Rorug02G0209500

Belongs to the disease resistance NB-LRR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000159
Physical Location & Seq
Forward (+)
19679615 .. 19683380
3766 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0209500.1

Sequence Viewer

Length: 813 bp
ATGGCAGATGATCAGAATGATGTGAAGGAGGAGGTGGCGCTGGCAGACATTGCCCCTTTTGATCCTAGTAAAAAGAAGAAGAAGAAGAAGGTTGTAATTGAGGATCCAGCTGATGATTCTGTGGACAAGTTGGCTGAGAAAACGGAAAGCCTGGCAGTTTCTGATGGGCAGGACAGTGCATTTTCTGGTTTGAAAAAGAAGAAGAAGAAGCCAATTGAAACCAGTATTTTGAATGAGGAGCCTGGCGATGTACCGGAGGATTTGGATGAGCACCCGGGTGAGGATGAAGAAGGAGAAGGAATTTTACTGGAGGCCTCCAATCCTTGGGAGGGTAGTGATCGTGATTATGAATATGAGGAGCTTCTTGGAAGGGTGTATAACATTCTTAGGGAGAATAATCCGGAGCTAGCTGGAGACAGGCGTAGGACAGTTATGAGGCCTCCACAAGTTCTACGTGAGGGCACAAAGAAAACTGTCTTTGTGAATTTCATGGATCTGTGCAAGACGATGCATAGGCAACCAGAGCATGTACAGAATTTCTTGTTGGCCGAACTGGGGACAAGTGGATCACTTGATGGACAACAGAGGTTAGTTGTCAAGGGAAGGTTCGCCCCCAAGAATTTTGAAGGGATTCTGCGGCGATATGTCAATGAATATGTGATTTGCCTTGGTTGCAAAAGCCCTGACACTATACTGTCAAAGGAGAATCGCCTGTATTTTCTCAGATGCGAGAAGTGTGGTTCTGGACGATCAGTTGCTCAGATCAAACAAGGTTTTGTTGCTCGTGTTGGGCGTAGGAATGCCGGGGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

270

Amino Acids

30.33

Weight (kDa)

5.53

Isoelectric Point (pI)

47.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
eIF-5_eIF-2B PF01873 139 - 248 1.3e-39 Domain found in IF2B/IF5
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000159)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22800 FvH4_1g23030 FvH4_2g17621 FvH4_2g17623 FvH4_2g17640 FvH4_3g16170 FvH4_4g15173 FvH4_4g15190 FvH4_5g16900 FvH4_6g51550 FvH4_6g51570 FvH4_6g51610 FvH4_6g51610 FvH4_7g31270 FvH4_7g31321 FvH4_7g31321
malus_domestica MD06G1096400.v1.1 MD14G1231900.v1.1
prunus_persica Prupe.5G111200_v2.0.a1 Prupe.5G227800_v2.0.a1
pyrus_communis pycom06g09270
rosa_chinensis RchiOBHm_Chr2g0116281 RchiOBHm_Chr2g0116321 RchiOBHm_Chr2g0116651 RchiOBHm_Chr2g0116681 RchiOBHm_Chr2g0116691 RchiOBHm_Chr2g0116761 RchiOBHm_Chr2g0116981 RchiOBHm_Chr2g0117271 RchiOBHm_Chr2g0117561 RchiOBHm_Chr2g0117671 RchiOBHm_Chr5g0009011 RchiOBHm_Chr5g0009021 RchiOBHm_Chr5g0009031 RchiOBHm_Chr5g0051501 RchiOBHm_Chr5g0059261 RchiOBHm_Chr7g0179121 RchiOBHm_Chr7g0179151 RchiOBHm_Chr7g0180011 RchiOBHm_Chr7g0180031
