTCTATCGATTCTCAGCAGGCCTCCTTATCTATTTCCATCCTTCCCAACTTGCCCTCCTAAACTCGCTAAATTTTCGCATCTGCCACTCCTCCGCCGGAACCCCATTATTTATACCAGAACCACACTCCTGTGTACCTCTTCCCAATCTTCTTCTTCAACGGCAATGGAAGCGCCTCCCCAAGGTTATAGAAGGAACGTCGGCATCTGCCTCATCAATGATTCGAAAAAGATTTTTGCTGCTTCGAGGTTGGATATTCCCAGTGCGTGGCAAATGCCGCAGGGCGGTATTGATGAGGCTGAAGATCCAAGAAGTGCAGCCGTCAGGGAATTGAGAGAGGAGACAGGAGTTAAATCAGCAGAAATTCTTGCACAGGCACCTTATTGGTTAACTTATGATTTCCCACCAGAAGTTAGGGAAAAACTCCGGCATCAGTGGGGATCAGATTGGAAGGGCCAAGCACAGAAATGGTTTCTTCTTAAGTTCACCGGGAAGGATGACGAAATCAATCTTTTAGGTGATGGAAGTGAAAAACCTGAGTTTGGGGAGTGGTCATGGATGTCACCTGAACAAGTAGTTGATCACGCTGTGGACTTTAAGAAGCCTGTTTACAAGGAAGTTCTTGCATCTTTTGCACCCTATCTTCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004551 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008893 GO:0009507 GO:0009536 GO:0009987 GO:0016462 GO:0016787 GO:0016788 GO:0016794 GO:0016817 GO:0016818 GO:0019637 GO:0034432 GO:0034641 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0055086 GO:0071704 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUDIX

Protein Analysis

234

Amino Acids

26.4

Weight (kDa)

6.9

Isoelectric Point (pI)