rosa_laevigata RLG00000018253 RLG00000018256 RLG00000018298 RLG00000018318 RLG00000018339 RLG00000018341 RLG00000018355 RLG00000018360 RLG00000018363 RLG00000018364 RLG00000021097
rosa_multiflora Rmu_co8108666.1_g000001 Rmu_co8113786.1_g000001 Rmu_co8303371.1_g000001 Rmu_co8353409.1_g000001 Rmu_sc0000888.1_g000020 Rmu_sc0001035.1_g000046 Rmu_sc0001617.1_g000028 Rmu_sc0001617.1_g000031 Rmu_sc0002009.1_g000005 Rmu_sc0002009.1_g000024 Rmu_sc0002034.1_g000013 Rmu_sc0002191.1_g000001 Rmu_sc0002983.1_g000027 Rmu_sc0003499.1_g000025 Rmu_sc0004602.1_g000012 Rmu_sc0004795.1_g000010 Rmu_sc0004795.1_g000017 Rmu_sc0004888.1_g000050 Rmu_sc0004888.1_g000052 Rmu_sc0004888.1_g000054 Rmu_sc0004942.1_g000014 Rmu_sc0004942.1_g000015 Rmu_sc0004942.1_g000017 Rmu_sc0004942.1_g000020 Rmu_sc0005792.1_g000003 Rmu_sc0006184.1_g000014 Rmu_sc0006730.1_g000011 Rmu_sc0006730.1_g000012 Rmu_sc0011574.1_g000001 Rmu_sc0011574.1_g000002 Rmu_sc0011969.1_g000003 Rmu_sc0016190.1_g000001 Rmu_sc0016190.1_g000002 Rmu_sc0020362.1_g000003 Rmu_sc0020362.1_g000004 Rmu_sc0020362.1_g000005 Rmu_sc0025557.1_g000002 Rmu_sc0031855.1_g000001 Rmu_ssc0000119.1_g000002 Rmu_ssc0000119.1_g000006 Rmu_ssc0000119.1_g000008 Rmu_ssc0000119.1_g000015 Rmu_ssc0000119.1_g000018 Rmu_ssc0000119.1_g000023 Rmu_ssc0000238.1_g000010 Rmu_ssc0000238.1_g000014
rosa_roxburghii Rroxscaffold_1G00067000 Rroxscaffold_1G00067640 Rroxscaffold_2G00126270 Rroxscaffold_2G00126830 Rroxscaffold_2G00126970 Rroxscaffold_2G00127350 Rroxscaffold_3G00273210 Rroxscaffold_3G00273240 Rroxscaffold_3G00274260 Rroxscaffold_3G00274370 Rroxscaffold_4G00321190
rosa_rugosa Rorug02G0205600 Rorug02G0209300 Rorug02G0209500 Rorug02G0211700 Rorug02G0212300 Rorug02G0213200 Rorug02G0213200 Rorug02G0213400 Rorug03G0352400 Rorug03G0352500 Rorug04G0440900 Rorug05G0171300 Rorug05G0322100 Rorug06G0421200 Rorug06G0421400 Rorug06G0421500 Rorug06G0421600 Rorug06G0429800 Rorug06G0430000 Rorug06G0430100
rosa_samantha Rh1DG100600 Rh2AG260900 Rh2AG261000 Rh2AG263400 Rh2AG263600 Rh2AG263900 Rh2AG265300 Rh2AG269300 Rh2AG269700 Rh2BG281000 Rh2CG267300 Rh2CG267500 Rh2CG270600 Rh2CG270700 Rh2CG271100 Rh2DG274100 Rh2DG290500 Rh2DG291600 Rh4DG089700 Rh5CG077900 Rh5CG421700 Rh5DG065900 Rh5DG066000 Rh7BG020200 Rh7BG020700 Rh7BG029700 Rh7BG029800 Rh7BG029900 Rh7BG030100 Rh7CG031400 Rh7CG031900 Rh7DG021300 Rh7DG030600 Rh7DG030900
rosa_wichuraiana Rw0G008860 Rw1G007590 Rw2G020460 Rw2G020740 Rw2G020770 Rw2G020820 Rw2G020920 Rw2G021100 Rw2G021120 Rw2G021260 Rw2G021280 Rw2G021290 Rw5G006520 Rw5G028690 Rw5G036360 Rw5G036370 Rw7G001730 Rw7G002430 Rw7G002450 Rw7G002470 Rw7G002510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 324
AccIII TCCGGA 1 cut(s) 400
AciI CCGC 1 cut(s) 637
AclWI GGATC 5 cut(s) 56, 98, 111, 501, 574
AcoI YGGCCR 1 cut(s) 546
AcsI RAATTY 4 cut(s) 300, 484, 535, 619
AfaI GTAC 2 cut(s) 252, 531
AfiI CCNNNNNNNGG 4 cut(s) 280, 324, 329, 555
AgsI TTSAA 4 cut(s) 193, 218, 232, 626
AjnI CCWGG 2 cut(s) 150, 241
AjuI GAANNNNNNNTTGG 2 cut(s) 527, 559
AleI CACNNNNGTG 1 cut(s) 276
AluBI AGCT 4 cut(s) 110, 361, 406, 410
AluI AGCT 4 cut(s) 110, 361, 406, 410
Alw21I GWGCWC 1 cut(s) 273
Alw26I GTCTC 1 cut(s) 408
AlwI GGATC 5 cut(s) 56, 98, 111, 501, 574
AlwNI CAGNNNCTG 1 cut(s) 161
Ama87I CYCGRG 1 cut(s) 274
Aor13HI TCCGGA 1 cut(s) 400
AoxI GGCC 3 cut(s) 312, 437, 546
ApoI RAATTY 4 cut(s) 300, 484, 535, 619
Asp700I GAANNNNTTC 1 cut(s) 630
AspLEI GCGC 1 cut(s) 40
AsuC2I CCSGG 3 cut(s) 275, 276, 805
AsuHPI GGTGA 1 cut(s) 290
AsuNHI GCTAGC 1 cut(s) 406
AvaI CYCGRG 1 cut(s) 274
BaeGI GKGCMC 1 cut(s) 464
BamHI GGATCC 1 cut(s) 103
BarI GAAGNNNNNNTAC 2 cut(s) 288, 320
BauI CACGAG 1 cut(s) 783
Bbv12I GWGCWC 1 cut(s) 273
BccI CCATC 2 cut(s) 158, 569
BciT130I CCWGG 2 cut(s) 152, 243
BclI TGATCA 1 cut(s) 10
BcnI CCSGG 3 cut(s) 275, 276, 805
BcoDI GTCTC 1 cut(s) 408
BfaI CTAG 2 cut(s) 66, 407
BfoI RGCGCY 1 cut(s) 41
BisI GCNGC 1 cut(s) 638
BlsI GCNGC 1 cut(s) 639
Bme1390I CCNGG 5 cut(s) 152, 243, 275, 276, 805
BmeT110I CYCGRG 1 cut(s) 274
BmiI GGNNCC 2 cut(s) 105, 240
BmrFI CCNGG 5 cut(s) 152, 243, 275, 276, 805
BmrI ACTGGG 1 cut(s) 563
BmsI GCATC 2 cut(s) 498, 716
BmtI GCTAGC 1 cut(s) 410
BmuI ACTGGG 1 cut(s) 563
BpmI CTGGAG 2 cut(s) 329, 432
BpuMI CCSGG 3 cut(s) 275, 276, 805
BsaAI YACGTR 1 cut(s) 455
BsaJI CCNNGG 4 cut(s) 274, 323, 667, 804
BsaWI WCCGGW 2 cut(s) 253, 400