56.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NUDIX	PF00293	80 - 222	2.7e-23	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008057)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10620
fragaria_vesca	FvH4_1g22720 FvH4_1g22720 FvH4_1g22720 FvH4_1g25050 FvH4_1g25050
malus_domestica	MD03G1166000.v1.1 MD11G1185500.v1.1
prunus_persica	Prupe.4G266400_v2.0.a1
pyrus_communis	pycom12g08760
rosa_chinensis	RchiOBHm_Chr2g0117011
rosa_laevigata	RLG00000018319
rosa_multiflora	Rmu_sc0011969.1_g000001 Rmu_ssc0000238.1_g000007
rosa_roxburghii	Rroxscaffold_2G00126820
rosa_rugosa	Rorug02G0209500 Rorug02G0209500 Rorug02G0209500
rosa_samantha	Rh2AG265400 Rh2BG277200 Rh2DG272700 Rh2DG291700
rosa_wichuraiana	Rw0G019100 Rw2G020940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	427
AccB7I	CCANNNNNTGG	1 cut(s)	318
AciI	CCGC	3 cut(s)	145, 329, 336
AclWI	GGATC	2 cut(s)	350, 499
AcsI	RAATTY	2 cut(s)	122, 414
AcuI	CTGAAG	1 cut(s)	372
AdeI	CACNNNGTG	1 cut(s)	640
AfaI	GTAC	1 cut(s)	187
AfiI	CCNNNNNNNGG	4 cut(s)	233, 318, 335, 593
AflII	CTTAAG	1 cut(s)	530
AgsI	TTSAA	2 cut(s)	210, 698
AleI	CACNNNNGTG	1 cut(s)	181
Alw26I	GTCTC	1 cut(s)	386
AlwI	GGATC	2 cut(s)	350, 499
AoxI	GGCC	2 cut(s)	71, 505
ApeKI	GCWGC	3 cut(s)	12, 290, 368
ApoI	RAATTY	2 cut(s)	122, 414
AspLEI	GCGC	1 cut(s)	226
AspS9I	GGNCC	1 cut(s)	505
AsuC2I	CCSGG	1 cut(s)	541
AsuHPI	GGTGA	3 cut(s)	529, 581, 606
AsuII	TTCGAA	1 cut(s)	275
BanI	GGYRCC	1 cut(s)	427
BarI	GAAGNNNNNNTAC	2 cut(s)	644, 676
BbvI	GCAGC	2 cut(s)	277, 380
BccI	CCATC	3 cut(s)	51, 97, 566
BceAI	ACGGC	2 cut(s)	228, 356
BclI	TGATCA	1 cut(s)	631
BcnI	CCSGG	1 cut(s)	541
BcoDI	GTCTC	1 cut(s)	386
BfoI	RGCGCY	1 cut(s)	227
BfrI	CTTAAG	1 cut(s)	530
BisI	GCNGC	4 cut(s)	13, 291, 329, 369
BlsI	GCNGC	4 cut(s)	14, 292, 330, 370
Bme1390I	CCNGG	1 cut(s)	541
BmgT120I	GGNCC	1 cut(s)	505
BmiI	GGNNCC	2 cut(s)	152, 429
BmrFI	CCNGG	1 cut(s)	541
BmrI	ACTGGG	1 cut(s)	306
BmsI	GCATC	4 cut(s)	139, 264, 490, 686
BmuI	ACTGGG	1 cut(s)	306
Bpu14I	TTCGAA	1 cut(s)	275
BpuMI	CCSGG	1 cut(s)	541
Bsa29I	ATCGAT	1 cut(s)	59
BsaJI	CCNNGG	1 cut(s)	232
BsaXI	ACNNNNNCTCC	2 cut(s)	91, 121
Bsc4I	CCNNNNNNNGG	4 cut(s)	233, 318, 335, 593
Bse1I	ACTGG	1 cut(s)	312
Bse3DI	GCAATG	1 cut(s)	222
BseCI	ATCGAT	1 cut(s)	59
BseDI	CCNNGG	1 cut(s)	232
BseGI	GGATG	3 cut(s)	89, 553, 615
BseLI	CCNNNNNNNGG	4 cut(s)	233, 318, 335, 593
BseMI	GCAATG	1 cut(s)	222
BseMII	CTCAG	2 cut(s)	79, 579
BseNI	ACTGG	1 cut(s)	312
BseRI	GAGGAG	2 cut(s)	131, 404
BseXI	GCAGC	2 cut(s)	277, 380
BsgI	GTGCAG	2 cut(s)	21, 387
BshFI	GGCC	2 cut(s)	73, 507
BshNI	GGYRCC	1 cut(s)	427
BshVI	ATCGAT	1 cut(s)	59