Bsc4I CCNNNNNNNGG 4 cut(s) 280, 324, 329, 555
Bse1I ACTGG 3 cut(s) 222, 312, 558
Bse3DI GCAATG 1 cut(s) 48
BseAI TCCGGA 1 cut(s) 400
BseBI CCWGG 2 cut(s) 152, 243
BseDI CCNNGG 4 cut(s) 274, 323, 667, 804
BseGI GGATG 2 cut(s) 271, 289
BseLI CCNNNNNNNGG 4 cut(s) 280, 324, 329, 555
BseMI GCAATG 1 cut(s) 48
BseMII CTCAG 3 cut(s) 126, 736, 773
BseNI ACTGG 3 cut(s) 222, 312, 558
BseRI GAGGAG 3 cut(s) 44, 251, 371
BseSI GKGCMC 1 cut(s) 464
BshFI GGCC 3 cut(s) 314, 439, 548
BsiHKAI GWGCWC 1 cut(s) 273
BsiHKCI CYCGRG 1 cut(s) 274
BsiSI CCGG 4 cut(s) 254, 275, 401, 804
BslFI GGGAC 1 cut(s) 571
BslI CCNNNNNNNGG 4 cut(s) 280, 324, 329, 555
BsmAI GTCTC 1 cut(s) 408
BsmFI GGGAC 1 cut(s) 571
BsmI GAATGC 1 cut(s) 805
BsnI GGCC 3 cut(s) 314, 439, 548
BsoBI CYCGRG 1 cut(s) 274
Bsp1286I GDGCHC 2 cut(s) 273, 464
Bsp13I TCCGGA 1 cut(s) 400
Bsp1407I TGTACA 1 cut(s) 529
Bsp143I GATC 8 cut(s) 10, 61, 103, 337, 493, 566, 749, 762
BspACI CCGC 1 cut(s) 637
BspANI GGCC 3 cut(s) 314, 439, 548
BspCNI CTCAG 3 cut(s) 127, 735, 772
BspEI TCCGGA 1 cut(s) 400
BspLI GGNNCC 2 cut(s) 105, 240
BspOI GCTAGC 1 cut(s) 410
BspPI GGATC 5 cut(s) 56, 98, 111, 501, 574
BsrDI GCAATG 1 cut(s) 48
BsrGI TGTACA 1 cut(s) 529
BsrI ACTGG 3 cut(s) 222, 312, 558
BssECI CCNNGG 4 cut(s) 274, 323, 667, 804
BssMI GATC 8 cut(s) 10, 61, 103, 337, 493, 566, 749, 762
BssSI CACGAG 1 cut(s) 783
BssT1I CCWWGG 2 cut(s) 323, 667
Bst2BI CACGAG 1 cut(s) 783
Bst2UI CCWGG 2 cut(s) 152, 243
Bst4CI ACNGT 4 cut(s) 176, 430, 475, 696
BstAPI GCANNNNNTGC 1 cut(s) 50
BstAUI TGTACA 1 cut(s) 529
BstBAI YACGTR 1 cut(s) 455
BstC8I GCNNGC 2 cut(s) 42, 408
BstDEI CTNAG 4 cut(s) 135, 386, 722, 759
BstF5I GGATG 2 cut(s) 271, 289
BstH2I RGCGCY 1 cut(s) 41
BstHHI GCGC 1 cut(s) 40
BstKTI GATC 8 cut(s) 13, 64, 106, 340, 496, 569, 752, 765
BstMAI GTCTC 1 cut(s) 408
BstMBI GATC 8 cut(s) 10, 61, 103, 337, 493, 566, 749, 762
BstMWI GCNNNNNNNGC 3 cut(s) 50, 523, 672
BstNI CCWGG 2 cut(s) 152, 243
BstNSI RCATGY 1 cut(s) 530
BstSCI CCNGG 5 cut(s) 150, 241, 273, 274, 803
BstSLI GKGCMC 1 cut(s) 464
BstX2I RGATCY 2 cut(s) 103, 493
BstYI RGATCY 2 cut(s) 103, 493
BsuRI GGCC 3 cut(s) 314, 439, 548
BtgZI GCGATG 1 cut(s) 261
BtsCI GGATG 2 cut(s) 271, 289
BtsIMutI CAGTG 1 cut(s) 181
Cac8I GCNNGC 2 cut(s) 42, 408
CaiI CAGNNNCTG 1 cut(s) 161
CfoI GCGC 1 cut(s) 40
Cfr9I CCCGGG 1 cut(s) 274
Csp6I GTAC 2 cut(s) 251, 530
CviAII CATG 3 cut(s) 490, 527, 810
CviQI GTAC 2 cut(s) 251, 530
DdeI CTNAG 4 cut(s) 135, 386, 722, 759
DpnI GATC 8 cut(s) 12, 63, 105, 339, 495, 568, 751, 764
DpnII GATC 8 cut(s) 10, 61, 103, 337, 493, 566, 749, 762
EaeI YGGCCR 1 cut(s) 546
Eco130I CCWWGG 2 cut(s) 323, 667
Eco147I AGGCCT 2 cut(s) 314, 439
Eco88I CYCGRG 1 cut(s) 274
EcoRII CCWGG 2 cut(s) 150, 241
EcoT14I CCWWGG 2 cut(s) 323, 667
EcoT22I ATGCAT 1 cut(s) 513
ErhI CCWWGG 2 cut(s) 323, 667
FaeI CATG 3 cut(s) 493, 530, 813
FaqI GGGAC 1 cut(s) 571
FatI CATG 3 cut(s) 489, 526, 809
FbaI TGATCA 1 cut(s) 10
Fnu4HI GCNGC 1 cut(s) 638
FokI GGATG 2 cut(s) 278, 296
Fsp4HI GCNGC 1 cut(s) 638
FspBI CTAG 2 cut(s) 66, 407
GlaI GCGC 1 cut(s) 39
GluI GCNGC 1 cut(s) 638
GsuI CTGGAG 2 cut(s) 329, 432
HaeII RGCGCY 1 cut(s) 41
HaeIII GGCC 3 cut(s) 314, 439, 548
HapII CCGG 4 cut(s) 254, 275, 401, 804
HhaI GCGC 1 cut(s) 40
Hin1II CATG 3 cut(s) 493, 530, 813
Hin6I GCGC 1 cut(s) 38
HinP1I GCGC 1 cut(s) 38
HinfI GANTC 3 cut(s) 116, 631, 706
HpaII CCGG 4 cut(s) 254, 275, 401, 804
HphI GGTGA 1 cut(s) 290
Hpy166II GTNNAC 1 cut(s) 124
Hpy188I TCNGA 4 cut(s) 15, 163, 725, 762
Hpy188III TCNNGA 3 cut(s) 341, 401, 744
Hpy8I GTNNAC 1 cut(s) 124
HpyAV CCTTC 7 cut(s) 19, 82, 284, 290, 363, 597, 620
HpyCH4III ACNGT 4 cut(s) 176, 430, 475, 696
HpyCH4IV ACGT 1 cut(s) 454
HpyCH4V TGCA 4 cut(s) 179, 501, 511, 675
HpyF10VI GCNNNNNNNGC 3 cut(s) 50, 523, 672
HpyF3I CTNAG 4 cut(s) 135, 386, 722, 759
HpySE526I ACGT 1 cut(s) 454
Hsp92II CATG 3 cut(s) 493, 530, 813
HspAI GCGC 1 cut(s) 38
Kpn2I TCCGGA 1 cut(s) 400
Ksp22I TGATCA 1 cut(s) 10
Kzo9I GATC 8 cut(s) 10, 61, 103, 337, 493, 566, 749, 762
LmnI GCTCC 3 cut(s) 238, 358, 403
LweI GCATC 2 cut(s) 498, 716
MaeI CTAG 2 cut(s) 66, 407
MaeII ACGT 1 cut(s) 454
MalI GATC 8 cut(s) 12, 63, 105, 339, 495, 568, 751, 764
MboI GATC 8 cut(s) 10, 61, 103, 337, 493, 566, 749, 762
MboII GAAGA 8 cut(s) 88, 91, 94, 97, 211, 214, 217, 299
MfeI CAATTG 1 cut(s) 213
MflI RGATCY 2 cut(s) 103, 493
MhlI GDGCHC 2 cut(s) 273, 464
MluCI AATT 6 cut(s) 96, 213, 300, 484, 535, 619