BsiSI	CCGG	3 cut(s)	148, 478, 540
BslI	CCNNNNNNNGG	4 cut(s)	233, 318, 335, 593
BsmAI	GTCTC	1 cut(s)	386
BsnI	GGCC	2 cut(s)	73, 507
Bsp119I	TTCGAA	1 cut(s)	275
Bsp143I	GATC	3 cut(s)	355, 491, 631
BspACI	CCGC	3 cut(s)	145, 329, 336
BspANI	GGCC	2 cut(s)	73, 507
BspCNI	CTCAG	2 cut(s)	78, 580
BspDI	ATCGAT	1 cut(s)	59
BspLI	GGNNCC	2 cut(s)	152, 429
BspPI	GGATC	2 cut(s)	350, 499
BspT104I	TTCGAA	1 cut(s)	275
BspT107I	GGYRCC	1 cut(s)	427
BspTI	CTTAAG	1 cut(s)	530
BsrDI	GCAATG	1 cut(s)	222
BsrI	ACTGG	1 cut(s)	312
BssECI	CCNNGG	1 cut(s)	232
BssMI	GATC	3 cut(s)	355, 491, 631
BssT1I	CCWWGG	1 cut(s)	232
Bst6I	CTCTTC	1 cut(s)	196
BstAFI	CTTAAG	1 cut(s)	530
BstAPI	GCANNNNNTGC	1 cut(s)	683
BstBI	TTCGAA	1 cut(s)	275
BstC8I	GCNNGC	1 cut(s)	71
BstDEI	CTNAG	2 cut(s)	65, 588
BstENI	CCTNNNNNAGG	1 cut(s)	231
BstF5I	GGATG	3 cut(s)	89, 553, 615
BstH2I	RGCGCY	1 cut(s)	227
BstHHI	GCGC	1 cut(s)	226
BstKTI	GATC	3 cut(s)	358, 494, 634
BstMAI	GTCTC	1 cut(s)	386
BstMBI	GATC	3 cut(s)	355, 491, 631
BstMWI	GCNNNNNNNGC	3 cut(s)	221, 328, 683
BstSCI	CCNGG	1 cut(s)	539
BstV1I	GCAGC	2 cut(s)	277, 380
BstX2I	RGATCY	1 cut(s)	355
BstYI	RGATCY	1 cut(s)	355
Bsu15I	ATCGAT	1 cut(s)	59
BsuRI	GGCC	2 cut(s)	73, 507
BsuTUI	ATCGAT	1 cut(s)	59
BtsCI	GGATG	3 cut(s)	89, 553, 615
BtsIMutI	CAGTG	2 cut(s)	319, 491
Cac8I	GCNNGC	1 cut(s)	71
CfoI	GCGC	1 cut(s)	226
Cfr13I	GGNCC	1 cut(s)	505
ClaI	ATCGAT	1 cut(s)	59
Csp6I	GTAC	1 cut(s)	186
CviAII	CATG	1 cut(s)	606
CviJI	RGCY	5 cut(s)	73, 350, 371, 507, 655
CviKI_1	RGCY	5 cut(s)	73, 350, 371, 507, 655
CviQI	GTAC	1 cut(s)	186
DdeI	CTNAG	2 cut(s)	65, 588
DpnI	GATC	3 cut(s)	357, 493, 633
DpnII	GATC	3 cut(s)	355, 491, 631
DraIII	CACNNNGTG	1 cut(s)	640
Eam1104I	CTCTTC	1 cut(s)	196
EarI	CTCTTC	1 cut(s)	196
EciI	GGCGGA	1 cut(s)	134
Eco130I	CCWWGG	1 cut(s)	232
Eco147I	AGGCCT	1 cut(s)	73
Eco57I	CTGAAG	1 cut(s)	372
EcoNI	CCTNNNNNAGG	1 cut(s)	231
EcoT14I	CCWWGG	1 cut(s)	232
ErhI	CCWWGG	1 cut(s)	232
FaeI	CATG	1 cut(s)	609
FaiI	YATR	6 cut(s)	8, 10, 165, 240, 447, 607
FatI	CATG	1 cut(s)	605
FbaI	TGATCA	1 cut(s)	631
Fnu4HI	GCNGC	4 cut(s)	13, 291, 329, 369
FokI	GGATG	3 cut(s)	76, 560, 622
Fsp4HI	GCNGC	4 cut(s)	13, 291, 329, 369
GlaI	GCGC	1 cut(s)	225
GluI	GCNGC	4 cut(s)	13, 291, 329, 369
HaeII	RGCGCY	1 cut(s)	227
HaeIII	GGCC	2 cut(s)	73, 507
HapII	CCGG	3 cut(s)	148, 478, 540
HhaI	GCGC	1 cut(s)	226
Hin1II	CATG	1 cut(s)	609
Hin6I	GCGC	1 cut(s)	224
HinP1I	GCGC	1 cut(s)	224
HincII	GTYRAC	1 cut(s)	441
HindII	GTYRAC	1 cut(s)	441
HinfI	GANTC	3 cut(s)	18, 61, 272
HpaI	GTTAAC	1 cut(s)	441
HpaII	CCGG	3 cut(s)	148, 478, 540
HphI	GGTGA	3 cut(s)	529, 581, 606
Hpy166II	GTNNAC	5 cut(s)	186, 441, 537, 643, 661