Mph1103I ATGCAT 1 cut(s) 513
MroI TCCGGA 1 cut(s) 400
MroXI GAANNNNTTC 1 cut(s) 630
MslI CAYNNNNRTG 1 cut(s) 276
MspA1I CMGCKG 1 cut(s) 110
MspI CCGG 4 cut(s) 254, 275, 401, 804
MspR9I CCNGG 5 cut(s) 152, 243, 275, 276, 805
MunI CAATTG 1 cut(s) 213
Mva1269I GAATGC 1 cut(s) 805
MvaI CCWGG 2 cut(s) 152, 243
MwoI GCNNNNNNNGC 3 cut(s) 50, 523, 672
NciI CCSGG 3 cut(s) 275, 276, 805
NdeII GATC 8 cut(s) 10, 61, 103, 337, 493, 566, 749, 762
NheI GCTAGC 1 cut(s) 406
NlaIII CATG 3 cut(s) 493, 530, 813
NlaIV GGNNCC 2 cut(s) 105, 240
NsiI ATGCAT 1 cut(s) 513
NspI RCATGY 1 cut(s) 530
OliI CACNNNNGTG 1 cut(s) 276
PceI AGGCCT 2 cut(s) 314, 439
PcsI WCGNNNNNNNCGW 1 cut(s) 790
PctI GAATGC 1 cut(s) 805
PdmI GAANNNNTTC 1 cut(s) 630
PfeI GAWTC 3 cut(s) 116, 631, 706
PflMI CCANNNNNTGG 1 cut(s) 324
PkrI GCNGC 1 cut(s) 639
Ppu21I YACGTR 1 cut(s) 455
Psp6I CCWGG 2 cut(s) 150, 241
PspGI CCWGG 2 cut(s) 150, 241
PspN4I GGNNCC 2 cut(s) 105, 240
PstNI CAGNNNCTG 1 cut(s) 161
PsuI RGATCY 2 cut(s) 103, 493
PvuII CAGCTG 1 cut(s) 110
RsaI GTAC 2 cut(s) 252, 531
RsaNI GTAC 2 cut(s) 251, 530
RseI CAYNNNNRTG 1 cut(s) 276
SatI GCNGC 1 cut(s) 638
Sau3AI GATC 8 cut(s) 10, 61, 103, 337, 493, 566, 749, 762
ScrFI CCNGG 5 cut(s) 152, 243, 275, 276, 805
SduI GDGCHC 2 cut(s) 273, 464
SfaNI GCATC 2 cut(s) 498, 716
SmaI CCCGGG 1 cut(s) 276
SmiMI CAYNNNNRTG 1 cut(s) 276
Sse9I AATT 6 cut(s) 96, 213, 300, 484, 535, 619
SseBI AGGCCT 2 cut(s) 314, 439
SsiI CCGC 1 cut(s) 637
SspMI CTAG 2 cut(s) 66, 407
StuI AGGCCT 2 cut(s) 314, 439
StyD4I CCNGG 5 cut(s) 150, 241, 273, 274, 803
StyI CCWWGG 2 cut(s) 323, 667
TaaI ACNGT 4 cut(s) 176, 430, 475, 696
TaiI ACGT 1 cut(s) 457
TasI AATT 6 cut(s) 96, 213, 300, 484, 535, 619
TatI WGTACW 1 cut(s) 529
TauI GCSGC 1 cut(s) 640
TfiI GAWTC 3 cut(s) 116, 631, 706
TscAI CASTG 1 cut(s) 181
TspDTI ATGAA 4 cut(s) 300, 363, 478, 666
TspGWI ACGGA 1 cut(s) 158
TspMI CCCGGG 1 cut(s) 274
TspRI CASTG 1 cut(s) 181
Van91I CCANNNNNTGG 1 cut(s) 324
XapI RAATTY 4 cut(s) 300, 484, 535, 619
XceI RCATGY 1 cut(s) 530
XmaI CCCGGG 1 cut(s) 274
XmnI GAANNNNTTC 1 cut(s) 630
XspI CTAG 2 cut(s) 66, 407
Zsp2I ATGCAT 1 cut(s) 513
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.