Hpy188I	TCNGA	2 cut(s)	23, 496
Hpy8I	GTNNAC	5 cut(s)	186, 441, 537, 643, 661
Hpy99I	CGWCG	1 cut(s)	254
HpyAV	CCTTC	4 cut(s)	103, 237, 496, 538
HpyCH4IV	ACGT	1 cut(s)	249
HpyCH4V	TGCA	5 cut(s)	38, 368, 422, 677, 686
HpyF10VI	GCNNNNNNNGC	3 cut(s)	221, 328, 683
HpyF3I	CTNAG	2 cut(s)	65, 588
HpySE526I	ACGT	1 cut(s)	249
Hsp92II	CATG	1 cut(s)	609
HspAI	GCGC	1 cut(s)	224
Ksp22I	TGATCA	1 cut(s)	631
KspAI	GTTAAC	1 cut(s)	441
Kzo9I	GATC	3 cut(s)	355, 491, 631
Lsp1109I	GCAGC	2 cut(s)	277, 380
LweI	GCATC	4 cut(s)	139, 264, 490, 686
MaeII	ACGT	1 cut(s)	249
MaeIII	GTNAC	1 cut(s)	612
MalI	GATC	3 cut(s)	357, 493, 633
MboI	GATC	3 cut(s)	355, 491, 631
MboII	GAAGA	8 cut(s)	38, 183, 192, 195, 198, 365, 518, 686
MflI	RGATCY	1 cut(s)	355
MluCI	AATT	4 cut(s)	31, 122, 380, 414
MmeI	TCCRAC	1 cut(s)	282
MseI	TTAA	5 cut(s)	30, 402, 440, 531, 648
MslI	CAYNNNNRTG	2 cut(s)	181, 517
MspCI	CTTAAG	1 cut(s)	530
MspI	CCGG	3 cut(s)	148, 478, 540
MspR9I	CCNGG	1 cut(s)	541
MwoI	GCNNNNNNNGC	3 cut(s)	221, 328, 683
NciI	CCSGG	1 cut(s)	541
NdeII	GATC	3 cut(s)	355, 491, 631
NlaIII	CATG	1 cut(s)	609
NlaIV	GGNNCC	2 cut(s)	152, 429
NmuCI	GTSAC	1 cut(s)	612
NspV	TTCGAA	1 cut(s)	275
OliI	CACNNNNGTG	1 cut(s)	181
PceI	AGGCCT	1 cut(s)	73
PfeI	GAWTC	3 cut(s)	18, 61, 272
PflMI	CCANNNNNTGG	1 cut(s)	318
PkrI	GCNGC	4 cut(s)	14, 292, 330, 370
PspN4I	GGNNCC	2 cut(s)	152, 429
PspPI	GGNCC	1 cut(s)	505
PsuI	RGATCY	1 cut(s)	355
RsaI	GTAC	1 cut(s)	187
RsaNI	GTAC	1 cut(s)	186
RseI	CAYNNNNRTG	2 cut(s)	181, 517
SaqAI	TTAA	5 cut(s)	30, 402, 440, 531, 648
SatI	GCNGC	4 cut(s)	13, 291, 329, 369
Sau3AI	GATC	3 cut(s)	355, 491, 631
Sau96I	GGNCC	1 cut(s)	505
ScrFI	CCNGG	1 cut(s)	541
SetI	ASST	8 cut(s)	191, 238, 252, 302, 433, 571, 589, 619
SfaNI	GCATC	4 cut(s)	139, 264, 490, 686
SfuI	TTCGAA	1 cut(s)	275
SmiMI	CAYNNNNRTG	2 cut(s)	181, 517
SmlI	CTYRAG	1 cut(s)	530
SmoI	CTYRAG	1 cut(s)	530
Sse9I	AATT	4 cut(s)	31, 122, 380, 414
SseBI	AGGCCT	1 cut(s)	73
SsiI	CCGC	3 cut(s)	145, 329, 336
StuI	AGGCCT	1 cut(s)	73
StyD4I	CCNGG	1 cut(s)	539
StyI	CCWWGG	1 cut(s)	232
TaiI	ACGT	1 cut(s)	252
TaqI	TCGA	3 cut(s)	59, 275, 296
TasI	AATT	4 cut(s)	31, 122, 380, 414
TauI	GCSGC	1 cut(s)	331
TfiI	GAWTC	3 cut(s)	18, 61, 272
Tru1I	TTAA	5 cut(s)	30, 402, 440, 531, 648
Tru9I	TTAA	5 cut(s)	30, 402, 440, 531, 648
TscAI	CASTG	2 cut(s)	319, 491
TseFI	GTSAC	1 cut(s)	612
TseI	GCWGC	3 cut(s)	12, 290, 368
Tsp45I	GTSAC	1 cut(s)	612
TspRI	CASTG	2 cut(s)	319, 491
Van91I	CCANNNNNTGG	1 cut(s)	318
Vha464I	CTTAAG	1 cut(s)	530
XagI	CCTNNNNNAGG	1 cut(s)	231
XapI	RAATTY	2 cut(s)	122, 414

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.